Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002922.1

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Forward (+)

52401 .. 53958

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002922.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgattgcagaaaagcccagttggattaggcatgagggtttgcaaattttctccattgatgttcagcctggtggacttagggttgccactggtgggggtgaccacaaggtgcgggtatggaacatgaaatccctgggcagggatttctcaaatgaagaatcagccgaaaggctacttgcaaccctccgtgatcactttggttctgtgaattgtgttagatgggcaaagcatggtcgctatcttgcatcaggatctgatgatcaagtaattctaattcatgagaggaagccaggttcaggaaccactgagtttggcagtggagagccccctgatgtcgagaattggaaagttgcaatgactttgagagggcatactgcagatatgtgctgcttttctgtggttaaagtaggtggatctcaattggtctccagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

144

Amino Acids

15.85

Weight (kDa)

7.8

Isoelectric Point (pI)

29.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	259, 421
AcsI	RAATTY	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
AjnI	CCWGG	3 cut(s)	67, 132, 289
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 277, 309
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	2 cut(s)	259, 421
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	387
ApoI	RAATTY	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	213
BciT130I	CCWGG	3 cut(s)	69, 134, 291
BclI	TGATCA	2 cut(s)	190, 259
BcoDI	GTCTC	1 cut(s)	430
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	3 cut(s)	69, 134, 291
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	3 cut(s)	69, 134, 291
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	412
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	2 cut(s)	132, 133
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
Bse1I	ACTGG	2 cut(s)	18, 94
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	3 cut(s)	69, 134, 291
BseDI	CCNNGG	2 cut(s)	132, 133
BseLI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	18, 94
BseXI	GCAGC	1 cut(s)	374
BslI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
BsmAI	GTCTC	1 cut(s)	430
Bso31I	GGTCTC	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	190, 251, 259, 413
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	259, 421
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	18, 94
BssECI	CCNNGG	2 cut(s)	132, 133
BssMI	GATC	4 cut(s)	190, 251, 259, 413
Bst2UI	CCWGG	3 cut(s)	69, 134, 291
BstDEI	CTNAG	2 cut(s)	77, 306
BstEII	GGTNACC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	193, 254, 262, 416
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	4 cut(s)	190, 251, 259, 413
BstNI	CCWGG	3 cut(s)	69, 134, 291
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	67, 132, 289
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	374
BstX2I	RGATCY	2 cut(s)	251, 413
BstYI	RGATCY	2 cut(s)	251, 413
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	87, 303, 322
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	32, 124, 230, 278
CviJI	RGCY	6 cut(s)	16, 67, 164, 172, 289, 325
CviKI_1	RGCY	6 cut(s)	16, 67, 164, 172, 289, 325
DdeI	CTNAG	2 cut(s)	77, 306
DpnI	GATC	4 cut(s)	192, 253, 261, 415
DpnII	GATC	4 cut(s)	190, 251, 259, 413
DraIII	CACNNNGTG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	430
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	67, 132, 289
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	4 cut(s)	35, 127, 233, 281
FaiI	YATR	7 cut(s)	33, 118, 125, 231, 279, 372, 383
FatI	CATG	4 cut(s)	31, 123, 229, 277
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	190, 259
Fnu4HI	GCNGC	1 cut(s)	388
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	388
GluI	GCNGC	1 cut(s)	388
GsuI	CTGGAG	1 cut(s)	412
Hin1II	CATG	4 cut(s)	35, 127, 233, 281
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	5 cut(s)	249, 278, 297, 337, 429
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4V	TGCA	6 cut(s)	8, 43, 179, 245, 353, 377
HpyF3I	CTNAG	2 cut(s)	77, 306
Hsp92II	CATG	4 cut(s)	35, 127, 233, 281
Ksp22I	TGATCA	2 cut(s)	190, 259
Kzo9I	GATC	4 cut(s)	190, 251, 259, 413
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	4 cut(s)	192, 253, 261, 415
MboI	GATC	4 cut(s)	190, 251, 259, 413
MboII	GAAGA	1 cut(s)	167
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	2 cut(s)	251, 413
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	6 cut(s)	45, 208, 267, 273, 340, 419
MnlI	CCTC	4 cut(s)	28, 194, 276, 359
MseI	TTAA	1 cut(s)	402
MspR9I	CCNGG	3 cut(s)	69, 134, 291
MunI	CAATTG	1 cut(s)	419
MvaI	CCWGG	3 cut(s)	69, 134, 291
NdeII	GATC	4 cut(s)	190, 251, 259, 413
NlaIII	CATG	4 cut(s)	35, 127, 233, 281
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	277
PasI	CCCWGGG	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	158
PkrI	GCNGC	1 cut(s)	389
Psp6I	CCWGG	3 cut(s)	67, 132, 289
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	67, 132, 289
PspN4I	GGNNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	251, 413
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	4 cut(s)	190, 251, 259, 413
ScrFI	CCNGG	3 cut(s)	69, 134, 291
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	3 cut(s)	111, 295, 412
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	375
Sse9I	AATT	6 cut(s)	45, 208, 267, 273, 340, 419
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	67, 132, 289
TaqI	TCGA	1 cut(s)	336
TasI	AATT	6 cut(s)	45, 208, 267, 273, 340, 419
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	3 cut(s)	94, 310, 322
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	140, 168, 266
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	94, 310, 322
XapI	RAATTY	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.