Rh4BG170300

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015596
Physical Location & Seq
Forward (+)
30504167 .. 30516282
12116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG170300.1

Sequence Viewer

Length: 231 bp
ATGGGAACTGTAGCTGGAGTTTTTGTGACGACGGAGTATGGTCTAGAGAGTGTTCGTGGCAGAAGAGACTGGAAGAATACCATGATTGCGGGTGCAATGACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTCTGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATCTTGCCACAGGATCTCTCCGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

76

Amino Acids

7.99

Weight (kDa)

10.27

Isoelectric Point (pI)

26.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 2 - 64 5.1e-11 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 170
Acc36I ACCTGC 2 cut(s) 158, 170
Acc65I GGTACC 1 cut(s) 170
AccB1I GGYRCC 1 cut(s) 170
AciI CCGC 2 cut(s) 89, 223
AclWI GGATC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 144
AfaI GTAC 1 cut(s) 172
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 223
AlwNI CAGNNNCTG 2 cut(s) 107, 185
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 170
BanI GGYRCC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 60
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 2 cut(s) 9, 117
BfuAI ACCTGC 2 cut(s) 158, 170
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 145
BpmI CTGGAG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 3 cut(s) 102, 165, 174
BseGI GGATG 1 cut(s) 160
BseMI GCAATG 3 cut(s) 102, 165, 174
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 2 cut(s) 89, 223
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 121
BspMI ACCTGC 2 cut(s) 158, 170
BspPI GGATC 1 cut(s) 223
BspT107I GGYRCC 1 cut(s) 170
BsrDI GCAATG 3 cut(s) 102, 165, 174
BsrI ACTGG 1 cut(s) 74
BssMI GATC 1 cut(s) 215
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 58
BstAPI GCANNNNNTGC 2 cut(s) 164, 185
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 164, 185
BstSFI CTRYAG 2 cut(s) 9, 117
BstV1I GCAGC 1 cut(s) 172
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
BveI ACCTGC 2 cut(s) 158, 170
CaiI CAGNNNCTG 2 cut(s) 107, 185
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 82
CviJI RGCY 2 cut(s) 14, 107
CviKI_1 RGCY 2 cut(s) 14, 107
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
FaeI CATG 1 cut(s) 85
FaiI YATR 2 cut(s) 39, 83
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 186
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 36
Hin1II CATG 1 cut(s) 85
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 124
Hpy99I CGWCG 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 6 cut(s) 95, 119, 158, 167, 179, 188
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 185
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 85
KpnI GGTACC 1 cut(s) 174
Kzo9I GATC 1 cut(s) 215
LpnPI CCDG 6 cut(s) 55, 87, 134, 153, 165, 198
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 25
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 75, 85
MflI RGATCY 1 cut(s) 215
MluCI AATT 1 cut(s) 144
MnlI CCTC 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 164, 185
NdeII GATC 1 cut(s) 215
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 25
PaqCI CACCTGC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 121
PstNI CAGNNNCTG 2 cut(s) 107, 185
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 215
SetI ASST 3 cut(s) 16, 172, 184
SfaNI GCATC 1 cut(s) 145
SfcI CTRYAG 2 cut(s) 9, 117
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 89, 223
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 10
TasI AATT 1 cut(s) 144
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 25
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 126
XapI RAATTY 1 cut(s) 144
XbaI TCTAGA 1 cut(s) 43
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.