Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Reverse (-)

21023202 .. 21028498

Gene Structure 5297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGGTTTGGTTGGATTATCGAGAATGAGTGGAGGTATGGGAAGAGAGGGAAAAAGGATCGGTGTGGCTCTGTGGAGTAAACTTACATACCCATTTGGCCGAATTGAAGTAAAGCAGCCTGATGCCCTTAGGGTTGCCACTGGTGGGGGTGACCACAAGAGGAATTTGGATCAGTTGGAAACGTTATCAAAGAAGCTCAAGGCCAAAACTCTGGTTCTTGCTCGTGAGGGTCTGAACGCAGAGCAGCTTACACGGGACCTCAAGTCTTTTGAATTGAAGACAACATTTGAAGATGTTTTTCCTGCTGAAGCAACGAGCATTGAAGACTATCTGCAGCAGTGTCGCATGATATACCAGAAATGTGTGGCCATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016973 GO:0017038 GO:0017056 GO:0022607 GO:0031503 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0046931 GO:0050657 GO:0050658 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051236 GO:0051292 GO:0051641 GO:0051649 GO:0065003 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Nic96

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

9.48

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	182
AclWI	GGATC	2 cut(s)	65, 177
AcoI	YGGCCR	2 cut(s)	97, 366
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	1 cut(s)	327
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	5 cut(s)	107, 272, 277, 290, 323
AhdI	GACNNNNNGTC	1 cut(s)	262
AluBI	AGCT	2 cut(s)	196, 247
AluI	AGCT	2 cut(s)	196, 247
AlwI	GGATC	2 cut(s)	65, 177
AoxI	GGCC	3 cut(s)	97, 201, 366
ApeKI	GCWGC	3 cut(s)	115, 244, 334
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	256
AxyI	CCTNAGG	1 cut(s)	128
BalI	TGGCCA	1 cut(s)	368
BauI	CACGAG	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	284, 330
BbvI	GCAGC	3 cut(s)	127, 256, 346
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BfmI	CTRYAG	1 cut(s)	332
BisI	GCNGC	3 cut(s)	116, 245, 335
BlsI	GCNGC	3 cut(s)	117, 246, 336
Bme18I	GGWCC	1 cut(s)	256
BmeRI	GACNNNNNGTC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	257
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	284, 330
BpuEI	CTTGAG	2 cut(s)	182, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	145
Bse21I	CCTNAGG	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	127, 256, 346
BshFI	GGCC	3 cut(s)	99, 203, 368
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	3 cut(s)	99, 203, 368
Bsp143I	GATC	2 cut(s)	57, 169
BspANI	GGCC	3 cut(s)	99, 203, 368
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	65, 177
BsrI	ACTGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	57, 169
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	128
BstEII	GGTNACC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	60, 172
BstMBI	GATC	2 cut(s)	57, 169
BstPI	GGTNACC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	127, 256, 346
BstV2I	GAAGAC	2 cut(s)	284, 330
BstXI	CCANNNNNNTGG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	3 cut(s)	99, 203, 368
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	138, 344
Cfr13I	GGNCC	1 cut(s)	256
CviAII	CATG	1 cut(s)	346
CviJI	RGCY	7 cut(s)	68, 99, 118, 196, 203, 247, 368
CviKI_1	RGCY	7 cut(s)	68, 99, 118, 196, 203, 247, 368
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	59, 171
DpnII	GATC	2 cut(s)	57, 169
DriI	GACNNNNNGTC	1 cut(s)	262
EaeI	YGGCCR	2 cut(s)	97, 366
Eam1104I	CTCTTC	1 cut(s)	37
Eam1105I	GACNNNNNGTC	1 cut(s)	262
EarI	CTCTTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	128
Eco91I	GGTNACC	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	256
EcoO65I	GGTNACC	1 cut(s)	149
FaeI	CATG	1 cut(s)	349
FaiI	YATR	5 cut(s)	38, 88, 347, 352, 371
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	116, 245, 335
Fsp4HI	GCNGC	3 cut(s)	116, 245, 335
GluI	GCNGC	3 cut(s)	116, 245, 335
HaeIII	GGCC	3 cut(s)	99, 203, 368
Hin1II	CATG	1 cut(s)	349
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	21, 224
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	57, 169
LpnPI	CCDG	5 cut(s)	126, 132, 197, 315, 368
Lsp1109I	GCAGC	3 cut(s)	127, 256, 346
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	149
MalI	GATC	2 cut(s)	59, 171
MboI	GATC	2 cut(s)	57, 169
MboII	GAAGA	4 cut(s)	54, 289, 302, 335
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	3 cut(s)	102, 163, 272
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	26, 40, 153, 220, 269
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	368
NdeII	GATC	2 cut(s)	57, 169
NlaIII	CATG	1 cut(s)	349
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	117, 246, 336
PpuMI	RGGWCCY	1 cut(s)	256
Psp1406I	AACGTT	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	256
PspEI	GGTNACC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	336
SatI	GCNGC	3 cut(s)	116, 245, 335
Sau3AI	GATC	2 cut(s)	57, 169
Sau96I	GGNCC	1 cut(s)	256
SetI	ASST	5 cut(s)	37, 185, 198, 249, 261
SfaNI	GCATC	1 cut(s)	112
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	256
SmlI	CTYRAG	2 cut(s)	197, 260
SmoI	CTYRAG	2 cut(s)	197, 260
Sse9I	AATT	3 cut(s)	102, 163, 272
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	20
TasI	AATT	3 cut(s)	102, 163, 272
TscAI	CASTG	2 cut(s)	145, 344
TseFI	GTSAC	1 cut(s)	149
TseI	GCWGC	3 cut(s)	115, 244, 334
Tsp45I	GTSAC	1 cut(s)	149
TspRI	CASTG	2 cut(s)	145, 344
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.