Rorug04G0106300

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015596
Physical Location & Seq
Forward (+)
16433215 .. 16433682
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0106300.1

Sequence Viewer

Length: 468 bp
ATGGGTAATTTGGTGCGTATGCAAACTCTTGATTTCCATGATTCGGTTCTTCTTGAGAGTAAAACCATTGCCAATGTGATATCGAAAATGGAAGAACTGAGACATTTGTATATGCCCTACTTGGACCGGTGGGGCAGGAGGATACAACTGTCTACTCTTTGCAAATTGCAAACGTTATGTCATGCTTCAAGCTTGTCTTGGGATTTGAGTGATCTTGTGAAGTTGGCCAGTCTTCGAAAACTAAGCATAGAACTGTTTGGAAAGTTGAAAAATCTGAAAGAAATCTTGAGGCGGTCAAGCAGTACGCTGGATGGTATTCGTTCTCTGAGTGTTTGCAACAATGATGAAATTGAATGTGCTGGAGGTGCTCGGGAGGTTAGAGAAATAGTGTTAAGCTGTCGTTATGTGTACAAGCTGAGGGCATTTGGGCCAATGGAAGAGTTACCGGCAGAGCTCCAGTACTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

155

Amino Acids

17.86

Weight (kDa)

8.61

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 2 - 130 2.3e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 152
AciI CCGC 1 cut(s) 292
AclI AACGTT 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 225
AfaI GTAC 3 cut(s) 304, 410, 461
AfiI CCNNNNNNNGG 1 cut(s) 43
AgeI ACCGGT 1 cut(s) 126
AgsI TTSAA 3 cut(s) 189, 268, 353
AluBI AGCT 4 cut(s) 192, 396, 415, 454
AluI AGCT 4 cut(s) 192, 396, 415, 454
Alw21I GWGCWC 2 cut(s) 370, 456
Alw26I GTCTC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 225, 428
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AsiGI ACCGGT 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 124, 428
AsuII TTCGAA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 124
BaeI ACNNNNGTAYC 2 cut(s) 134, 167
BalI TGGCCA 1 cut(s) 227
BanII GRGCYC 1 cut(s) 456
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 370, 456
BbvCI CCTCAGC 1 cut(s) 416
BccI CCATC 1 cut(s) 305
BciVI GTATCC 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 94
BfuI GTATCC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 124, 428
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 381, 440
Bpu10I CCTNAGC 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 2 cut(s) 74, 307
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 2 cut(s) 126, 445
Bse1I ACTGG 2 cut(s) 228, 457
Bse3DI GCAATG 1 cut(s) 66
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 3 cut(s) 89, 317, 407
BseNI ACTGG 2 cut(s) 228, 457
BshFI GGCC 2 cut(s) 227, 430
BshTI ACCGGT 1 cut(s) 126
BsiHKAI GWGCWC 2 cut(s) 370, 456
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 127, 446
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 227, 430
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 2 cut(s) 370, 456
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 1 cut(s) 292
BspANI GGCC 2 cut(s) 227, 430
BspCNI CTCAG 3 cut(s) 90, 318, 408
BspT104I TTCGAA 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 2 cut(s) 126, 445
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 2 cut(s) 228, 457
BssAI RCCGGY 2 cut(s) 126, 445
BssMI GATC 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 150, 255
Bst6I CTCTTC 1 cut(s) 432
BstAUI TGTACA 1 cut(s) 408
BstBI TTCGAA 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 98, 242, 326, 416
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 224
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 227, 430
BtsCI GGATG 1 cut(s) 316
Cfr10I RCCGGY 2 cut(s) 126, 445
Cfr13I GGNCC 2 cut(s) 124, 428
Csp6I GTAC 3 cut(s) 303, 409, 460
CspAI ACCGGT 1 cut(s) 126
CviAII CATG 2 cut(s) 38, 182
CviJI RGCY 6 cut(s) 192, 227, 396, 415, 430, 454
CviKI_1 RGCY 6 cut(s) 192, 227, 396, 415, 430, 454
CviQI GTAC 3 cut(s) 303, 409, 460
DdeI CTNAG 4 cut(s) 98, 242, 326, 416
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 225
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
Ecl136II GAGCTC 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 456
Eco32I GATATC 1 cut(s) 81
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 454
EcoRV GATATC 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 2 cut(s) 41, 185
FaiI YATR 8 cut(s) 20, 39, 111, 113, 178, 183, 248, 405
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FatI CATG 2 cut(s) 37, 181
FblI GTMKAC 1 cut(s) 152
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 1 cut(s) 456
GsuI CTGGAG 2 cut(s) 381, 440
HaeIII GGCC 2 cut(s) 227, 430
HapII CCGG 2 cut(s) 127, 446
Hin1II CATG 2 cut(s) 41, 185
HindIII AAGCTT 1 cut(s) 190
HinfI GANTC 1 cut(s) 41
HpaII CCGG 2 cut(s) 127, 446
Hpy166II GTNNAC 2 cut(s) 153, 409
Hpy188I TCNGA 2 cut(s) 276, 327
Hpy188III TCNNGA 4 cut(s) 29, 53, 286, 371
Hpy8I GTNNAC 2 cut(s) 153, 409
HpyCH4III ACNGT 2 cut(s) 150, 255
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 22, 162, 169, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 365
HpyF3I CTNAG 4 cut(s) 98, 242, 326, 416
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 2 cut(s) 41, 185
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 1 cut(s) 459
LpnPI CCDG 6 cut(s) 121, 140, 241, 293, 345, 459
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 441
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 4 cut(s) 41, 104, 224, 449
MhlI GDGCHC 2 cut(s) 370, 456
MlsI TGGCCA 1 cut(s) 227
MluCI AATT 3 cut(s) 7, 164, 348
MluNI TGGCCA 1 cut(s) 227
MnlI CCTC 5 cut(s) 132, 282, 356, 367, 411
Mox20I TGGCCA 1 cut(s) 227
MscI TGGCCA 1 cut(s) 227
MseI TTAA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 227
MspI CCGG 2 cut(s) 127, 446
MwoI GCNNNNNNNGC 1 cut(s) 365
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 41, 185
NspV TTCGAA 1 cut(s) 235
PfeI GAWTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 173
PspPI GGNCC 2 cut(s) 124, 428
RsaI GTAC 3 cut(s) 304, 410, 461
RsaNI GTAC 3 cut(s) 303, 409, 460
SacI GAGCTC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 392
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 124, 428
ScaI AGTACT 1 cut(s) 461
SduI GDGCHC 2 cut(s) 370, 456
SetI ASST 7 cut(s) 176, 194, 367, 378, 398, 417, 456
SfuI TTCGAA 1 cut(s) 235
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 2 cut(s) 53, 286
SmoI CTYRAG 2 cut(s) 53, 286
Sse9I AATT 3 cut(s) 7, 164, 348
SsiI CCGC 1 cut(s) 292
SstI GAGCTC 1 cut(s) 456
TaaI ACNGT 2 cut(s) 150, 255
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 83, 235
TasI AATT 3 cut(s) 7, 164, 348
TatI WGTACW 2 cut(s) 408, 459
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TspDTI ATGAA 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 152
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.