Rh4CG182400

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015596
Physical Location & Seq
Forward (+)
39409604 .. 39411812
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG182400.1

Sequence Viewer

Length: 432 bp
ATGAGTCGCCCCAAGAATGACCGGGCAATAGACCTGGGTAGTCCATTGCTCAATGACATCGCCGATGCTTTCTTGAAGAGCGCAACCATCGGTGTTACCAAAGCTGCTGCAGAGGATACTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAATATGTGTAAAGAAGGTGCATATTATGGAACTGTTGCTGGAGTTTTTGTGACGACGGAGTATGGTCTGGAGAGTGTTCGTGGAAGAAGAGACTGGAAGAATACCATGATTGCGGGTGCAATGACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTCTGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATCTTGCCACAGGATCTCTCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

143

Amino Acids

15.31

Weight (kDa)

9.38

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 18 - 131 1.2e-13 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 371
Acc36I ACCTGC 2 cut(s) 359, 371
Acc65I GGTACC 1 cut(s) 371
AccB1I GGYRCC 1 cut(s) 371
AciI CCGC 2 cut(s) 290, 424
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 345
AfaI GTAC 2 cut(s) 167, 373
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 3 cut(s) 76, 150, 175
AjnI CCWGG 1 cut(s) 33
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 424
AlwNI CAGNNNCTG 2 cut(s) 308, 386
ApeKI GCWGC 3 cut(s) 104, 107, 386
ApoI RAATTY 1 cut(s) 345
Asp718I GGTACC 1 cut(s) 371
AspLEI GCGC 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 23
BanI GGYRCC 1 cut(s) 371
BbvI GCAGC 3 cut(s) 91, 94, 373
BccI CCATC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 35
BciVI GTATCC 1 cut(s) 109
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 261
BfmI CTRYAG 2 cut(s) 108, 318
BfuAI ACCTGC 2 cut(s) 359, 371
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 3 cut(s) 105, 108, 387
BlsI GCNGC 3 cut(s) 106, 109, 388
Bme1390I CCNGG 2 cut(s) 23, 35
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 2 cut(s) 23, 35
BmsI GCATC 2 cut(s) 55, 346
BpmI CTGGAG 2 cut(s) 237, 266
BpuMI CCSGG 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 4 cut(s) 44, 303, 366, 375
BseBI CCWGG 1 cut(s) 35
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMI GCAATG 4 cut(s) 44, 303, 366, 375
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 3 cut(s) 91, 94, 373
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 261
Bsp143I GATC 1 cut(s) 416
BspACI CCGC 2 cut(s) 290, 424
BspCNI CTCAG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 373
BspMAI CTGCAG 2 cut(s) 112, 322
BspMI ACCTGC 2 cut(s) 359, 371
BspPI GGATC 1 cut(s) 424
BspQI GCTCTTC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 4 cut(s) 44, 303, 366, 375
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 1 cut(s) 416
Bst2UI CCWGG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 71, 259
BstAPI GCANNNNNTGC 2 cut(s) 365, 386
BstDEI CTNAG 1 cut(s) 398
BstF5I GGATG 1 cut(s) 361
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 419
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 416
BstMWI GCNNNNNNNGC 2 cut(s) 365, 386
BstNI CCWGG 1 cut(s) 35
BstSCI CCNGG 2 cut(s) 21, 33
BstSFI CTRYAG 2 cut(s) 108, 318
BstV1I GCAGC 3 cut(s) 91, 94, 373
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuI GTATCC 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 1 cut(s) 361
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 2 cut(s) 359, 371
CaiI CAGNNNCTG 2 cut(s) 308, 386
CfoI GCGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 166, 372
CviAII CATG 1 cut(s) 283
CviJI RGCY 2 cut(s) 104, 308
CviKI_1 RGCY 2 cut(s) 104, 308
CviQI GTAC 2 cut(s) 166, 372
DdeI CTNAG 1 cut(s) 398
DpnI GATC 1 cut(s) 418
DpnII GATC 1 cut(s) 416
Eam1104I CTCTTC 2 cut(s) 71, 259
EarI CTCTTC 2 cut(s) 71, 259
EcoRII CCWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 286
FaiI YATR 6 cut(s) 126, 182, 199, 204, 240, 284
FatI CATG 1 cut(s) 282
FauI CCCGC 1 cut(s) 283
Fnu4HI GCNGC 3 cut(s) 105, 108, 387
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 105, 108, 387
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 105, 108, 387
GsuI CTGGAG 2 cut(s) 237, 266
HapII CCGG 1 cut(s) 22
HhaI GCGC 1 cut(s) 83
Hin1II CATG 1 cut(s) 286
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 22
Hpy166II GTNNAC 2 cut(s) 168, 325
Hpy188I TCNGA 1 cut(s) 401
Hpy188III TCNNGA 3 cut(s) 73, 155, 245
Hpy8I GTNNAC 2 cut(s) 168, 325
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 1 cut(s) 185
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 8 cut(s) 110, 197, 296, 320, 359, 368, 380, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 386
HpyF3I CTNAG 1 cut(s) 398
Hsp92II CATG 1 cut(s) 286
HspAI GCGC 1 cut(s) 81
KpnI GGTACC 1 cut(s) 375
Kzo9I GATC 1 cut(s) 416
LguI GCTCTTC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 141
Lsp1109I GCAGC 3 cut(s) 91, 94, 373
LweI GCATC 2 cut(s) 55, 346
MaeIII GTNAC 2 cut(s) 94, 226
MalI GATC 1 cut(s) 418
MboI GATC 1 cut(s) 416
MboII GAAGA 5 cut(s) 88, 187, 273, 276, 286
MflI RGATCY 1 cut(s) 416
MluCI AATT 1 cut(s) 345
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 106, 407
MspI CCGG 1 cut(s) 22
MspR9I CCNGG 2 cut(s) 23, 35
MvaI CCWGG 1 cut(s) 35
MwoI GCNNNNNNNGC 2 cut(s) 365, 386
NciI CCSGG 1 cut(s) 23
NdeII GATC 1 cut(s) 416
NlaIII CATG 1 cut(s) 286
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 226
PaqCI CACCTGC 1 cut(s) 371
PciSI GCTCTTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 106, 109, 388
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 373
PstI CTGCAG 2 cut(s) 112, 322
PstNI CAGNNNCTG 2 cut(s) 308, 386
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 167, 373
RsaNI GTAC 2 cut(s) 166, 372
SapI GCTCTTC 1 cut(s) 71
SatI GCNGC 3 cut(s) 105, 108, 387
Sau3AI GATC 1 cut(s) 416
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 23, 35
SetI ASST 5 cut(s) 36, 106, 196, 373, 385
SfaNI GCATC 2 cut(s) 55, 346
SfcI CTRYAG 2 cut(s) 108, 318
Sse9I AATT 1 cut(s) 345
SsiI CCGC 2 cut(s) 290, 424
StyD4I CCNGG 2 cut(s) 21, 33
TaaI ACNGT 1 cut(s) 211
TasI AATT 1 cut(s) 345
TatI WGTACW 1 cut(s) 165
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 104, 107, 386
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 1 cut(s) 327
XapI RAATTY 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.