Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Forward (+)

3608474 .. 3610607

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATTGCAGAGAAGCCCAGTTGGATCAGACATGAGGGAATGCAAATTTTCTCCATTGATGTCCAACCTGGTGGACTTAGGCTTGCAACTGGTGGGGGTGATCACAAGGTGCGGGTATGGAACATGAAATCCCTTGGCAGGGATTTGGATGATGAAGAATCATCAGCCCAGAGGCTACTTGCAACTCTCCGTGATCTCTTTAGTTCTGTGAATTGCGTTAGGTGGGCTAAGCATGGTCGGTTTGTTGCGTCAGGATCAGATGACCAAGTGATTCTAATTCATGAGAGAAAGCCTGGTTCAGGAACCACTGAGTTTGGCAGTGGAGAGCCACCTGACCTTGAAAATTGGAAAGTTGCAATGACTTTGAGAGGGCATACTGCAGATGTGGTGGATCTGAATTGGTCTCCAGATGACTCAATGTTGGCCAGTGGAAGTTTAGATAACACTATACACATCTGGAACATGAGCAATGGTATTTGCACTGCTGTTCTGAGGGGTCACTCTAGCCTGGTTAAAGGAGTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

176

Amino Acids

19.16

Weight (kDa)

5.94

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	32, 262, 399
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	109
AfiI	CCNNNNNNNGG	3 cut(s)	138, 139, 299
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	3 cut(s)	67, 292, 507
AloI	GAACNNNNNNTCC	2 cut(s)	113, 145
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	3 cut(s)	32, 262, 399
AoxI	GGCC	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	110
BalI	TGGCCA	1 cut(s)	425
BciT130I	CCWGG	3 cut(s)	69, 294, 509
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	378
BlpI	GCTNAGC	1 cut(s)	228
Bme1390I	CCNGG	3 cut(s)	69, 294, 509
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	3 cut(s)	69, 294, 509
BmrI	ACTGGG	1 cut(s)	12
BmuI	ACTGGG	1 cut(s)	12
BpmI	CTGGAG	1 cut(s)	390
Bpu1102I	GCTNAGC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	3 cut(s)	138, 139, 299
Bse1I	ACTGG	3 cut(s)	18, 94, 426
Bse3DI	GCAATG	2 cut(s)	363, 475
BseBI	CCWGG	3 cut(s)	69, 294, 509
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	138, 139, 299
BseMI	GCAATG	2 cut(s)	363, 475
BseMII	CTCAG	2 cut(s)	300, 482
BseNI	ACTGG	3 cut(s)	18, 94, 426
BshFI	GGCC	1 cut(s)	425
BslI	CCNNNNNNNGG	3 cut(s)	138, 139, 299
BsmAI	GTCTC	1 cut(s)	408
BsmI	GAATGC	1 cut(s)	45
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	24, 100, 193, 254, 391
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	301, 483
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	304
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	3 cut(s)	32, 262, 399
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	2 cut(s)	363, 475
BsrI	ACTGG	3 cut(s)	18, 94, 426
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	5 cut(s)	24, 100, 193, 254, 391
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	3 cut(s)	69, 294, 509
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	77, 228, 309, 491
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	5 cut(s)	27, 103, 196, 257, 394
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	5 cut(s)	24, 100, 193, 254, 391
BstNI	CCWGG	3 cut(s)	69, 294, 509
BstSCI	CCNGG	3 cut(s)	67, 292, 507
BstSFI	CTRYAG	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	154
BtsI	GCAGTG	2 cut(s)	325, 480
BtsIMutI	CAGTG	4 cut(s)	306, 325, 433, 480
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	280
CseI	GACGC	1 cut(s)	237
CsiI	ACCWGGT	1 cut(s)	67
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviAII	CATG	5 cut(s)	32, 124, 233, 281, 463
CviJI	RGCY	9 cut(s)	16, 82, 167, 175, 227, 292, 328, 425, 507
CviKI_1	RGCY	9 cut(s)	16, 82, 167, 175, 227, 292, 328, 425, 507
DdeI	CTNAG	4 cut(s)	77, 228, 309, 491
DpnI	GATC	5 cut(s)	26, 102, 195, 256, 393
DpnII	GATC	5 cut(s)	24, 100, 193, 254, 391
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	408
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	67, 292, 507
EcoT14I	CCWWGG	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	5 cut(s)	35, 127, 236, 284, 466
FaiI	YATR	8 cut(s)	33, 118, 125, 234, 282, 375, 449, 464
FatI	CATG	5 cut(s)	31, 123, 232, 280, 462
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	100
FokI	GGATG	1 cut(s)	161
FspBI	CTAG	1 cut(s)	504
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	425
HgaI	GACGC	1 cut(s)	237
Hin1II	CATG	5 cut(s)	35, 127, 236, 284, 466
HinfI	GANTC	3 cut(s)	158, 271, 413
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	4 cut(s)	29, 259, 396, 492
Hpy188III	TCNNGA	5 cut(s)	252, 281, 300, 407, 457
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4V	TGCA	7 cut(s)	8, 43, 86, 182, 356, 380, 480
HpyF3I	CTNAG	4 cut(s)	77, 228, 309, 491
Hsp92II	CATG	5 cut(s)	35, 127, 236, 284, 466
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	24, 100, 193, 254, 391
MabI	ACCWGGT	1 cut(s)	67
MaeI	CTAG	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	497, 520
MalI	GATC	5 cut(s)	26, 102, 195, 256, 393
MboI	GATC	5 cut(s)	24, 100, 193, 254, 391
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	391
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	5 cut(s)	45, 211, 276, 343, 397
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	4 cut(s)	28, 165, 362, 486
Mox20I	TGGCCA	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	425
MspR9I	CCNGG	3 cut(s)	69, 294, 509
Mva1269I	GAATGC	1 cut(s)	45
MvaI	CCWGG	3 cut(s)	69, 294, 509
NdeII	GATC	5 cut(s)	24, 100, 193, 254, 391
NlaIII	CATG	5 cut(s)	35, 127, 236, 284, 466
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	497
PagI	TCATGA	1 cut(s)	280
PctI	GAATGC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	158, 271
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp6I	CCWGG	3 cut(s)	67, 292, 507
PspGI	CCWGG	3 cut(s)	67, 292, 507
PspN4I	GGNNCC	1 cut(s)	304
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	513
Sau3AI	GATC	5 cut(s)	24, 100, 193, 254, 391
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	3 cut(s)	69, 294, 509
SetI	ASST	5 cut(s)	70, 111, 224, 334, 339
SexAI	ACCWGGT	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	378
Sse9I	AATT	5 cut(s)	45, 211, 276, 343, 397
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	67, 292, 507
StyI	CCWWGG	1 cut(s)	133
TasI	AATT	5 cut(s)	45, 211, 276, 343, 397
TfiI	GAWTC	2 cut(s)	158, 271
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	4 cut(s)	313, 325, 433, 487
TseFI	GTSAC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	140, 168, 269
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	4 cut(s)	313, 325, 433, 487
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.