Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028826.1

Orthogroup ID

OG0013656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3568

Gene Structure 3568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028826.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atgtctggtcattctgtcagcttggatcaacagactcatgacatagagaacagctctatagctgtctttgaaaagtcacatggggattcaggtttagacgttgaagatgttaaacccattcctgtgatcttggatcaagctcagaagtgtctcccctgcgtctatgctagtaagaggatggcttacttagctctggaagaagagacgaaattgcagaatgctttggcagctgagatggaatcggttgaagaaaaccgccaagtggatttcaatgaggatgaatatggtgagccctcattgtctctagaagcttctgctatatgtgacgtctttagtgatcctcaggtactccctagagttggaaatgaatatcaggttgaaattccccctctatcagctgcatcttactgttctgggcttataaaccatccaactaatgcaaaaatcactgctgaagatccctttgagtttctaatggggttacccattccagtaatgaggatatgtgaggaagttaagagtaaaaagcatgattcagaggtagcttttgatgttgcagttggtgtagccaacaaaaatggttctttaaaatctaaatgcgtcaaacagatagacagtgacaactcaaaactcagtgctgagccaatggatattaagtctgctcatgggatgatatcaagtaagtcagtgaaattgggtttgaaacaagaaatgatgagtgaaatgcatgaaaagcgtaagggaagacagtacagtctggttcctggttcttcagttgaccactggagtgacatagaaaaagatagttttcttcttgctttatatatatttgggaagaacctccttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

283

Amino Acids

31.21

Weight (kDa)

4.88

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17780 FvH4_4g17780 FvH4_4g17780 FvH4_4g17780
rosa_chinensis	RchiOBHm_Chr4g0421731
rosa_laevigata	RLG00000007654
rosa_multiflora	Rmu_co8508841.1_g000001 Rmu_sc0028826.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363980 Rroxscaffold_5G00364020
rosa_rugosa	Rorug04G0175300 Rorug04G0175400
rosa_samantha	Rh4AG234500 Rh4BG237500 Rh4BG237900 Rh4CG249500 Rh4DG233400
rosa_wichuraiana	Rw4G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	422
AasI	GACNNNNNNGTC	1 cut(s)	753
AatII	GACGTC	1 cut(s)	330
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	4 cut(s)	33, 141, 332, 452
AcsI	RAATTY	1 cut(s)	381
AcuI	CTGAAG	3 cut(s)	474, 756, 830
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	2 cut(s)	348, 752
AfiI	CCNNNNNNNGG	2 cut(s)	262, 359
AgsI	TTSAA	6 cut(s)	71, 104, 248, 271, 380, 703
AjnI	CCWGG	1 cut(s)	763
AleI	CACNNNNGTG	1 cut(s)	786
AluBI	AGCT	9 cut(s)	21, 54, 62, 140, 191, 230, 311, 398, 545
AluI	AGCT	9 cut(s)	21, 54, 62, 140, 191, 230, 311, 398, 545
Alw26I	GTCTC	3 cut(s)	155, 197, 306
AlwI	GGATC	4 cut(s)	33, 141, 332, 452
ApeKI	GCWGC	2 cut(s)	227, 398
ApoI	RAATTY	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	751
BbvI	GCAGC	2 cut(s)	239, 385
BccI	CCATC	3 cut(s)	172, 229, 435
BciT130I	CCWGG	1 cut(s)	765
BcoDI	GTCTC	3 cut(s)	155, 197, 306
BfaI	CTAG	3 cut(s)	168, 305, 354
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	228, 399
BlpI	GCTNAGC	1 cut(s)	639
BlsI	GCNGC	2 cut(s)	229, 400
Bme1390I	CCNGG	1 cut(s)	765
BmiI	GGNNCC	1 cut(s)	762
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	751
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	805
Bpu1102I	GCTNAGC	1 cut(s)	639
BsaHI	GRCGYC	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 359
Bse1I	ACTGG	2 cut(s)	491, 788
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	765
BseGI	GGATG	4 cut(s)	183, 283, 427, 675
BseLI	CCNNNNNNNGG	2 cut(s)	262, 359
BseMII	CTCAG	5 cut(s)	155, 222, 356, 630, 646
BseNI	ACTGG	2 cut(s)	491, 788
BseXI	GCAGC	2 cut(s)	239, 385
BslI	CCNNNNNNNGG	2 cut(s)	262, 359
BsmAI	GTCTC	3 cut(s)	155, 197, 306
BsmBI	CGTCTC	1 cut(s)	197
BsmI	GAATGC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	25, 126, 133, 337, 457
Bsp1720I	GCTNAGC	1 cut(s)	639
BspACI	CCGC	1 cut(s)	256
BspCNI	CTCAG	5 cut(s)	154, 223, 355, 631, 645
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	762
BspPI	GGATC	4 cut(s)	33, 141, 332, 452
BsrI	ACTGG	2 cut(s)	491, 788
BssMI	GATC	5 cut(s)	25, 126, 133, 337, 457
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	4 cut(s)	410, 617, 750, 755
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	327
BstDEI	CTNAG	6 cut(s)	141, 187, 231, 342, 632, 639
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	183, 283, 427, 675
BstKTI	GATC	5 cut(s)	28, 129, 136, 340, 460
BstMAI	GTCTC	3 cut(s)	155, 197, 306
BstMBI	GATC	5 cut(s)	25, 126, 133, 337, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 227, 733
BstNI	CCWGG	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	763
BstSFI	CTRYAG	1 cut(s)	57
BstV1I	GCAGC	2 cut(s)	239, 385
BstV2I	GAAGAC	1 cut(s)	751
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
Bsu36I	CCTNAGG	1 cut(s)	342
BtsCI	GGATG	4 cut(s)	183, 283, 427, 675
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	5 cut(s)	447, 622, 640, 693, 781
CciI	TCATGA	1 cut(s)	37
CseI	GACGC	2 cut(s)	148, 589
Csp6I	GTAC	2 cut(s)	347, 751
CviAII	CATG	5 cut(s)	38, 80, 530, 665, 728
CviQI	GTAC	2 cut(s)	347, 751
DdeI	CTNAG	6 cut(s)	141, 187, 231, 342, 632, 639
DpnI	GATC	5 cut(s)	27, 128, 135, 339, 459
DpnII	GATC	5 cut(s)	25, 126, 133, 337, 457
DraI	TTTAAA	1 cut(s)	588
DrdI	GACNNNNNNGTC	1 cut(s)	753
DseDI	GACNNNNNNGTC	1 cut(s)	753
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	675
Eco57I	CTGAAG	3 cut(s)	474, 756, 830
Eco81I	CCTNAGG	1 cut(s)	342
Eco91I	GGTNACC	1 cut(s)	480
EcoO65I	GGTNACC	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	763
EcoRV	GATATC	1 cut(s)	675
EcoT22I	ATGCAT	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	294
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	5 cut(s)	41, 83, 533, 668, 731
FatI	CATG	5 cut(s)	37, 79, 529, 664, 727
Fnu4HI	GCNGC	2 cut(s)	228, 399
FokI	GGATG	4 cut(s)	190, 290, 414, 682
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	228, 399
FspBI	CTAG	3 cut(s)	168, 305, 354
GluI	GCNGC	2 cut(s)	228, 399
GsuI	CTGGAG	1 cut(s)	805
HgaI	GACGC	2 cut(s)	148, 589
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	5 cut(s)	41, 83, 533, 668, 731
HincII	GTYRAC	1 cut(s)	778
HindII	GTYRAC	1 cut(s)	778
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	4 cut(s)	34, 86, 239, 533
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	778
Hpy188I	TCNGA	2 cut(s)	144, 538
Hpy188III	TCNNGA	3 cut(s)	38, 194, 305
Hpy8I	GTNNAC	1 cut(s)	778
HpyCH4III	ACNGT	4 cut(s)	410, 617, 750, 755
HpyCH4IV	ACGT	2 cut(s)	99, 327
HpyCH4V	TGCA	5 cut(s)	214, 401, 440, 557, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 227, 733
HpyF3I	CTNAG	6 cut(s)	141, 187, 231, 342, 632, 639
HpySE526I	ACGT	2 cut(s)	99, 327
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	5 cut(s)	41, 83, 533, 668, 731
Kzo9I	GATC	5 cut(s)	25, 126, 133, 337, 457
Lsp1109I	GCAGC	2 cut(s)	239, 385
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	3 cut(s)	168, 305, 354
MaeII	ACGT	2 cut(s)	99, 327
MaeIII	GTNAC	5 cut(s)	75, 323, 480, 617, 788
MalI	GATC	5 cut(s)	27, 128, 135, 339, 459
MboI	GATC	5 cut(s)	25, 126, 133, 337, 457
MboII	GAAGA	9 cut(s)	116, 209, 212, 260, 467, 756, 762, 803, 847
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	3 cut(s)	209, 381, 692
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	2 cut(s)	340, 455
MnlI	CCTC	8 cut(s)	168, 268, 304, 351, 399, 492, 502, 532
Mph1103I	ATGCAT	1 cut(s)	729
MseI	TTAA	4 cut(s)	111, 516, 587, 654
MslI	CAYNNNNRTG	2 cut(s)	122, 786
MspA1I	CMGCKG	2 cut(s)	230, 398
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	3 cut(s)	188, 227, 733
NdeII	GATC	5 cut(s)	25, 126, 133, 337, 457
NlaIII	CATG	5 cut(s)	41, 83, 533, 668, 731
NlaIV	GGNNCC	1 cut(s)	762
NmuCI	GTSAC	4 cut(s)	75, 323, 617, 788
NsiI	ATGCAT	1 cut(s)	729
OliI	CACNNNNGTG	1 cut(s)	786
PagI	TCATGA	1 cut(s)	37
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	86, 239, 533
PkrI	GCNGC	2 cut(s)	229, 400
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PsiI	TTATAA	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	763
PspEI	GGTNACC	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	1 cut(s)	762
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	2 cut(s)	230, 398
RsaI	GTAC	2 cut(s)	348, 752
RsaNI	GTAC	2 cut(s)	347, 751
RseI	CAYNNNNRTG	2 cut(s)	122, 786
SaqAI	TTAA	4 cut(s)	111, 516, 587, 654
SatI	GCNGC	2 cut(s)	228, 399
Sau3AI	GATC	5 cut(s)	25, 126, 133, 337, 457
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	410
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	122, 786
Sse9I	AATT	3 cut(s)	209, 381, 692
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	3 cut(s)	168, 305, 354
StyD4I	CCNGG	1 cut(s)	763
TaaI	ACNGT	4 cut(s)	410, 617, 750, 755
TaiI	ACGT	2 cut(s)	102, 330
TasI	AATT	3 cut(s)	209, 381, 692
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	86, 239, 533
Tru1I	TTAA	4 cut(s)	111, 516, 587, 654
Tru9I	TTAA	4 cut(s)	111, 516, 587, 654
TscAI	CASTG	5 cut(s)	454, 622, 640, 693, 788
TseFI	GTSAC	4 cut(s)	75, 323, 617, 788
TseI	GCWGC	2 cut(s)	227, 398
Tsp45I	GTSAC	4 cut(s)	75, 323, 617, 788
TspDTI	ATGAA	3 cut(s)	294, 381, 744
TspRI	CASTG	5 cut(s)	454, 622, 640, 693, 788
XapI	RAATTY	1 cut(s)	381
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	3 cut(s)	168, 305, 354
ZraI	GACGTC	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.