Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017268

Physical Location & Seq

Genomic Coordinates Reverse (-)

5292375 .. 5293961

Gene Structure 1587 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGATTGCAGAAAAGCCCAGTTGGATTAGGCATGAGGGTTTGCAAATTTTCTCCATTGATGTTCAGCCTGGTGGACTTAGGGTTGCCACTGGTGGGGGTGACCACAAGGTGCGGGTATGGAACATGAAATCCCTGGGCAGGGATTTCTCAAATGAAGAATCAGCCCAAAGGCTACTTGCAACCCTCCGTGATCACTTCGGTTCTGTGAATTGTGTTAGGTGGGCTAAGCATGGTCGCTATCTTGCATCAGGATCTGATGATCAAGTACTTCTAATTCATGAGAGGAAGCCAGGTTCAGGAACCACTGAGTTTGGCAGTGGAGAGCCCCTGATGTCGAGAATTGGAAAGTTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003682 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006336 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0030874 GO:0030875 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031491 GO:0031497 GO:0031935 GO:0031974 GO:0031981 GO:0033043 GO:0033044 GO:0034622 GO:0034724 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0044877 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060968 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0071103 GO:0071824 GO:0071840 GO:0080090 GO:0140110 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hira WD40

Protein Analysis

118

Amino Acids

13.07

Weight (kDa)

9.35

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_CAF1B_HIR1	PF24105	11 - 99	3.8e-15	CAF1B/HIR1 beta-propeller domain
WD40_Prp19	PF24814	13 - 89	1.9e-07	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	14 - 98	4.7e-09	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	15 - 98	2.9e-10	WDR5 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	28 - 94	2.7e-07	TEP-1 second beta-propeller
WD40	PF00400	57 - 91	1.5e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0017268)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g24580 FvH4_4g17140 FvH4_6g27412
prunus_persica	Prupe.8G049400_v2.0.a1
pyrus_communis	pycom05g03100
rosa_chinensis	RchiOBHm_Chr1g0317741
rosa_multiflora	Rmu_sc0002922.1_g000015 Rmu_sc0011228.1_g000009 Rmu_sc0015304.1_g000004
rosa_samantha	Rh1CG026700 Rh1CG026800 Rh1DG041900
rosa_wichuraiana	Rw0G014930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	1 cut(s)	259
AcsI	RAATTY	1 cut(s)	45
AdeI	CACNNNGTG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
AjnI	CCWGG	3 cut(s)	67, 132, 289
AloI	GAACNNNNNNTCC	4 cut(s)	113, 145, 277, 309
AlwI	GGATC	1 cut(s)	259
AlwNI	CAGNNNCTG	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	45
AsuHPI	GGTGA	1 cut(s)	110
BanII	GRGCYC	1 cut(s)	327
BciT130I	CCWGG	3 cut(s)	69, 134, 291
BclI	TGATCA	2 cut(s)	190, 259
BlpI	GCTNAGC	1 cut(s)	225
BmcAI	AGTACT	1 cut(s)	267
Bme1390I	CCNGG	3 cut(s)	69, 134, 291
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	3 cut(s)	69, 134, 291
BmrI	ACTGGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	132, 133
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
Bse1I	ACTGG	2 cut(s)	18, 94
BseBI	CCWGG	3 cut(s)	69, 134, 291
BseDI	CCNNGG	2 cut(s)	132, 133
BseLI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	18, 94
BslI	CCNNNNNNNGG	4 cut(s)	93, 138, 139, 296
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	3 cut(s)	190, 251, 259
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	298
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	301
BspPI	GGATC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	18, 94
BssECI	CCNNGG	2 cut(s)	132, 133
BssMI	GATC	3 cut(s)	190, 251, 259
Bst2UI	CCWGG	3 cut(s)	69, 134, 291
BstDEI	CTNAG	3 cut(s)	77, 225, 306
BstEII	GGTNACC	1 cut(s)	98
BstKTI	GATC	3 cut(s)	193, 254, 262
BstMBI	GATC	3 cut(s)	190, 251, 259
BstNI	CCWGG	3 cut(s)	69, 134, 291
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	67, 132, 289
BstX2I	RGATCY	1 cut(s)	251
BstYI	RGATCY	1 cut(s)	251
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	3 cut(s)	87, 303, 322
CaiI	CAGNNNCTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	266
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	4 cut(s)	32, 124, 230, 278
CviJI	RGCY	7 cut(s)	16, 67, 164, 172, 224, 289, 325
CviKI_1	RGCY	7 cut(s)	16, 67, 164, 172, 224, 289, 325
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	3 cut(s)	77, 225, 306
DpnI	GATC	3 cut(s)	192, 253, 261
DpnII	GATC	3 cut(s)	190, 251, 259
DraIII	CACNNNGTG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
EcoRII	CCWGG	3 cut(s)	67, 132, 289
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	4 cut(s)	35, 127, 233, 281
FaiI	YATR	5 cut(s)	33, 118, 125, 231, 279
FatI	CATG	4 cut(s)	31, 123, 229, 277
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	190, 259
FriOI	GRGCYC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	35, 127, 233, 281
HinfI	GANTC	1 cut(s)	158
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	249, 278, 297, 336
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4V	TGCA	5 cut(s)	8, 43, 179, 245, 352
HpyF3I	CTNAG	3 cut(s)	77, 225, 306
Hsp92II	CATG	4 cut(s)	35, 127, 233, 281
Ksp22I	TGATCA	2 cut(s)	190, 259
Kzo9I	GATC	3 cut(s)	190, 251, 259
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	3 cut(s)	192, 253, 261
MboI	GATC	3 cut(s)	190, 251, 259
MboII	GAAGA	1 cut(s)	167
MflI	RGATCY	1 cut(s)	251
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	4 cut(s)	45, 208, 273, 339
MnlI	CCTC	3 cut(s)	28, 194, 276
MspR9I	CCNGG	3 cut(s)	69, 134, 291
MvaI	CCWGG	3 cut(s)	69, 134, 291
NdeII	GATC	3 cut(s)	190, 251, 259
NlaIII	CATG	4 cut(s)	35, 127, 233, 281
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	277
PasI	CCCWGGG	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	158
Psp6I	CCWGG	3 cut(s)	67, 132, 289
PspEI	GGTNACC	1 cut(s)	98
PspGI	CCWGG	3 cut(s)	67, 132, 289
PspN4I	GGNNCC	1 cut(s)	301
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	251
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
Sau3AI	GATC	3 cut(s)	190, 251, 259
ScaI	AGTACT	1 cut(s)	267
ScrFI	CCNGG	3 cut(s)	69, 134, 291
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	3 cut(s)	111, 221, 295
SfaNI	GCATC	1 cut(s)	254
Sse9I	AATT	4 cut(s)	45, 208, 273, 339
SsiI	CCGC	1 cut(s)	112
StyD4I	CCNGG	3 cut(s)	67, 132, 289
TaqI	TCGA	1 cut(s)	335
TasI	AATT	4 cut(s)	45, 208, 273, 339
TatI	WGTACW	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	158
TscAI	CASTG	3 cut(s)	94, 310, 322
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	140, 168, 266
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	3 cut(s)	94, 310, 322
XapI	RAATTY	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.