Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011228.1

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Reverse (-)

41262 .. 43975

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011228.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgattgcagaaaagcccagttggattaggcatgagggtttgcaaattttctccattgatgttcagcctggtggacttagggttgccactggtgggggtgaccacaaggtgcgggtatggaacatgaaatccctgggcagggatttctcaaatgaagaatcagccgaaaggctacttgcaaccctccgtgatcactttggttctgtgaattgtgttagatgggcaaagcatggtcgctatcttgcatcaggatctgatgatcaagtaattctaattcatgagaggaagccaggttcaggaaccactgagtttggcagtggagagccccctgatgtcgagaattggaaagttgcaatgactttgagagggcatactgcagatatggtggatctcaattggtctccagatgactcgatgctggccagcggaagtttagataacactatacacatctggaatatgagcaatggtatttgtactgctgttcttaggggccattctagcttggttaaaggagttacttgggatccgattggctccttcatagcaagtcaatcagatgataagactgtaattatttggcgaacaagtgactggagtcttgctcacaaaacagacggccactgggcaaaatcacttggatctacctttttcaggcggcttggatggtccccttgtggtcatttcattactaccactcatgggttccagaaaccaaggcattcagcacctgttctagagagaggggaatggtctgccacttttgacttcttaagacataatgcacctgtgattgtggtgaagtttaaccactcaatgtttaagaggaatctttccaatgctcaagaagggaaagttgcacctgttgggtggaccaatcctgcctttccgtacttcttgaatatatgcaacccccaagcactcattacagagaaaaccacagatcagactgcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

318

Amino Acids

35.39

Weight (kDa)

7.82

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	112, 426, 658
AclWI	GGATC	5 cut(s)	259, 396, 521, 534, 649
AcoI	YGGCCR	2 cut(s)	420, 619
AcsI	RAATTY	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	2 cut(s)	478, 893
AfiI	CCNNNNNNNGG	6 cut(s)	93, 138, 139, 296, 654, 702
AflII	CTTAAG	1 cut(s)	772
AgsI	TTSAA	1 cut(s)	901
AjnI	CCWGG	3 cut(s)	67, 132, 289
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 277, 309
AluBI	AGCT	1 cut(s)	504
AluI	AGCT	1 cut(s)	504
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	5 cut(s)	259, 396, 521, 534, 649
AlwNI	CAGNNNCTG	2 cut(s)	254, 731
AoxI	GGCC	3 cut(s)	420, 493, 619
ApoI	RAATTY	1 cut(s)	45
AspS9I	GGNCC	3 cut(s)	493, 669, 873
AsuHPI	GGTGA	2 cut(s)	110, 811
AvaII	GGWCC	2 cut(s)	669, 873
BalI	TGGCCA	1 cut(s)	422
BamHI	GGATCC	1 cut(s)	526
BanII	GRGCYC	1 cut(s)	327
BccI	CCATC	2 cut(s)	213, 660
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	3 cut(s)	69, 134, 291
BclI	TGATCA	2 cut(s)	190, 259
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	2 cut(s)	501, 737
BfmI	CTRYAG	1 cut(s)	375
BfrI	CTTAAG	1 cut(s)	772
BisI	GCNGC	1 cut(s)	659
BlsI	GCNGC	1 cut(s)	660
Bme1390I	CCNGG	3 cut(s)	69, 134, 291
Bme18I	GGWCC	2 cut(s)	669, 873
BmgT120I	GGNCC	3 cut(s)	493, 669, 873
BmiI	GGNNCC	6 cut(s)	301, 494, 528, 538, 671, 707
BmrFI	CCNGG	3 cut(s)	69, 134, 291
BmrI	ACTGGG	2 cut(s)	12, 634
BmsI	GCATC	2 cut(s)	254, 405
BmuI	ACTGGG	2 cut(s)	12, 634
BoxI	GACNNNNGTC	1 cut(s)	597
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpmI	CTGGAG	2 cut(s)	387, 616
BpuEI	CTTGAG	1 cut(s)	828
BsaI	GGTCTC	1 cut(s)	405
BsaJI	CCNNGG	3 cut(s)	132, 133, 716
Bsc4I	CCNNNNNNNGG	6 cut(s)	93, 138, 139, 296, 654, 702
Bse1I	ACTGG	4 cut(s)	18, 94, 599, 629
Bse3DI	GCAATG	2 cut(s)	360, 472
BseBI	CCWGG	3 cut(s)	69, 134, 291
BseDI	CCNNGG	3 cut(s)	132, 133, 716
BseGI	GGATG	1 cut(s)	671
BseLI	CCNNNNNNNGG	6 cut(s)	93, 138, 139, 296, 654, 702
BseMI	GCAATG	2 cut(s)	360, 472
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	4 cut(s)	18, 94, 599, 629
BshFI	GGCC	3 cut(s)	422, 495, 621
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	6 cut(s)	93, 138, 139, 296, 654, 702
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	3 cut(s)	422, 495, 621
Bso31I	GGTCTC	1 cut(s)	405
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
BspACI	CCGC	3 cut(s)	112, 426, 658
BspANI	GGCC	3 cut(s)	422, 495, 621
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	6 cut(s)	301, 494, 528, 538, 671, 707
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	5 cut(s)	259, 396, 521, 534, 649
BspTI	CTTAAG	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	360, 472
BsrI	ACTGG	4 cut(s)	18, 94, 599, 629
BssECI	CCNNGG	3 cut(s)	132, 133, 716
BssMI	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
BssT1I	CCWWGG	1 cut(s)	716
Bst2UI	CCWGG	3 cut(s)	69, 134, 291
Bst4CI	ACNGT	1 cut(s)	571
BstAFI	CTTAAG	1 cut(s)	772
BstC8I	GCNNGC	2 cut(s)	420, 424
BstDEI	CTNAG	3 cut(s)	77, 306, 488
BstEII	GGTNACC	1 cut(s)	98
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstF5I	GGATG	1 cut(s)	671
BstKTI	GATC	7 cut(s)	193, 254, 262, 391, 529, 644, 946
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
BstMWI	GCNNNNNNNGC	1 cut(s)	501
BstNI	CCWGG	3 cut(s)	69, 134, 291
BstPAI	GACNNNNGTC	1 cut(s)	597
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	67, 132, 289
BstSFI	CTRYAG	1 cut(s)	375
BstX2I	RGATCY	4 cut(s)	251, 388, 526, 641
BstYI	RGATCY	4 cut(s)	251, 388, 526, 641
BsuRI	GGCC	3 cut(s)	422, 495, 621
BtsCI	GGATG	1 cut(s)	671
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	4 cut(s)	87, 303, 322, 622
Cac8I	GCNNGC	2 cut(s)	420, 424
CaiI	CAGNNNCTG	2 cut(s)	254, 731
CciI	TCATGA	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	493, 669, 873
Csp6I	GTAC	2 cut(s)	477, 892
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	5 cut(s)	32, 124, 230, 278, 701
CviQI	GTAC	2 cut(s)	477, 892
DdeI	CTNAG	3 cut(s)	77, 306, 488
DpnI	GATC	7 cut(s)	192, 253, 261, 390, 528, 643, 945
DpnII	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
DraIII	CACNNNGTG	1 cut(s)	109
EaeI	YGGCCR	2 cut(s)	420, 619
Eco130I	CCWWGG	1 cut(s)	716
Eco24I	GRGCYC	1 cut(s)	327
Eco31I	GGTCTC	1 cut(s)	405
Eco47I	GGWCC	2 cut(s)	669, 873
Eco91I	GGTNACC	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	67, 132, 289
EcoT14I	CCWWGG	1 cut(s)	716
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	716
FaeI	CATG	5 cut(s)	35, 127, 233, 281, 704
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	5 cut(s)	31, 123, 229, 277, 700
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	190, 259
Fnu4HI	GCNGC	1 cut(s)	659
FokI	GGATG	1 cut(s)	678
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	1 cut(s)	659
FspBI	CTAG	2 cut(s)	501, 737
GluI	GCNGC	1 cut(s)	659
GsuI	CTGGAG	2 cut(s)	387, 616
HaeIII	GGCC	3 cut(s)	422, 495, 621
Hin1II	CATG	5 cut(s)	35, 127, 233, 281, 704
HinfI	GANTC	4 cut(s)	158, 410, 598, 829
HphI	GGTGA	2 cut(s)	110, 811
Hpy166II	GTNNAC	2 cut(s)	74, 873
Hpy188I	TCNGA	4 cut(s)	256, 531, 559, 948
Hpy8I	GTNNAC	2 cut(s)	74, 873
HpyAV	CCTTC	2 cut(s)	550, 842
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	9 cut(s)	8, 43, 179, 245, 353, 377, 785, 860, 909
HpyF10VI	GCNNNNNNNGC	1 cut(s)	501
HpyF3I	CTNAG	3 cut(s)	77, 306, 488
Hsp92II	CATG	5 cut(s)	35, 127, 233, 281, 704
Ksp22I	TGATCA	2 cut(s)	190, 259
Kzo9I	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
LmnI	GCTCC	1 cut(s)	542
LweI	GCATC	2 cut(s)	254, 405
MaeI	CTAG	2 cut(s)	501, 737
MaeIII	GTNAC	3 cut(s)	98, 517, 590
MalI	GATC	7 cut(s)	192, 253, 261, 390, 528, 643, 945
MboI	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
MboII	GAAGA	1 cut(s)	167
MfeI	CAATTG	1 cut(s)	394
MflI	RGATCY	4 cut(s)	251, 388, 526, 641
MhlI	GDGCHC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 573
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	2 cut(s)	404, 607
MnlI	CCTC	6 cut(s)	28, 194, 276, 359, 737, 819
Mox20I	TGGCCA	1 cut(s)	422
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	4 cut(s)	510, 773, 807, 822
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	426
MspCI	CTTAAG	1 cut(s)	772
MspR9I	CCNGG	3 cut(s)	69, 134, 291
MunI	CAATTG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	3 cut(s)	69, 134, 291
MwoI	GCNNNNNNNGC	1 cut(s)	501
NdeII	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
NlaIII	CATG	5 cut(s)	35, 127, 233, 281, 704
NlaIV	GGNNCC	6 cut(s)	301, 494, 528, 538, 671, 707
NmuCI	GTSAC	2 cut(s)	98, 590
PagI	TCATGA	1 cut(s)	277
PasI	CCCWGGG	1 cut(s)	133
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	2 cut(s)	158, 829
PkrI	GCNGC	1 cut(s)	660
PleI	GAGTC	2 cut(s)	404, 606
PpsI	GAGTC	2 cut(s)	404, 606
PshAI	GACNNNNGTC	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	67, 132, 289
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	67, 132, 289
PspN4I	GGNNCC	6 cut(s)	301, 494, 528, 538, 671, 707
PspPI	GGNCC	3 cut(s)	493, 669, 873
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	2 cut(s)	254, 731
PsuI	RGATCY	4 cut(s)	251, 388, 526, 641
RsaI	GTAC	2 cut(s)	478, 893
RsaNI	GTAC	2 cut(s)	477, 892
SaqAI	TTAA	4 cut(s)	510, 773, 807, 822
SatI	GCNGC	1 cut(s)	659
Sau3AI	GATC	7 cut(s)	190, 251, 259, 388, 526, 641, 943
Sau96I	GGNCC	3 cut(s)	493, 669, 873
SchI	GAGTC	2 cut(s)	404, 607
ScrFI	CCNGG	3 cut(s)	69, 134, 291
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	7 cut(s)	111, 295, 506, 650, 733, 790, 865
SfaNI	GCATC	2 cut(s)	254, 405
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	669, 873
SmlI	CTYRAG	2 cut(s)	772, 843
SmoI	CTYRAG	2 cut(s)	772, 843
Sse9I	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 573
SsiI	CCGC	3 cut(s)	112, 426, 658
SspMI	CTAG	2 cut(s)	501, 737
StyD4I	CCNGG	3 cut(s)	67, 132, 289
StyI	CCWWGG	1 cut(s)	716
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	336, 413
TasI	AATT	7 cut(s)	45, 208, 267, 273, 340, 394, 573
TatI	WGTACW	1 cut(s)	476
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	2 cut(s)	158, 829
Tru1I	TTAA	4 cut(s)	510, 773, 807, 822
Tru9I	TTAA	4 cut(s)	510, 773, 807, 822
TscAI	CASTG	4 cut(s)	94, 310, 322, 629
TseFI	GTSAC	2 cut(s)	98, 590
Tsp45I	GTSAC	2 cut(s)	98, 590
TspDTI	ATGAA	5 cut(s)	140, 168, 266, 532, 676
TspGWI	ACGGA	2 cut(s)	176, 879
TspRI	CASTG	4 cut(s)	94, 310, 322, 629
Vha464I	CTTAAG	1 cut(s)	772
VpaK11BI	GGWCC	2 cut(s)	669, 873
XagI	CCTNNNNNAGG	1 cut(s)	652
XapI	RAATTY	1 cut(s)	45
XbaI	TCTAGA	1 cut(s)	736
XspI	CTAG	2 cut(s)	501, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.