Rroxscaffold_6G00406160

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0015596
Physical Location & Seq
Reverse (-)
28592451 .. 28593951
1501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00406160.1

Sequence Viewer

Length: 354 bp
ATGCCTAGTTTTTCTCCATCAATGCAGTCTGAAAGAAGCAGTGGTAGTTTGGGGGATGACCTTCATGAAAAGAATACCTTGATTGCGGGTGCAATGACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTCTGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATCTTGCCACAGAATTTCTCTGCAATGGAAATTACTCAAGTGAAGAGACTAGTGAAGAGATGGAGGATAATGAACATGATGGAGATGGTCCGGGAAGACAAGAAATGGTGTTAAGAAATGCAATTGCACAAAGTCTAATGAATGCATCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

117

Amino Acids

12.41

Weight (kDa)

4.45

Isoelectric Point (pI)

56.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 167
Acc36I ACCTGC 2 cut(s) 155, 167
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AciI CCGC 1 cut(s) 86
AcsI RAATTY 2 cut(s) 141, 212
AfaI GTAC 1 cut(s) 169
AhlI ACTAGT 1 cut(s) 248
Alw26I GTCTC 1 cut(s) 239
AlwNI CAGNNNCTG 2 cut(s) 104, 182
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 141, 212
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 301
BbvI GCAGC 1 cut(s) 169
BccI CCATC 4 cut(s) 25, 253, 272, 278
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 239
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 2 cut(s) 6, 249
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 2 cut(s) 155, 167
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 142
BpiI GAAGAC 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 291
Bse3DI GCAATG 4 cut(s) 99, 162, 171, 229
BseGI GGATG 2 cut(s) 61, 157
BseMI GCAATG 4 cut(s) 99, 162, 171, 229
BseMII CTCAG 1 cut(s) 208
BseXI GCAGC 1 cut(s) 169
BshNI GGYRCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 239
BsmI GAATGC 1 cut(s) 346
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 207
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 169
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 2 cut(s) 155, 167
BspT107I GGYRCC 1 cut(s) 167
BsrDI GCAATG 4 cut(s) 99, 162, 171, 229
Bst6I CTCTTC 2 cut(s) 237, 249
BstAPI GCANNNNNTGC 2 cut(s) 161, 182
BstDEI CTNAG 2 cut(s) 194, 351
BstF5I GGATG 2 cut(s) 61, 157
BstMAI GTCTC 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 161, 182
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 301
BtsCI GGATG 2 cut(s) 61, 157
BtsI GCAGTG 2 cut(s) 46, 123
BtsIMutI CAGTG 2 cut(s) 46, 123
BveI ACCTGC 2 cut(s) 155, 167
CaiI CAGNNNCTG 2 cut(s) 104, 182
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 65, 275
CviJI RGCY 1 cut(s) 104
CviKI_1 RGCY 1 cut(s) 104
CviQI GTAC 1 cut(s) 168
DdeI CTNAG 2 cut(s) 194, 351
Eam1104I CTCTTC 2 cut(s) 237, 249
EarI CTCTTC 2 cut(s) 237, 249
Eco47I GGWCC 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 346
FaeI CATG 2 cut(s) 68, 278
FaiI YATR 2 cut(s) 66, 276
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 2 cut(s) 64, 274
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 68, 164
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 2 cut(s) 6, 249
GluI GCNGC 1 cut(s) 183
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 68, 278
HpaII CCGG 1 cut(s) 290
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 2 cut(s) 31, 197
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 182
HpyF3I CTNAG 2 cut(s) 194, 351
Hsp92II CATG 2 cut(s) 68, 278
KpnI GGTACC 1 cut(s) 171
LpnPI CCDG 5 cut(s) 84, 131, 150, 162, 303
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 142
MaeI CTAG 2 cut(s) 6, 249
MboII GAAGA 3 cut(s) 254, 266, 306
MfeI CAATTG 1 cut(s) 321
MluCI AATT 4 cut(s) 141, 212, 229, 321
MnlI CCTC 2 cut(s) 203, 256
Mph1103I ATGCAT 1 cut(s) 346
MseI TTAA 1 cut(s) 311
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 161, 182
NciI CCSGG 1 cut(s) 291
NlaIII CATG 2 cut(s) 68, 278
NlaIV GGNNCC 1 cut(s) 169
NsiI ATGCAT 1 cut(s) 346
PagI TCATGA 1 cut(s) 64
PaqCI CACCTGC 1 cut(s) 167
PctI GAATGC 1 cut(s) 346
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 118
PstNI CAGNNNCTG 2 cut(s) 104, 182
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 291
SetI ASST 4 cut(s) 63, 80, 169, 181
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 4 cut(s) 141, 212, 229, 321
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 6, 249
StyD4I CCNGG 1 cut(s) 289
TasI AATT 4 cut(s) 141, 212, 229, 321
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 2 cut(s) 46, 123
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 53, 81, 285, 353
TspRI CASTG 2 cut(s) 46, 123
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 2 cut(s) 141, 212
XspI CTAG 2 cut(s) 6, 249
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.