Rh4DG165800

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0015596
Physical Location & Seq
Forward (+)
33039683 .. 33041993
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG165800.1

Sequence Viewer

Length: 315 bp
ATGCCAAATGATACTCTTGCAGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAATATGGGTAAAGAAGGTGCATATTATGGAACTGTTGCTGGAGTTTTTGTGATGACGGAGTATGGTCTGGAGAGTGTTCGTGGAAGAAGAGACTGGAAGAATACCATGATTGCGGGTGCAATGACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTCTGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATCTTGCCACAGGATCCCTCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

104

Amino Acids

11.09

Weight (kDa)

9.35

Isoelectric Point (pI)

27.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 12 - 92 2.9e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 2 cut(s) 242, 254
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AciI CCGC 2 cut(s) 173, 307
AclWI GGATC 2 cut(s) 294, 307
AcsI RAATTY 1 cut(s) 228
AfaI GTAC 2 cut(s) 50, 256
AgsI TTSAA 2 cut(s) 33, 58
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 294, 307
AlwNI CAGNNNCTG 2 cut(s) 191, 269
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 228
Asp718I GGTACC 1 cut(s) 254
BamHI GGATCC 1 cut(s) 299
BanI GGYRCC 1 cut(s) 254
BbvI GCAGC 1 cut(s) 256
BcoDI GTCTC 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 201
BfuAI ACCTGC 2 cut(s) 242, 254
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
BmiI GGNNCC 2 cut(s) 256, 301
BmsI GCATC 1 cut(s) 229
BpmI CTGGAG 2 cut(s) 120, 149
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse1I ACTGG 1 cut(s) 158
Bse3DI GCAATG 3 cut(s) 186, 249, 258
BseGI GGATG 1 cut(s) 244
BseMI GCAATG 3 cut(s) 186, 249, 258
BseMII CTCAG 1 cut(s) 295
BseNI ACTGG 1 cut(s) 158
BseXI GCAGC 1 cut(s) 256
BshNI GGYRCC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 299
BspACI CCGC 2 cut(s) 173, 307
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 256, 301
BspMAI CTGCAG 1 cut(s) 205
BspMI ACCTGC 2 cut(s) 242, 254
BspPI GGATC 2 cut(s) 294, 307
BspT107I GGYRCC 1 cut(s) 254
BsrDI GCAATG 3 cut(s) 186, 249, 258
BsrI ACTGG 1 cut(s) 158
BssMI GATC 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 94
Bst6I CTCTTC 1 cut(s) 142
BstAPI GCANNNNNTGC 2 cut(s) 248, 269
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 2 cut(s) 248, 269
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 256
BstX2I RGATCY 1 cut(s) 299
BstYI RGATCY 1 cut(s) 299
BtsCI GGATG 1 cut(s) 244
BtsI GCAGTG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 2 cut(s) 242, 254
CaiI CAGNNNCTG 2 cut(s) 191, 269
Csp6I GTAC 2 cut(s) 49, 255
CviAII CATG 1 cut(s) 166
CviJI RGCY 1 cut(s) 191
CviKI_1 RGCY 1 cut(s) 191
CviQI GTAC 2 cut(s) 49, 255
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
FaeI CATG 1 cut(s) 169
FaiI YATR 5 cut(s) 65, 82, 87, 123, 167
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 2 cut(s) 120, 149
Hin1II CATG 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 51, 208
Hpy188I TCNGA 1 cut(s) 284
Hpy188III TCNNGA 2 cut(s) 38, 128
Hpy8I GTNNAC 2 cut(s) 51, 208
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4V TGCA 8 cut(s) 20, 80, 179, 203, 242, 251, 263, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 269
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 1 cut(s) 169
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 1 cut(s) 229
MalI GATC 1 cut(s) 301
MboI GATC 1 cut(s) 299
MboII GAAGA 4 cut(s) 70, 156, 159, 169
MflI RGATCY 1 cut(s) 299
MluCI AATT 1 cut(s) 228
MnlI CCTC 2 cut(s) 290, 314
MwoI GCNNNNNNNGC 2 cut(s) 248, 269
NdeII GATC 1 cut(s) 299
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 256, 301
PaqCI CACCTGC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 271
PspN4I GGNNCC 2 cut(s) 256, 301
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 2 cut(s) 191, 269
PsuI RGATCY 1 cut(s) 299
RsaI GTAC 2 cut(s) 50, 256
RsaNI GTAC 2 cut(s) 49, 255
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 1 cut(s) 299
SetI ASST 3 cut(s) 79, 256, 268
SfaNI GCATC 1 cut(s) 229
SfcI CTRYAG 1 cut(s) 201
Sse9I AATT 1 cut(s) 228
SsiI CCGC 2 cut(s) 173, 307
TaaI ACNGT 1 cut(s) 94
TasI AATT 1 cut(s) 228
TatI WGTACW 1 cut(s) 48
TscAI CASTG 1 cut(s) 210
TseI GCWGC 1 cut(s) 269
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 210
XapI RAATTY 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.