Rroxscaffold_5G00364020

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013656
Physical Location & Seq
Forward (+)
45321818 .. 45323963
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364020.1

Sequence Viewer

Length: 528 bp
ATGAGGATATATGAGGAAGTTAAGAATAAAGAGCATGATTCAGAGGTAGCTTTTGATGTTGCAGTTGGTGTAGCCAACAAAAATGGTTCTTTAAAATGTAAACGCGTCAAACAGATAGAAAGTGACAACTCAAAACTCAGTGCTGAGCCAATGGATATTAAGTCTGCTCATGGGATGATATCAATTAAGAGGGTATCGAAGACATATCGGGAAGAAAAAATGTTACTAGAAGCATATGTATTCATTGTAAAGGCTAAAGTCGGACTGAGTGCTTTTGTACAGGCAGTAGGAATTGTGCTTCAGAAAAGACCGGCTCCTTTAGTTCACGGTACCCCTTTGGCGGACTGTGGTTTAGTTTCTCCAGGGTTGAAGGCTGCCATTACTCCCAGTAAAAGACTAAAGAAGGGCAAGAAGCGAGGAGCTGATGAAGTCCCCCAAGCTGAACTGAGAAGAGATAAAAGGGTGAGCTCTGGGACTTCTGCAACCAGCTCAGATCAAGCTTCTCTCACTACTAGAAAAGAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.03

Weight (kDa)

9.84

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 61 - 98 3.3e-07 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 329
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 2 cut(s) 279, 331
AfiI CCNNNNNNNGG 1 cut(s) 340
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 1 cut(s) 361
AluBI AGCT 6 cut(s) 50, 422, 440, 468, 489, 500
AluI AGCT 6 cut(s) 50, 422, 440, 468, 489, 500
Alw21I GWGCWC 1 cut(s) 470
AoxI GGCC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 329
AsuHPI GGTGA 1 cut(s) 475
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 361
BciT130I CCWGG 1 cut(s) 363
BfaI CTAG 2 cut(s) 227, 513
BisI GCNGC 1 cut(s) 375
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 376
Bme1390I CCNGG 1 cut(s) 363
BmiI GGNNCC 2 cut(s) 315, 331
BmrFI CCNGG 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 345
Bpu1102I GCTNAGC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 362
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 363
BseDI CCNNGG 1 cut(s) 362
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMII CTCAG 5 cut(s) 135, 151, 257, 437, 504
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 1 cut(s) 361
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 524
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 416, 487
BslI CCNNNNNNNGG 1 cut(s) 340
BsmFI GGGAC 2 cut(s) 416, 487
BsnI GGCC 1 cut(s) 524
Bsp1286I GDGCHC 1 cut(s) 470
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 1 cut(s) 493
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 1 cut(s) 341
BspANI GGCC 1 cut(s) 524
BspCNI CTCAG 5 cut(s) 136, 150, 258, 438, 503
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 315, 331
BspT107I GGYRCC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 310
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 362
BssMI GATC 1 cut(s) 493
Bst2UI CCWGG 1 cut(s) 363
Bst4CI ACNGT 2 cut(s) 329, 347
Bst6I CTCTTC 1 cut(s) 445
BstAUI TGTACA 1 cut(s) 277
BstDEI CTNAG 5 cut(s) 137, 144, 266, 446, 490
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 105
BstKTI GATC 1 cut(s) 496
BstMBI GATC 1 cut(s) 493
BstNI CCWGG 1 cut(s) 363
BstSCI CCNGG 1 cut(s) 361
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 206
BsuRI GGCC 1 cut(s) 524
BtsCI GGATG 1 cut(s) 180
BtsIMutI CAGTG 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 310
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 278, 330
CviAII CATG 2 cut(s) 35, 170
CviQI GTAC 2 cut(s) 278, 330
DdeI CTNAG 5 cut(s) 137, 144, 266, 446, 490
DpnI GATC 1 cut(s) 495
DpnII GATC 1 cut(s) 493
DraI TTTAAA 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 445
EarI CTCTTC 1 cut(s) 445
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 361
EcoRV GATATC 1 cut(s) 180
EcoT38I GRGCYC 1 cut(s) 470
FaeI CATG 2 cut(s) 38, 173
FaiI YATR 7 cut(s) 10, 12, 36, 171, 205, 235, 237
FaqI GGGAC 2 cut(s) 416, 487
FatI CATG 2 cut(s) 34, 169
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 375
FokI GGATG 1 cut(s) 187
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 375
FspBI CTAG 2 cut(s) 227, 513
GluI GCNGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 524
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 38, 173
HindIII AAGCTT 1 cut(s) 498
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 311
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 2 cut(s) 101, 325
Hpy188I TCNGA 4 cut(s) 43, 263, 303, 493
Hpy188III TCNNGA 1 cut(s) 209
Hpy8I GTNNAC 2 cut(s) 101, 325
HpyAV CCTTC 2 cut(s) 364, 397
HpyCH4III ACNGT 2 cut(s) 329, 347
HpyCH4V TGCA 2 cut(s) 62, 482
HpyF3I CTNAG 5 cut(s) 137, 144, 266, 446, 490
Hsp92II CATG 2 cut(s) 38, 173
KpnI GGTACC 1 cut(s) 333
Kzo9I GATC 1 cut(s) 493
LmnI GCTCC 2 cut(s) 319, 419
LpnPI CCDG 7 cut(s) 266, 324, 348, 375, 400, 456, 499
Lsp1109I GCAGC 1 cut(s) 361
MaeI CTAG 2 cut(s) 227, 513
MaeIII GTNAC 2 cut(s) 122, 222
MalI GATC 1 cut(s) 495
MboI GATC 1 cut(s) 493
MboII GAAGA 3 cut(s) 211, 224, 462
MhlI GDGCHC 1 cut(s) 470
MluCI AATT 2 cut(s) 183, 291
MluI ACGCGT 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 5 cut(s) 7, 37, 183, 410, 514
MseI TTAA 4 cut(s) 21, 92, 159, 186
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 363
MvaI CCWGG 1 cut(s) 363
MvnI CGCG 1 cut(s) 105
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 493
NlaIII CATG 2 cut(s) 38, 173
NlaIV GGNNCC 2 cut(s) 315, 331
NmuCI GTSAC 1 cut(s) 122
PceI AGGCCT 1 cut(s) 524
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 361
PspGI CCWGG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 315, 331
RsaI GTAC 2 cut(s) 279, 331
RsaNI GTAC 2 cut(s) 278, 330
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 4 cut(s) 21, 92, 159, 186
SatI GCNGC 1 cut(s) 375
Sau3AI GATC 1 cut(s) 493
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 470
SetI ASST 7 cut(s) 48, 52, 424, 442, 470, 491, 502
Sse9I AATT 2 cut(s) 183, 291
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 1 cut(s) 341
SspMI CTAG 2 cut(s) 227, 513
SstI GAGCTC 1 cut(s) 470
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 361
TaaI ACNGT 2 cut(s) 329, 347
TaqI TCGA 1 cut(s) 197
TasI AATT 2 cut(s) 183, 291
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 4 cut(s) 21, 92, 159, 186
Tru9I TTAA 4 cut(s) 21, 92, 159, 186
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 232, 441
TspRI CASTG 1 cut(s) 145
XspI CTAG 2 cut(s) 227, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.