FvH4_4g17780

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013656
Physical Location & Seq
Forward (+)
21756116 .. 21759722
3607 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g17780.t3

Sequence Viewer

Length: 1221 bp
ATGGAGATGGGTTCAGTTGAAGAAAACCGCCAAGTAGATTTCAATGAATATGAACATGGTGATCCCTCAGTTTCTCTAGAAGCTTCTGCTATATGTGATGTCTATGGTGAACCCAAGGTACTTCCTCGAGTTGGAGATGAATATCAGATACAACATGACAACTCAAAACTCAATGCCGAGCCAATGGATATTAAGTCTGATCAGAGGAAGATATCAAGTAACTCGATGAAGTTGGGATTGAAACAAGAAAAGATGAGTAAAATGCATGAAAAGCGTAAGGGAAGACGGTACTTCCTGGCTCTTGGTTCCTCAGTTGACCACTGGAGTGACATAGAGAAAGATAGTTTTCTTCTTGGTTTATATATATTTGGGAAGAACCTTGTTCAGGTGAAGAAATTTATTGGGAGTAAACAGATGGGCGATATATTGTCATTCTACTATGGAAAGTTTTATAGGTCTTGCAGCTACATAAGATGGGCAGAATGTAAAAGAAAGAAGAGCAAAACAGGTAAACTAGGAGAACAATTGTTTACTGGATTGAGGCAAGAAGTGTTGTTATCTCGTTTGCTTCCTCAGTTGTCAGAAGAAGACCAAACTATTTTACTTGAGGTATCGAAGATATATCGAGAAGAAAAAATGTTACTAGAAGAGTATGTATTCATCATAAAGGCTAAAGTCGGACTGAGTGCTTTTGTACAGGCAATAGGAATTGGTAAAGTGAAGCAAGATCTAACAGTGCTTAGGAAAAGACCAGCTCGTGTAGTTCATGGTACCCCTTTGGCGAACGGTGGTTTAGTTTCTCCAGAGTTGAAGGGTAAGAATCAGCTATTAGGTGTCTTTTCGCCACTGGTGGTGCTGACTGCTGACCTTTCTTACTTGTACAATATCTATTCTGTAGCAGCCATGAATCCCAGTAAAAGCTCAAAAAAGAGCAAGAAGAGAGGAGCTGATGAAGTTCCCCAAGCTGAACCAAGAAGAGATAAAAAGGTGGGCTCTGGGCCTTCTGCAACCAGCTCACATCAAGCTTCTCTGGTCCCCTTTGTCAATTCTATAATGATGTCTGTTAGAGAGCCAGCTAAGGCTATGGACCCTATTGAGCATCTCCAGAGGTCCTATGCCCAGGCTGCACAGGTCTTGTTCGACCAATTTCATGCCTATGGAGATGTCATCGGGAAGCTGAAGAAGGACAGCATTACAAGAACCGAGATGAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

407

Amino Acids

45.77

Weight (kDa)

9.4

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 182 - 312 4.2e-55 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 770
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 1 cut(s) 1199
AfaI GTAC 5 cut(s) 120, 290, 696, 772, 881
AfiI CCNNNNNNNGG 2 cut(s) 131, 385
AgsI TTSAA 4 cut(s) 20, 43, 241, 811
AjnI CCWGG 2 cut(s) 294, 1119
AleI CACNNNNGTG 1 cut(s) 324
AlwI GGATC 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 998
ApeKI GCWGC 3 cut(s) 462, 899, 1124
ApoI RAATTY 1 cut(s) 395
Asp718I GGTACC 1 cut(s) 770
AspS9I GGNCC 4 cut(s) 998, 1033, 1087, 1110
AsuHPI GGTGA 3 cut(s) 71, 119, 400
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 3 cut(s) 1033, 1087, 1110
BanI GGYRCC 1 cut(s) 770
BanII GRGCYC 1 cut(s) 995
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 2 cut(s) 289, 594
BbvI GCAGC 3 cut(s) 474, 911, 1111
BccI CCATC 2 cut(s) 409, 468
BciT130I CCWGG 2 cut(s) 296, 1121
BclI TGATCA 1 cut(s) 199
BfaI CTAG 3 cut(s) 77, 515, 644
BfmI CTRYAG 1 cut(s) 894
BglII AGATCT 1 cut(s) 727
BisI GCNGC 3 cut(s) 463, 900, 1125
BlsI GCNGC 3 cut(s) 464, 901, 1126
Bme1390I CCNGG 2 cut(s) 296, 1121
Bme18I GGWCC 3 cut(s) 1033, 1087, 1110
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 4 cut(s) 998, 1033, 1087, 1110
BmiI GGNNCC 4 cut(s) 307, 772, 1035, 1089
BmrFI CCNGG 2 cut(s) 296, 1121
BmrI ACTGGG 1 cut(s) 906
BmsI GCATC 1 cut(s) 1108
BmuI ACTGGG 1 cut(s) 906
BpiI GAAGAC 2 cut(s) 289, 594
BpmI CTGGAG 3 cut(s) 343, 786, 1088
Bpu10I CCTNAGC 2 cut(s) 740, 1077
BpuEI CTTGAG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 114, 1119
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 385
Bse1I ACTGG 4 cut(s) 326, 538, 852, 912
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 2 cut(s) 296, 1121
BseDI CCNNGG 2 cut(s) 114, 1119
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 2 cut(s) 131, 385
BseMII CTCAG 4 cut(s) 81, 324, 587, 674
BseNI ACTGG 4 cut(s) 326, 538, 852, 912
BseRI GAGGAG 1 cut(s) 957
BseXI GCAGC 3 cut(s) 474, 911, 1111
BsgI GTGCAG 1 cut(s) 1110
BshFI GGCC 1 cut(s) 1000
BshNI GGYRCC 1 cut(s) 770
BsiHKCI CYCGRG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 2 cut(s) 131, 385
BsmFI GGGAC 1 cut(s) 1019
BsnI GGCC 1 cut(s) 1000
BsoBI CYCGRG 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 995
Bsp1407I TGTACA 2 cut(s) 694, 879
Bsp143I GATC 3 cut(s) 61, 199, 727
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 1000
BspCNI CTCAG 4 cut(s) 80, 323, 586, 675
BspLI GGNNCC 4 cut(s) 307, 772, 1035, 1089
BspPI GGATC 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 491
BspT107I GGYRCC 1 cut(s) 770
BsrGI TGTACA 2 cut(s) 694, 879
BsrI ACTGG 4 cut(s) 326, 538, 852, 912
BssECI CCNNGG 2 cut(s) 114, 1119
BssMI GATC 3 cut(s) 61, 199, 727
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 2 cut(s) 296, 1121
Bst4CI ACNGT 3 cut(s) 288, 736, 788
Bst6I CTCTTC 4 cut(s) 491, 642, 932, 970
BstAUI TGTACA 2 cut(s) 694, 879
BstC8I GCNNGC 1 cut(s) 1074
BstDEI CTNAG 6 cut(s) 67, 310, 573, 683, 740, 1077
BstENI CCTNNNNNAGG 1 cut(s) 383
BstKTI GATC 3 cut(s) 64, 202, 730
BstMBI GATC 3 cut(s) 61, 199, 727
BstMWI GCNNNNNNNGC 2 cut(s) 271, 1124
BstNI CCWGG 2 cut(s) 296, 1121
BstSCI CCNGG 2 cut(s) 294, 1119
BstSFI CTRYAG 1 cut(s) 894
BstV1I GCAGC 3 cut(s) 474, 911, 1111
BstV2I GAAGAC 2 cut(s) 289, 594
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 1 cut(s) 1000
BtsIMutI CAGTG 3 cut(s) 319, 741, 845
Cac8I GCNNGC 1 cut(s) 1074
Cfr13I GGNCC 4 cut(s) 998, 1033, 1087, 1110
Csp6I GTAC 5 cut(s) 119, 289, 695, 771, 880
CviAII CATG 6 cut(s) 56, 155, 266, 767, 904, 1151
CviQI GTAC 5 cut(s) 119, 289, 695, 771, 880
DdeI CTNAG 6 cut(s) 67, 310, 573, 683, 740, 1077
DpnI GATC 3 cut(s) 63, 201, 729
DpnII GATC 3 cut(s) 61, 199, 727
Eam1104I CTCTTC 4 cut(s) 491, 642, 932, 970
EarI CTCTTC 4 cut(s) 491, 642, 932, 970
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 995
Eco32I GATATC 1 cut(s) 213
Eco47I GGWCC 3 cut(s) 1033, 1087, 1110
Eco57I CTGAAG 1 cut(s) 1199
Eco88I CYCGRG 1 cut(s) 126
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 1110
EcoRII CCWGG 2 cut(s) 294, 1119
EcoRV GATATC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 995
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 59, 158, 269, 770, 907, 1154
FaqI GGGAC 1 cut(s) 1019
FatI CATG 6 cut(s) 55, 154, 265, 766, 903, 1150
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 463, 900, 1125
FriOI GRGCYC 1 cut(s) 995
Fsp4HI GCNGC 3 cut(s) 463, 900, 1125
FspBI CTAG 3 cut(s) 77, 515, 644
GluI GCNGC 3 cut(s) 463, 900, 1125
GsuI CTGGAG 3 cut(s) 343, 786, 1088
HaeIII GGCC 1 cut(s) 1000
Hin1II CATG 6 cut(s) 59, 158, 269, 770, 907, 1154
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 2 cut(s) 81, 1023
HinfI GANTC 2 cut(s) 820, 907
HphI GGTGA 3 cut(s) 71, 119, 400
Hpy166II GTNNAC 5 cut(s) 110, 316, 410, 512, 531
Hpy188I TCNGA 5 cut(s) 147, 199, 204, 583, 680
Hpy188III TCNNGA 5 cut(s) 77, 626, 803, 1105, 1171
Hpy8I GTNNAC 5 cut(s) 110, 316, 410, 512, 531
HpyAV CCTTC 4 cut(s) 805, 1011, 1177, 1207
HpyCH4III ACNGT 3 cut(s) 288, 736, 788
HpyCH4V TGCA 4 cut(s) 265, 462, 1007, 1127
HpyF10VI GCNNNNNNNGC 2 cut(s) 271, 1124
HpyF3I CTNAG 6 cut(s) 67, 310, 573, 683, 740, 1077
Hsp92II CATG 6 cut(s) 59, 158, 269, 770, 907, 1154
KpnI GGTACC 1 cut(s) 774
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 3 cut(s) 61, 199, 727
LguI GCTCTTC 1 cut(s) 491
LmnI GCTCC 1 cut(s) 944
Lsp1109I GCAGC 3 cut(s) 474, 911, 1111
LweI GCATC 1 cut(s) 1108
MaeI CTAG 3 cut(s) 77, 515, 644
MaeIII GTNAC 3 cut(s) 218, 326, 639
MalI GATC 3 cut(s) 63, 201, 729
MboI GATC 3 cut(s) 61, 199, 727
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 1 cut(s) 995
MluCI AATT 5 cut(s) 395, 524, 708, 1045, 1145
MmeI TCCRAC 2 cut(s) 112, 658
MnlI CCTC 9 cut(s) 76, 135, 198, 319, 534, 582, 601, 935, 1101
Mph1103I ATGCAT 1 cut(s) 267
MseI TTAA 1 cut(s) 192
MslI CAYNNNNRTG 2 cut(s) 324, 1155
MspR9I CCNGG 2 cut(s) 296, 1121
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 2 cut(s) 296, 1121
MwoI GCNNNNNNNGC 2 cut(s) 271, 1124
NdeII GATC 3 cut(s) 61, 199, 727
NlaIII CATG 6 cut(s) 59, 158, 269, 770, 907, 1154
NlaIV GGNNCC 4 cut(s) 307, 772, 1035, 1089
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 326
NsiI ATGCAT 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 126
PciSI GCTCTTC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 820, 907
PkrI GCNGC 3 cut(s) 464, 901, 1126
PpuMI RGGWCCY 1 cut(s) 1110
Psp5II RGGWCCY 1 cut(s) 1110
Psp6I CCWGG 2 cut(s) 294, 1119
PspGI CCWGG 2 cut(s) 294, 1119
PspN4I GGNNCC 4 cut(s) 307, 772, 1035, 1089
PspPI GGNCC 4 cut(s) 998, 1033, 1087, 1110
PspPPI RGGWCCY 1 cut(s) 1110
PspXI VCTCGAGB 1 cut(s) 126
PsrI GAACNNNNNNTAC 2 cut(s) 102, 134
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 5 cut(s) 120, 290, 696, 772, 881
RsaNI GTAC 5 cut(s) 119, 289, 695, 771, 880
RseI CAYNNNNRTG 2 cut(s) 324, 1155
SapI GCTCTTC 1 cut(s) 491
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 3 cut(s) 463, 900, 1125
Sau3AI GATC 3 cut(s) 61, 199, 727
Sau96I GGNCC 4 cut(s) 998, 1033, 1087, 1110
ScrFI CCNGG 2 cut(s) 296, 1121
SduI GDGCHC 1 cut(s) 995
SfaNI GCATC 1 cut(s) 1108
SfcI CTRYAG 1 cut(s) 894
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 3 cut(s) 1033, 1087, 1110
SlaI CTCGAG 1 cut(s) 126
SmiMI CAYNNNNRTG 2 cut(s) 324, 1155
SmlI CTYRAG 2 cut(s) 126, 605
SmoI CTYRAG 2 cut(s) 126, 605
Sse9I AATT 5 cut(s) 395, 524, 708, 1045, 1145
SsiI CCGC 1 cut(s) 28
SspMI CTAG 3 cut(s) 77, 515, 644
StyD4I CCNGG 2 cut(s) 294, 1119
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 288, 736, 788
TaqI TCGA 5 cut(s) 127, 224, 614, 625, 1140
TasI AATT 5 cut(s) 395, 524, 708, 1045, 1145
TatI WGTACW 2 cut(s) 694, 879
TfiI GAWTC 2 cut(s) 820, 907
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 3 cut(s) 326, 741, 852
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 3 cut(s) 462, 899, 1124
Tsp45I GTSAC 1 cut(s) 326
TspRI CASTG 3 cut(s) 326, 741, 852
VpaK11BI GGWCC 3 cut(s) 1033, 1087, 1110
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 1 cut(s) 395
XbaI TCTAGA 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 3 cut(s) 77, 515, 644
Zsp2I ATGCAT 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.