Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508841.1

Orthogroup ID

OG0013656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1547 .. 2611

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508841.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgttactagaagcatatgtattcattgtaaaggctaaagtcggactgagtgcttttgtacaggcagtaggaatcgtgcttcggaaaagaccggctcctttagctcacggtacccctttggcgaactgtggtttagtttccccagagttgaaggctgccatgactcccagtaaaagatcaaagaaggccaagaagcgaggagctgatgaagtcccccaagctgaactgagaagagataaaagggtgagctctgggccttctacaaccagctcagatcaagcttctctggtttcctttgtcaattctataatgaagtctgttagagagccagccaagggtatgaaccctatcgagcatctccagaggtcctatgcccaggccgcgcaggtcttgttcgaccaatttcatgcctatggagatgtcattggggagttgcagaaggagagcattacaagagccgagctggagaaggaacgggccaaagtgaaagatctggagacacagcttggctttctcaaaagagacttagagaagacaaagactaaggtggatgagctgaatgctgagctcatctgtgactcagggggtgcagaggagaggtataaggctgccgtagagcacttcaagaagtccaaggagtttacccagatgaaaaatgacctgattaaccatgggatcattcggtgtatgaatatcatgaatgcctacttccccaacctggaatggaaatgcctggatggtccacctcctgatgataaagatttggaggcgaaagaggatgatcgaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

263

Amino Acids

29.33

Weight (kDa)

8.87

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17780 FvH4_4g17780 FvH4_4g17780 FvH4_4g17780
rosa_chinensis	RchiOBHm_Chr4g0421731
rosa_laevigata	RLG00000007654
rosa_multiflora	Rmu_co8508841.1_g000001 Rmu_sc0028826.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363980 Rroxscaffold_5G00364020
rosa_rugosa	Rorug04G0175300 Rorug04G0175400
rosa_samantha	Rh4AG234500 Rh4BG237500 Rh4BG237900 Rh4CG249500 Rh4DG233400
rosa_wichuraiana	Rw4G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	110
AccII	CGCG	1 cut(s)	383
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	683
AfaI	GTAC	2 cut(s)	60, 112
AfiI	CCNNNNNNNGG	2 cut(s)	335, 718
AgsI	TTSAA	2 cut(s)	151, 625
AjnI	CCWGG	3 cut(s)	375, 717, 732
Alw21I	GWGCWC	3 cut(s)	251, 570, 621
Alw26I	GTCTC	2 cut(s)	491, 516
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	4 cut(s)	186, 254, 378, 477
ApeKI	GCWGC	2 cut(s)	155, 608
Asp718I	GGTACC	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	4 cut(s)	254, 366, 477, 740
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	2 cut(s)	366, 740
BanI	GGYRCC	1 cut(s)	110
BanII	GRGCYC	2 cut(s)	251, 570
BbsI	GAAGAC	1 cut(s)	539
Bbv12I	GWGCWC	3 cut(s)	251, 570, 621
BbvI	GCAGC	2 cut(s)	142, 595
BccI	CCATC	1 cut(s)	731
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	3 cut(s)	377, 719, 734
BcoDI	GTCTC	2 cut(s)	491, 516
BfaI	CTAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	3 cut(s)	156, 381, 609
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	157, 382, 610
Bme1390I	CCNGG	3 cut(s)	377, 719, 734
Bme18I	GGWCC	2 cut(s)	366, 740
BmgT120I	GGNCC	4 cut(s)	254, 366, 477, 740
BmiI	GGNNCC	2 cut(s)	96, 112
BmrFI	CCNGG	3 cut(s)	377, 719, 734
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	364
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	539
BpmI	CTGGAG	3 cut(s)	344, 485, 515
Bpu1102I	GCTNAGC	1 cut(s)	564
BsaJI	CCNNGG	4 cut(s)	333, 375, 633, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	335, 718
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	3 cut(s)	377, 719, 734
BseDI	CCNNGG	4 cut(s)	333, 375, 633, 670
BseGI	GGATG	3 cut(s)	556, 742, 784
BseLI	CCNNNNNNNGG	2 cut(s)	335, 718
BseMII	CTCAG	5 cut(s)	38, 218, 285, 555, 594
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	2 cut(s)	213, 608
BseXI	GCAGC	2 cut(s)	142, 595
BsgI	GTGCAG	1 cut(s)	609
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	4 cut(s)	188, 256, 380, 479
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	3 cut(s)	251, 570, 621
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	335, 718
BsmAI	GTCTC	2 cut(s)	491, 516
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	2 cut(s)	565, 706
BsnI	GGCC	4 cut(s)	188, 256, 380, 479
Bsp1286I	GDGCHC	3 cut(s)	251, 570, 621
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	5 cut(s)	176, 274, 490, 675, 781
Bsp1720I	GCTNAGC	1 cut(s)	564
Bsp19I	CCATGG	1 cut(s)	670
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	4 cut(s)	188, 256, 380, 479
BspCNI	CTCAG	5 cut(s)	39, 219, 284, 556, 593
BspFNI	CGCG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	696
BspLI	GGNNCC	2 cut(s)	96, 112
BspMI	ACCTGC	1 cut(s)	376
BspPI	GGATC	1 cut(s)	683
BspT107I	GGYRCC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	168
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	4 cut(s)	333, 375, 633, 670
BssMI	GATC	5 cut(s)	176, 274, 490, 675, 781
BssT1I	CCWWGG	3 cut(s)	333, 633, 670
Bst2UI	CCWGG	3 cut(s)	377, 719, 734
Bst4CI	ACNGT	2 cut(s)	110, 128
Bst6I	CTCTTC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	7 cut(s)	47, 227, 271, 526, 543, 564, 580
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	3 cut(s)	556, 742, 784
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	5 cut(s)	179, 277, 493, 678, 784
BstMAI	GTCTC	2 cut(s)	491, 516
BstMBI	GATC	5 cut(s)	176, 274, 490, 675, 781
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 380
BstNI	CCWGG	3 cut(s)	377, 719, 734
BstSCI	CCNGG	3 cut(s)	375, 717, 732
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	142, 595
BstV2I	GAAGAC	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	4 cut(s)	188, 256, 380, 479
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	3 cut(s)	556, 742, 784
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	696
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	4 cut(s)	254, 366, 477, 740
Csp6I	GTAC	2 cut(s)	59, 111
CviAII	CATG	5 cut(s)	160, 407, 671, 697, 789
CviQI	GTAC	2 cut(s)	59, 111
DdeI	CTNAG	7 cut(s)	47, 227, 271, 526, 543, 564, 580
DpnI	GATC	5 cut(s)	178, 276, 492, 677, 783
DpnII	GATC	5 cut(s)	176, 274, 490, 675, 781
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Ecl136II	GAGCTC	2 cut(s)	249, 568
Eco130I	CCWWGG	3 cut(s)	333, 633, 670
Eco24I	GRGCYC	2 cut(s)	251, 570
Eco47I	GGWCC	2 cut(s)	366, 740
Eco53kI	GAGCTC	2 cut(s)	249, 568
EcoICRI	GAGCTC	2 cut(s)	249, 568
EcoO109I	RGGNCCY	1 cut(s)	366
EcoRII	CCWGG	3 cut(s)	375, 717, 732
EcoT14I	CCWWGG	3 cut(s)	333, 633, 670
EcoT38I	GRGCYC	2 cut(s)	251, 570
ErhI	CCWWGG	3 cut(s)	333, 633, 670
FaeI	CATG	5 cut(s)	163, 410, 674, 700, 792
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	5 cut(s)	159, 406, 670, 696, 788
FauNDI	CATATG	1 cut(s)	16
Fnu4HI	GCNGC	3 cut(s)	156, 381, 609
FokI	GGATG	2 cut(s)	563, 749
FriOI	GRGCYC	2 cut(s)	251, 570
Fsp4HI	GCNGC	3 cut(s)	156, 381, 609
FspBI	CTAG	1 cut(s)	8
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	3 cut(s)	156, 381, 609
GsuI	CTGGAG	3 cut(s)	344, 485, 515
HaeIII	GGCC	4 cut(s)	188, 256, 380, 479
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	5 cut(s)	163, 410, 674, 700, 792
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	3 cut(s)	72, 163, 578
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	642, 743
Hpy188I	TCNGA	3 cut(s)	44, 84, 274
Hpy188III	TCNNGA	5 cut(s)	361, 494, 625, 697, 749
Hpy8I	GTNNAC	2 cut(s)	642, 743
HpyAV	CCTTC	5 cut(s)	145, 178, 267, 433, 463
HpyCH4III	ACNGT	2 cut(s)	110, 128
HpyCH4V	TGCA	2 cut(s)	436, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 380
HpyF3I	CTNAG	7 cut(s)	47, 227, 271, 526, 543, 564, 580
Hsp92II	CATG	5 cut(s)	163, 410, 674, 700, 792
HspAI	GCGC	1 cut(s)	383
KpnI	GGTACC	1 cut(s)	114
Kzo9I	GATC	5 cut(s)	176, 274, 490, 675, 781
LmnI	GCTCC	2 cut(s)	100, 200
Lsp1109I	GCAGC	2 cut(s)	142, 595
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	3, 575
MalI	GATC	5 cut(s)	178, 276, 492, 677, 783
MboI	GATC	5 cut(s)	176, 274, 490, 675, 781
MboII	GAAGA	2 cut(s)	243, 544
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	3 cut(s)	251, 570, 621
MluCI	AATT	2 cut(s)	301, 401
MlyI	GAGTC	2 cut(s)	157, 572
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	7 cut(s)	191, 357, 586, 591, 756, 760, 769
MseI	TTAA	1 cut(s)	666
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	3 cut(s)	377, 719, 734
Mva1269I	GAATGC	2 cut(s)	565, 706
MvaI	CCWGG	3 cut(s)	377, 719, 734
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	101, 380
NcoI	CCATGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	16
NdeII	GATC	5 cut(s)	176, 274, 490, 675, 781
NlaIII	CATG	5 cut(s)	163, 410, 674, 700, 792
NlaIV	GGNNCC	2 cut(s)	96, 112
NmeAIII	GCCGAG	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	575
PagI	TCATGA	1 cut(s)	696
PctI	GAATGC	2 cut(s)	565, 706
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	157, 382, 610
PleI	GAGTC	2 cut(s)	157, 572
PpsI	GAGTC	2 cut(s)	157, 572
PpuMI	RGGWCCY	1 cut(s)	366
Psp124BI	GAGCTC	2 cut(s)	251, 570
Psp5II	RGGWCCY	1 cut(s)	366
Psp6I	CCWGG	3 cut(s)	375, 717, 732
PspGI	CCWGG	3 cut(s)	375, 717, 732
PspN4I	GGNNCC	2 cut(s)	96, 112
PspPI	GGNCC	4 cut(s)	254, 366, 477, 740
PspPPI	RGGWCCY	1 cut(s)	366
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	2 cut(s)	60, 112
RsaNI	GTAC	2 cut(s)	59, 111
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	2 cut(s)	251, 570
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	156, 381, 609
Sau3AI	GATC	5 cut(s)	176, 274, 490, 675, 781
Sau96I	GGNCC	4 cut(s)	254, 366, 477, 740
SchI	GAGTC	2 cut(s)	157, 572
ScrFI	CCNGG	3 cut(s)	377, 719, 734
SduI	GDGCHC	3 cut(s)	251, 570, 621
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	2 cut(s)	366, 740
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	2 cut(s)	301, 401
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	1 cut(s)	8
SstI	GAGCTC	2 cut(s)	251, 570
StyD4I	CCNGG	3 cut(s)	375, 717, 732
StyI	CCWWGG	3 cut(s)	333, 633, 670
TaaI	ACNGT	2 cut(s)	110, 128
TaqI	TCGA	3 cut(s)	351, 396, 784
TasI	AATT	2 cut(s)	301, 401
TatI	WGTACW	1 cut(s)	58
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	2 cut(s)	155, 608
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	8 cut(s)	13, 222, 326, 356, 395, 665, 704, 713
VpaK11BI	GGWCC	2 cut(s)	366, 740
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.