Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Forward (+)

6695412 .. 6696972

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGATTGCAGAAAAGCCCAGTTGGATTAGGCATGAGGGTTTGCAAATTTTCTCCATTGATGTTCAGCCTGGTGGGCTTAGGGTTGCCACTGGTGGGGGTGACCACAAGGTGCGGGTATGGAACATGAAATCCCTGGGCTGGGATTTCTCAAGTGAAGAATCAGCCCAAAGGCTACTTGCAACCCTCCGTGATCACTTTGGTTCTGTGAATTGTGTTAGGTGGGCTAAGCATGGTCGATATCTTGCATCAGGATCTGATGATCAAGTAATTCTAATTCATGAGAGGAAGCCAGGTTCAGGAACCACCGAGTTTGGCAGTGGAGAGCCCCCTTATGTCGAGAATTGGAAAGTTGCAAAGACTTTGAGAGGTCATACTGCAGATGTGGTGGATCTCAATTGGTCTCCAGATGGCTCAATGCTGGCCAGTGGAAGTTTAGATAACACTATACACATCTGGAATATGAGCAATGGTATTTGCACTGCTGTTCGTAGGTGTTATTCTAGCTTGGTTAAAGGAGTTACTTGGGATCCGATTGGCTCCTTCATAGCAAGCCAACCAGATGATAAGACTAATTATTTGGCGAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

196

Amino Acids

21.63

Weight (kDa)

7.05

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 190	1.1e-43	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	13 - 91	5.7e-07	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	14 - 99	6.2e-09	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	15 - 188	3.9e-28	WDR5 beta-propeller domain
Beta-prop_EML_2	PF23414	18 - 188	2.7e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd	PF25047	29 - 94	4.4e-06	TEP-1 second beta-propeller
WD40_CDC20-Fz	PF24807	54 - 178	1.8e-17	CDC20/Fizzy WD40 domain
WD40	PF00400	57 - 92	1.7e-07	WD domain, G-beta repeat
Beta-prop_WDR35_TULP_N	PF24797	68 - 183	1.3e-06	WDR35/TULP4 N-terminal
Beta-prop_THOC3	PF25174	112 - 190	4.1e-14	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	112 - 178	1.5e-06	TEP-1 second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	113 - 185	9.5e-09	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	114 - 189	1.8e-09	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	114 - 178	1.4e-07	WDHD1 first WD40 domain
WD40_Prp19	PF24814	114 - 191	2e-11	Prp19 WD40 domain
EIF3I	PF24805	114 - 190	9.9e-06	EIF3I
WD40	PF00400	116 - 153	8.5e-12	WD domain, G-beta repeat
WD40_Gbeta	PF25391	117 - 192	3.6e-08	G protein beta WD-40 repeat protein
ANAPC4_WD40	PF12894	122 - 175	2.5e-06	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_Aladin	PF25460	125 - 182	1.7e-07	Aladin seven-bladed propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	4 cut(s)	259, 396, 521, 534
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
AjnI	CCWGG	3 cut(s)	67, 132, 289
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 277, 309
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	4 cut(s)	259, 396, 521, 534
AlwNI	CAGNNNCTG	1 cut(s)	254
AoxI	GGCC	1 cut(s)	420
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AsuHPI	GGTGA	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	327
BccI	CCATC	1 cut(s)	401
BciT130I	CCWGG	3 cut(s)	69, 134, 291
BclI	TGATCA	2 cut(s)	190, 259
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	73
BlpI	GCTNAGC	1 cut(s)	225
Bme1390I	CCNGG	3 cut(s)	69, 134, 291
BmiI	GGNNCC	3 cut(s)	301, 528, 538
BmrFI	CCNGG	3 cut(s)	69, 134, 291
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	77
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	133
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	132, 133
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
Bse1I	ACTGG	3 cut(s)	18, 94, 423
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	69, 134, 291
BseDI	CCNNGG	2 cut(s)	132, 133
BseLI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
BseMI	GCAATG	1 cut(s)	472
BseNI	ACTGG	3 cut(s)	18, 94, 423
BseYI	CCCAGC	1 cut(s)	138
BshFI	GGCC	1 cut(s)	422
BslI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	5 cut(s)	190, 251, 259, 388, 526
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	422
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	301, 528, 538
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	4 cut(s)	259, 396, 521, 534
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	1 cut(s)	472
BsrI	ACTGG	3 cut(s)	18, 94, 423
BssECI	CCNNGG	2 cut(s)	132, 133
BssMI	GATC	5 cut(s)	190, 251, 259, 388, 526
Bst2UI	CCWGG	3 cut(s)	69, 134, 291
BstC8I	GCNNGC	2 cut(s)	420, 550
BstDEI	CTNAG	2 cut(s)	77, 225
BstEII	GGTNACC	1 cut(s)	98
BstKTI	GATC	5 cut(s)	193, 254, 262, 391, 529
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	5 cut(s)	190, 251, 259, 388, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	3 cut(s)	69, 134, 291
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	67, 132, 289
BstSFI	CTRYAG	1 cut(s)	375
BstX2I	RGATCY	3 cut(s)	251, 388, 526
BstYI	RGATCY	3 cut(s)	251, 388, 526
BsuRI	GGCC	1 cut(s)	422
BtsI	GCAGTG	2 cut(s)	322, 477
BtsIMutI	CAGTG	4 cut(s)	87, 322, 430, 477
Cac8I	GCNNGC	2 cut(s)	420, 550
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	32, 124, 230, 278
DdeI	CTNAG	2 cut(s)	77, 225
DpnI	GATC	5 cut(s)	192, 253, 261, 390, 528
DpnII	GATC	5 cut(s)	190, 251, 259, 388, 526
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	239
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	67, 132, 289
EcoRV	GATATC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	4 cut(s)	35, 127, 233, 281
FatI	CATG	4 cut(s)	31, 123, 229, 277
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	190, 259
FriOI	GRGCYC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	142
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	422
Hin1II	CATG	4 cut(s)	35, 127, 233, 281
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	256, 531
Hpy188III	TCNNGA	6 cut(s)	249, 278, 297, 337, 404, 454
HpyAV	CCTTC	1 cut(s)	550
HpyCH4V	TGCA	7 cut(s)	8, 43, 179, 245, 353, 377, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	2 cut(s)	77, 225
Hsp92II	CATG	4 cut(s)	35, 127, 233, 281
Ksp22I	TGATCA	2 cut(s)	190, 259
Kzo9I	GATC	5 cut(s)	190, 251, 259, 388, 526
LmnI	GCTCC	1 cut(s)	542
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	98, 517
MalI	GATC	5 cut(s)	192, 253, 261, 390, 528
MboI	GATC	5 cut(s)	190, 251, 259, 388, 526
MboII	GAAGA	1 cut(s)	167
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	3 cut(s)	251, 388, 526
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 571
MluNI	TGGCCA	1 cut(s)	422
MnlI	CCTC	4 cut(s)	28, 194, 276, 359
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	422
MspR9I	CCNGG	3 cut(s)	69, 134, 291
MunI	CAATTG	1 cut(s)	394
MvaI	CCWGG	3 cut(s)	69, 134, 291
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	5 cut(s)	190, 251, 259, 388, 526
NlaIII	CATG	4 cut(s)	35, 127, 233, 281
NlaIV	GGNNCC	3 cut(s)	301, 528, 538
NmuCI	GTSAC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	277
PasI	CCCWGGG	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	67, 132, 289
PspEI	GGTNACC	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	3 cut(s)	67, 132, 289
PspN4I	GGNNCC	3 cut(s)	301, 528, 538
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	3 cut(s)	251, 388, 526
SaqAI	TTAA	1 cut(s)	510
Sau3AI	GATC	5 cut(s)	190, 251, 259, 388, 526
ScrFI	CCNGG	3 cut(s)	69, 134, 291
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	6 cut(s)	111, 221, 295, 370, 494, 506
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	1 cut(s)	375
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 571
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	67, 132, 289
TaqI	TCGA	2 cut(s)	235, 336
TasI	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 571
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	510
Tru9I	TTAA	1 cut(s)	510
TscAI	CASTG	4 cut(s)	94, 322, 430, 484
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	140, 266, 532
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	4 cut(s)	94, 322, 430, 484
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.