RLG00000007654

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013656
Physical Location & Seq
Reverse (-)
19493964 .. 19497012
3049 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007654

Sequence Viewer

Length: 1740 bp
ATGCCTGATTTTTACCGGTTTTTCCCTCTCATTTGGCAGATGGAATCGGTTGAAGAAAACCGCCAAGTAGATTTCAATGAGGATGAATATGGTGAGCCCTCATTGTCTCTAGAAGCTTCTGCTATATGTGACGTCTTTAGTGATCCTCAGGTACTTCCTAGAGTTGGAAATGAATATCAGGTTGAAATTCCCCCTCTATCAGCTGCATCTTTCTGTTCTGGGCTTATAAACCATCCAACTAATGTAAAAATCACTGCTGATGATCCCTTTGAGTTTCTAATGGGGTTACCCATTCCAGTAATGAGGATATATGAGGAAGTTAAGAGTAAAGAGCATGATTCAGAGGTAGCTTTTGATGTTGCAGTTGGTGTAGCCAACAAAATTGGTTCTTTAAGATCTACACGCGTCAAACAGATAGAAAGTGACAACTCAAAACTCAGTGCTGAGCCAATGAATATTAAGTCTGCTCATGGGATGATATCAAGGAAGTCGGTGAAGTTGGGTTTCAAACAAGAAATGATTAGTGAAATGCATGAAAAGCGTAAGGGAAGACAGTGCAGTCTGGTTCCTGGTTCCTCAGTTGACCACTGGAGTGACATAGAAAAAGATAGTTTTCTTCTTGCTTTATATATATTTGGGAAGAACCTCCTTCAGGTGAAGAAATTTATTGGGAGTAAACAGATGGGCGATATATTGTCATTCTACTATGGAAAATTTTATAGGTCTTGCAGCTACATAAGATGGGCAGAAAGTAAAAGAAAGAAGAGCAAAAGAGGTAAACTAGGAGAAAATTTATTTACAGGATTAAGGCAAGAAGTGTTGTTATCTCGTTTGCTTCCCCACTTGTCAGAAGAAGACCAAACTACTTTACTTGAGGTATCGAAGACATATCGAGAAGAAAAAATGTTATTAGAAGCATATGTATTCATTGTAAAGGCTAAAGTCGGACTGAGTGCTTTTGTACAGGCAGTAGGAATCGGTAAAGGGAAGCAAGATCTAACAGTGCTTCGGAAAAGACTGGCTCCTCTAGCTCACGGTACCCCTTTGGCGAACTGTGGTTTAGTTTCTCCAGAGTTGAAGGCTGCCATTACTCCCAGTAAAAGATCAAAGAAGGGCAAGAAGCGAGGAGCTGATGAAGTCCCCGAAGCTGAACTGAGAAGAGACAAAAGGGTGAGCTCTGGGCCTTCTGCAACCAGCTCAGATCAAGCTTCTCTGGTCCCCTTTGTCAATTCTATAATGAAGTCTGTTAGAGAGCCAGCCGAGTGTATGAACCCTATTGAGCATCTCCAGAGGTCCTATGCCCAGGCCGCCCAGGTCTTGTTCGATCAATTTCATGCCTATGGAGATGTCATTGGGGAGTTGCAGAAGGAGAGCATTACAAGAGCCGAGCTGGAGAAGGAACGGGCCAAAGTGAAAGATCTGGAGACACAGCTTGGTTTTCTCAAAAGAGACTTGGAGAAGACAAAGACTAAGGTGGATGAGCTGAATGCTGAGCTCATCTGTGGCTCAGGGGGTGCAGAGGAGAGGTATAAGGTTGCCGTAGAGCACTTCAAGGAGTCCAAGGAGTTTACCCAGATGAAAAATGACCTGATTAACCAGGGGATCATTCGGTGTATGAATATCATGAATGCCTACTTCCCCAACCTGGAATGGAAATGCTTGGATGGTCCACCTCCTGATGATAAAGATTTGGAGGCGAAAGAGGATGATCGAACACGAAGGAAGCAATCAGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

580

Amino Acids

65.31

Weight (kDa)

8.16

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7952 PF25826 197 - 327 1.6e-54 Domain of unknown function (DUF7952)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AasI GACNNNNNNGTC 1 cut(s) 558
AatII GACGTC 1 cut(s) 135
Acc65I GGTACC 1 cut(s) 1037
AccB1I GGYRCC 1 cut(s) 1037
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 61, 1308
AclWI GGATC 3 cut(s) 137, 257, 1610
AcsI RAATTY 4 cut(s) 186, 662, 713, 790
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 3 cut(s) 153, 963, 1039
AfiI CCNNNNNNNGG 3 cut(s) 164, 652, 1645
AflIII ACRYGT 1 cut(s) 403
AgeI ACCGGT 1 cut(s) 15
AgsI TTSAA 6 cut(s) 53, 76, 185, 508, 1078, 1552
AjnI CCWGG 5 cut(s) 568, 1302, 1311, 1596, 1644
AleI CACNNNNGTG 1 cut(s) 591
Alw21I GWGCWC 3 cut(s) 1178, 1497, 1548
Alw26I GTCTC 4 cut(s) 111, 1155, 1418, 1443
AlwI GGATC 3 cut(s) 137, 257, 1610
AoxI GGCC 3 cut(s) 1181, 1305, 1404
ApeKI GCWGC 3 cut(s) 203, 729, 1082
ApoI RAATTY 4 cut(s) 186, 662, 713, 790
AsiGI ACCGGT 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 1037
AspS9I GGNCC 5 cut(s) 1181, 1216, 1293, 1404, 1667
AsuHPI GGTGA 4 cut(s) 104, 505, 667, 1183
AvaII GGWCC 3 cut(s) 1216, 1293, 1667
AxyI CCTNAGG 1 cut(s) 147
BanI GGYRCC 1 cut(s) 1037
BanII GRGCYC 3 cut(s) 99, 1178, 1497
BbsI GAAGAC 4 cut(s) 556, 861, 890, 1466
Bbv12I GWGCWC 3 cut(s) 1178, 1497, 1548
BbvI GCAGC 3 cut(s) 190, 741, 1069
BccI CCATC 5 cut(s) 34, 240, 676, 735, 1658
BceAI ACGGC 1 cut(s) 1523
BciT130I CCWGG 5 cut(s) 570, 1304, 1313, 1598, 1646
BcoDI GTCTC 4 cut(s) 111, 1155, 1418, 1443
BfaI CTAG 4 cut(s) 110, 159, 782, 1028
BglII AGATCT 3 cut(s) 395, 994, 1417
BisI GCNGC 4 cut(s) 204, 730, 1083, 1308
BlpI GCTNAGC 2 cut(s) 444, 1491
BlsI GCNGC 4 cut(s) 205, 731, 1084, 1309
Bme1390I CCNGG 5 cut(s) 570, 1304, 1313, 1598, 1646
Bme18I GGWCC 3 cut(s) 1216, 1293, 1667
BmgT120I GGNCC 5 cut(s) 1181, 1216, 1293, 1404, 1667
BmiI GGNNCC 5 cut(s) 567, 574, 1023, 1039, 1218
BmrFI CCNGG 5 cut(s) 570, 1304, 1313, 1598, 1646
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 2 cut(s) 215, 1291
BmuI ACTGGG 1 cut(s) 1089
BpiI GAAGAC 4 cut(s) 556, 861, 890, 1466
BpmI CTGGAG 5 cut(s) 610, 1053, 1271, 1412, 1442
Bpu10I CCTNAGC 1 cut(s) 1507
Bpu1102I GCTNAGC 2 cut(s) 444, 1491
BpuEI CTTGAG 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 4 cut(s) 1302, 1311, 1560, 1597
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 3 cut(s) 164, 652, 1645
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 4 cut(s) 296, 593, 1023, 1095
Bse21I CCTNAGG 1 cut(s) 147
BseBI CCWGG 5 cut(s) 570, 1304, 1313, 1598, 1646
BseDI CCNNGG 4 cut(s) 1302, 1311, 1560, 1597
BseGI GGATG 6 cut(s) 88, 232, 480, 1483, 1669, 1711
BseLI CCNNNNNNNGG 3 cut(s) 164, 652, 1645
BseMII CTCAG 9 cut(s) 161, 435, 451, 591, 941, 1145, 1212, 1482, 1521
BseNI ACTGG 4 cut(s) 296, 593, 1023, 1095
BseRI GAGGAG 3 cut(s) 1014, 1140, 1535
BseXI GCAGC 3 cut(s) 190, 741, 1069
BsgI GTGCAG 2 cut(s) 577, 1536
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 3 cut(s) 1183, 1307, 1406
BshNI GGYRCC 1 cut(s) 1037
BshTI ACCGGT 1 cut(s) 15
BsiHKAI GWGCWC 3 cut(s) 1178, 1497, 1548
BsiSI CCGG 1 cut(s) 16
BslFI GGGAC 2 cut(s) 1124, 1202
BslI CCNNNNNNNGG 3 cut(s) 164, 652, 1645
BsmAI GTCTC 4 cut(s) 111, 1155, 1418, 1443
BsmFI GGGAC 2 cut(s) 1124, 1202
BsmI GAATGC 2 cut(s) 1492, 1633
BsnI GGCC 3 cut(s) 1183, 1307, 1406
Bsp1286I GDGCHC 4 cut(s) 99, 1178, 1497, 1548
Bsp1407I TGTACA 1 cut(s) 961
Bsp1720I GCTNAGC 2 cut(s) 444, 1491
BspACI CCGC 2 cut(s) 61, 1308
BspANI GGCC 3 cut(s) 1183, 1307, 1406
BspCNI CTCAG 9 cut(s) 160, 436, 450, 590, 942, 1146, 1211, 1483, 1520
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 1623
BspLI GGNNCC 5 cut(s) 567, 574, 1023, 1039, 1218
BspPI GGATC 3 cut(s) 137, 257, 1610
BspQI GCTCTTC 1 cut(s) 758
BspT107I GGYRCC 1 cut(s) 1037
BsrFI RCCGGY 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 961
BsrI ACTGG 4 cut(s) 296, 593, 1023, 1095
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 4 cut(s) 1302, 1311, 1560, 1597
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 1560
Bst2UI CCWGG 5 cut(s) 570, 1304, 1313, 1598, 1646
Bst4CI ACNGT 4 cut(s) 555, 1003, 1037, 1055
Bst6I CTCTTC 2 cut(s) 758, 1153
BstACI GRCGYC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 961
BstC8I GCNNGC 1 cut(s) 1257
BstEII GGTNACC 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 650
BstF5I GGATG 6 cut(s) 88, 232, 480, 1483, 1669, 1711
BstFNI CGCG 1 cut(s) 405
BstMAI GTCTC 4 cut(s) 111, 1155, 1418, 1443
BstMWI GCNNNNNNNGC 3 cut(s) 538, 1028, 1307
BstNI CCWGG 5 cut(s) 570, 1304, 1313, 1598, 1646
BstPI GGTNACC 1 cut(s) 285
BstSCI CCNGG 5 cut(s) 568, 1302, 1311, 1596, 1644
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 190, 741, 1069
BstV2I GAAGAC 4 cut(s) 556, 861, 890, 1466
BstX2I RGATCY 3 cut(s) 395, 994, 1417
BstYI RGATCY 3 cut(s) 395, 994, 1417
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 3 cut(s) 1183, 1307, 1406
BtsCI GGATG 6 cut(s) 88, 232, 480, 1483, 1669, 1711
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 5 cut(s) 252, 445, 560, 586, 1008
Cac8I GCNNGC 1 cut(s) 1257
CciI TCATGA 1 cut(s) 1623
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 5 cut(s) 1181, 1216, 1293, 1404, 1667
CseI GACGC 1 cut(s) 394
Csp6I GTAC 3 cut(s) 152, 962, 1038
CspAI ACCGGT 1 cut(s) 15
CviAII CATG 5 cut(s) 335, 470, 533, 1334, 1624
CviQI GTAC 3 cut(s) 152, 962, 1038
DrdI GACNNNNNNGTC 1 cut(s) 558
DseDI GACNNNNNNGTC 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 758, 1153
EarI CTCTTC 2 cut(s) 758, 1153
Ecl136II GAGCTC 2 cut(s) 1176, 1495
Eco130I CCWWGG 1 cut(s) 1560
Eco24I GRGCYC 3 cut(s) 99, 1178, 1497
Eco32I GATATC 1 cut(s) 480
Eco47I GGWCC 3 cut(s) 1216, 1293, 1667
Eco53kI GAGCTC 2 cut(s) 1176, 1495
Eco57I CTGAAG 1 cut(s) 635
Eco81I CCTNAGG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 285
EcoICRI GAGCTC 2 cut(s) 1176, 1495
EcoNI CCTNNNNNAGG 1 cut(s) 650
EcoO109I RGGNCCY 1 cut(s) 1293
EcoO65I GGTNACC 1 cut(s) 285
EcoRII CCWGG 5 cut(s) 568, 1302, 1311, 1596, 1644
EcoRV GATATC 1 cut(s) 480
EcoT14I CCWWGG 1 cut(s) 1560
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 3 cut(s) 99, 1178, 1497
ErhI CCWWGG 1 cut(s) 1560
FaeI CATG 5 cut(s) 338, 473, 536, 1337, 1627
FaqI GGGAC 2 cut(s) 1124, 1202
FatI CATG 5 cut(s) 334, 469, 532, 1333, 1623
FauNDI CATATG 1 cut(s) 919
Fnu4HI GCNGC 4 cut(s) 204, 730, 1083, 1308
FokI GGATG 6 cut(s) 95, 219, 487, 1490, 1676, 1718
FriOI GRGCYC 3 cut(s) 99, 1178, 1497
Fsp4HI GCNGC 4 cut(s) 204, 730, 1083, 1308
FspBI CTAG 4 cut(s) 110, 159, 782, 1028
GluI GCNGC 4 cut(s) 204, 730, 1083, 1308
GsuI CTGGAG 5 cut(s) 610, 1053, 1271, 1412, 1442
HaeIII GGCC 3 cut(s) 1183, 1307, 1406
HapII CCGG 1 cut(s) 16
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 5 cut(s) 338, 473, 536, 1337, 1627
HincII GTYRAC 1 cut(s) 583
HindII GTYRAC 1 cut(s) 583
HindIII AAGCTT 2 cut(s) 114, 1206
HinfI GANTC 4 cut(s) 44, 338, 975, 1556
HpaII CCGG 1 cut(s) 16
HphI GGTGA 4 cut(s) 104, 505, 667, 1183
Hpy166II GTNNAC 5 cut(s) 583, 677, 779, 1569, 1670
Hpy188I TCNGA 5 cut(s) 343, 850, 947, 1011, 1201
Hpy188III TCNNGA 7 cut(s) 110, 893, 1070, 1288, 1421, 1624, 1676
Hpy8I GTNNAC 5 cut(s) 583, 677, 779, 1569, 1670
HpyAV CCTTC 7 cut(s) 659, 1072, 1105, 1194, 1360, 1390, 1713
HpyCH4III ACNGT 4 cut(s) 555, 1003, 1037, 1055
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 8 cut(s) 206, 362, 532, 558, 729, 1190, 1363, 1517
HpyF10VI GCNNNNNNNGC 3 cut(s) 538, 1028, 1307
HpySE526I ACGT 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 5 cut(s) 338, 473, 536, 1337, 1627
KpnI GGTACC 1 cut(s) 1041
LguI GCTCTTC 1 cut(s) 758
LmnI GCTCC 2 cut(s) 1027, 1127
Lsp1109I GCAGC 3 cut(s) 190, 741, 1069
LweI GCATC 2 cut(s) 215, 1291
MaeI CTAG 4 cut(s) 110, 159, 782, 1028
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 4 cut(s) 128, 285, 422, 593
MflI RGATCY 3 cut(s) 395, 994, 1417
MhlI GDGCHC 4 cut(s) 99, 1178, 1497, 1548
MluCI AATT 7 cut(s) 186, 381, 662, 713, 790, 1228, 1328
MluI ACGCGT 1 cut(s) 403
MlyI GAGTC 1 cut(s) 1565
MmeI TCCRAC 3 cut(s) 145, 260, 925
Mph1103I ATGCAT 1 cut(s) 534
MseI TTAA 5 cut(s) 321, 392, 459, 806, 1593
MslI CAYNNNNRTG 2 cut(s) 591, 1338
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 16
MspR9I CCNGG 5 cut(s) 570, 1304, 1313, 1598, 1646
Mva1269I GAATGC 2 cut(s) 1492, 1633
MvaI CCWGG 5 cut(s) 570, 1304, 1313, 1598, 1646
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 538, 1028, 1307
NdeI CATATG 1 cut(s) 919
NlaIII CATG 5 cut(s) 338, 473, 536, 1337, 1627
NlaIV GGNNCC 5 cut(s) 567, 574, 1023, 1039, 1218
NmeAIII GCCGAG 2 cut(s) 1285, 1411
NmuCI GTSAC 3 cut(s) 128, 422, 593
NsiI ATGCAT 1 cut(s) 534
OliI CACNNNNGTG 1 cut(s) 591
PagI TCATGA 1 cut(s) 1623
PciSI GCTCTTC 1 cut(s) 758
PctI GAATGC 2 cut(s) 1492, 1633
PfeI GAWTC 3 cut(s) 44, 338, 975
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 4 cut(s) 205, 731, 1084, 1309
PleI GAGTC 1 cut(s) 1564
PpsI GAGTC 1 cut(s) 1564
PpuMI RGGWCCY 1 cut(s) 1293
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 2 cut(s) 1178, 1497
Psp5II RGGWCCY 1 cut(s) 1293
Psp6I CCWGG 5 cut(s) 568, 1302, 1311, 1596, 1644
PspEI GGTNACC 1 cut(s) 285
PspGI CCWGG 5 cut(s) 568, 1302, 1311, 1596, 1644
PspN4I GGNNCC 5 cut(s) 567, 574, 1023, 1039, 1218
PspPI GGNCC 5 cut(s) 1181, 1216, 1293, 1404, 1667
PspPPI RGGWCCY 1 cut(s) 1293
PsuI RGATCY 3 cut(s) 395, 994, 1417
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 3 cut(s) 153, 963, 1039
RsaNI GTAC 3 cut(s) 152, 962, 1038
RseI CAYNNNNRTG 2 cut(s) 591, 1338
SacI GAGCTC 2 cut(s) 1178, 1497
SapI GCTCTTC 1 cut(s) 758
SaqAI TTAA 5 cut(s) 321, 392, 459, 806, 1593
SatI GCNGC 4 cut(s) 204, 730, 1083, 1308
Sau96I GGNCC 5 cut(s) 1181, 1216, 1293, 1404, 1667
SchI GAGTC 1 cut(s) 1565
ScrFI CCNGG 5 cut(s) 570, 1304, 1313, 1598, 1646
SduI GDGCHC 4 cut(s) 99, 1178, 1497, 1548
SfaNI GCATC 2 cut(s) 215, 1291
SinI GGWCC 3 cut(s) 1216, 1293, 1667
SmiMI CAYNNNNRTG 2 cut(s) 591, 1338
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse9I AATT 7 cut(s) 186, 381, 662, 713, 790, 1228, 1328
SsiI CCGC 2 cut(s) 61, 1308
SspI AATATT 1 cut(s) 457
SspMI CTAG 4 cut(s) 110, 159, 782, 1028
SstI GAGCTC 2 cut(s) 1178, 1497
StyD4I CCNGG 5 cut(s) 568, 1302, 1311, 1596, 1644
StyI CCWWGG 1 cut(s) 1560
TaaI ACNGT 4 cut(s) 555, 1003, 1037, 1055
TaiI ACGT 1 cut(s) 135
TaqI TCGA 4 cut(s) 881, 892, 1323, 1711
TasI AATT 7 cut(s) 186, 381, 662, 713, 790, 1228, 1328
TatI WGTACW 1 cut(s) 961
TauI GCSGC 1 cut(s) 1310
TfiI GAWTC 3 cut(s) 44, 338, 975
Tru1I TTAA 5 cut(s) 321, 392, 459, 806, 1593
Tru9I TTAA 5 cut(s) 321, 392, 459, 806, 1593
TscAI CASTG 5 cut(s) 259, 445, 560, 593, 1008
TseFI GTSAC 3 cut(s) 128, 422, 593
TseI GCWGC 3 cut(s) 203, 729, 1082
Tsp45I GTSAC 3 cut(s) 128, 422, 593
TspRI CASTG 5 cut(s) 259, 445, 560, 593, 1008
VpaK11BI GGWCC 3 cut(s) 1216, 1293, 1667
XagI CCTNNNNNAGG 1 cut(s) 650
XapI RAATTY 4 cut(s) 186, 662, 713, 790
XbaI TCTAGA 1 cut(s) 109
XspI CTAG 4 cut(s) 110, 159, 782, 1028
ZraI GACGTC 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.