Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013656

Physical Location & Seq

Genomic Coordinates Forward (+)

40328093 .. 40331090

Gene Structure 2998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAATCGGTTGAAGAAAACCACCAAGTAGATTTCAATGAGGATGAATATGGTGAGCCCTCATTTTCTCTAGAAGCTTCTGCTATATGTGATGTCTTTAGTGATCCTCAGGTACTTCCTAGAGTTGGAAATGAATATCAGGTTGAAATTCCCCCTCTATCAGCTGCATCTTACTGTTCTGGGCTTATAAACCATCCAACTAATGCAAAAATCACTGCTGATGATCCCTTTGAGGTTCTAATGGGGTTACCCATTCCAGTAATGAGGATATATGAGGAAGTTAAGAGTAAAGAGCATGATTCAGAGGTAGCTTTTGATGTTGCAGTTAATGTAGCCAACAAAAATGGTTCTTTAAAATCTAAACGCGTCAAACAGATAGAAAGTGACAACTCAAAACTCAGTGCTGAGCCAATGGATATTAAGTCTGCACATGGGATGATATCAAGTAAGTCGGTGATGTTGGGTTTGAAACAAGAAATGATGAGTGAAATGCATGAAAAGCGTAAGGGAAGACAGTACAGTCTGGTTCCTGGTTCCTCAGTTGACCACTGGAGTGACATAGAAAAAGATAGTTTTCTTCTTGGTTTATATATATTTGGGAAGAACCTCCTTCAGGTATCGAAGACATATCGAGAAGAAAAAATGTCACTAGAAGCATATGTATTCATTGTAAAGGCTAAAGTCGGACTGAGTGCTTTTGTACAGGCAGTAGGAATCGGTAAAGGGAAGCAAGATCTAACAGTGCTTCGGAAAAGACCGGCTCCTTTAGCTCACGGTACCCCTTTGGCAAACTGTGGTTTAGTTTCTCCAGAGTTGAAGGCTGCCATTACTCCCAGTAAAAGATCAAAGAAGGGCAAGAAGCGAGGAGCTGATGAAGTCCCCCAAGCTCAACTGAGAAGAGAAAAAAGGGTGAGCTCTGGGCCTTCTGCAACCAGCTCAGATCAAGCTTCTCTGGTCCCCTTTGTCAATTCTATAATGAAGTCTGTTAGAGAGCCAGCCAAGGGTATGAACCCTATTGAGCATCTCCAGAGGTCCTATGCCCAGGCCGTTCAGGTCTTGTTCGACCAATTTCATGCCTATGGAGATGTCATTGGGGAGTTGCAGAAGGAGAGCATTACAAGAGCCGAGCTGGAGAAGGAACGGGCCAAAGTGAAAGATCTGGAGACACAGCTTGGTTTTCTCAAAAGAGACTTGGAGAAGACAAAGACTAAGGTGGATGAGCTGAATGCTGAGCTCATCTGTGGCTCAGGGGGTGCAGAGGAGAGGTATAAGGCTGCCGTAGAGCACTTCAAGGAGTCCGAGGAGTTTACCCAGATGAAAAATGACCTGATTAACCATGGGATCATTCGGTGTATGAATATCATGAATGCCTACTTCCCCAACCTGGAATGGAAATGCTTGGATGGTCCACTTCCTGATGATAAAGATTTGGAGGCGAAAGACGATGATCGAACACGAAGGAAGCAATCAGCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

492

Amino Acids

54.89

Weight (kDa)

6.32

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7952	PF25826	184 - 208	7.5e-07	Domain of unknown function (DUF7952)
DUF7952	PF25826	203 - 240	2.9e-08	Domain of unknown function (DUF7952)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g17780 FvH4_4g17780 FvH4_4g17780 FvH4_4g17780
rosa_chinensis	RchiOBHm_Chr4g0421731
rosa_laevigata	RLG00000007654
rosa_multiflora	Rmu_co8508841.1_g000001 Rmu_sc0028826.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363980 Rroxscaffold_5G00364020
rosa_rugosa	Rorug04G0175300 Rorug04G0175400
rosa_samantha	Rh4AG234500 Rh4BG237500 Rh4BG237900 Rh4CG249500 Rh4DG233400
rosa_wichuraiana	Rw4G019960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AasI	GACNNNNNNGTC	1 cut(s)	519
Acc65I	GGTACC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	776
AccII	CGCG	1 cut(s)	366
AclWI	GGATC	3 cut(s)	98, 218, 1349
AcsI	RAATTY	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	596
AfaI	GTAC	4 cut(s)	114, 518, 702, 778
AfiI	CCNNNNNNNGG	4 cut(s)	125, 613, 1001, 1384
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	6 cut(s)	14, 37, 146, 469, 817, 1291
AjnI	CCWGG	3 cut(s)	529, 1041, 1383
AleI	CACNNNNGTG	1 cut(s)	552
Alw21I	GWGCWC	3 cut(s)	917, 1236, 1287
Alw26I	GTCTC	2 cut(s)	1157, 1182
AlwI	GGATC	3 cut(s)	98, 218, 1349
AoxI	GGCC	3 cut(s)	920, 1044, 1143
ApeKI	GCWGC	3 cut(s)	164, 821, 1274
ApoI	RAATTY	1 cut(s)	147
Asp718I	GGTACC	1 cut(s)	776
AspS9I	GGNCC	5 cut(s)	920, 955, 1032, 1143, 1406
AsuHPI	GGTGA	3 cut(s)	65, 466, 922
AvaII	GGWCC	3 cut(s)	955, 1032, 1406
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	776
BanII	GRGCYC	3 cut(s)	60, 917, 1236
BbsI	GAAGAC	3 cut(s)	517, 629, 1205
Bbv12I	GWGCWC	3 cut(s)	917, 1236, 1287
BbvI	GCAGC	3 cut(s)	151, 808, 1261
BccI	CCATC	2 cut(s)	201, 1397
BceAI	ACGGC	2 cut(s)	1031, 1262
BciT130I	CCWGG	3 cut(s)	531, 1043, 1385
BcoDI	GTCTC	2 cut(s)	1157, 1182
BfaI	CTAG	3 cut(s)	71, 120, 650
BglII	AGATCT	2 cut(s)	733, 1156
BisI	GCNGC	3 cut(s)	165, 822, 1275
BlpI	GCTNAGC	2 cut(s)	405, 1230
BlsI	GCNGC	3 cut(s)	166, 823, 1276
Bme1390I	CCNGG	3 cut(s)	531, 1043, 1385
Bme18I	GGWCC	3 cut(s)	955, 1032, 1406
BmgT120I	GGNCC	5 cut(s)	920, 955, 1032, 1143, 1406
BmiI	GGNNCC	5 cut(s)	528, 535, 762, 778, 957
BmrFI	CCNGG	3 cut(s)	531, 1043, 1385
BmrI	ACTGGG	1 cut(s)	828
BmsI	GCATC	2 cut(s)	176, 1030
BmuI	ACTGGG	1 cut(s)	828
BpiI	GAAGAC	3 cut(s)	517, 629, 1205
BpmI	CTGGAG	5 cut(s)	571, 792, 1010, 1151, 1181
Bpu10I	CCTNAGC	1 cut(s)	1246
Bpu1102I	GCTNAGC	2 cut(s)	405, 1230
BsaJI	CCNNGG	4 cut(s)	999, 1041, 1299, 1336
Bsc4I	CCNNNNNNNGG	4 cut(s)	125, 613, 1001, 1384
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	3 cut(s)	257, 554, 834
Bse21I	CCTNAGG	1 cut(s)	108
BseBI	CCWGG	3 cut(s)	531, 1043, 1385
BseDI	CCNNGG	4 cut(s)	999, 1041, 1299, 1336
BseGI	GGATG	5 cut(s)	49, 193, 441, 1222, 1408
BseLI	CCNNNNNNNGG	4 cut(s)	125, 613, 1001, 1384
BseMII	CTCAG	9 cut(s)	122, 396, 412, 552, 680, 884, 951, 1221, 1260
BseNI	ACTGG	3 cut(s)	257, 554, 834
BseRI	GAGGAG	3 cut(s)	879, 1274, 1316
BseXI	GCAGC	3 cut(s)	151, 808, 1261
BsgI	GTGCAG	2 cut(s)	411, 1275
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	3 cut(s)	922, 1046, 1145
BshNI	GGYRCC	1 cut(s)	776
BsiHKAI	GWGCWC	3 cut(s)	917, 1236, 1287
BsiSI	CCGG	1 cut(s)	758
BslFI	GGGAC	2 cut(s)	863, 941
BslI	CCNNNNNNNGG	4 cut(s)	125, 613, 1001, 1384
BsmAI	GTCTC	2 cut(s)	1157, 1182
BsmFI	GGGAC	2 cut(s)	863, 941
BsmI	GAATGC	2 cut(s)	1231, 1372
BsnI	GGCC	3 cut(s)	922, 1046, 1145
Bsp1286I	GDGCHC	4 cut(s)	60, 917, 1236, 1287
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
Bsp1720I	GCTNAGC	2 cut(s)	405, 1230
Bsp19I	CCATGG	1 cut(s)	1336
BspANI	GGCC	3 cut(s)	922, 1046, 1145
BspCNI	CTCAG	9 cut(s)	121, 397, 411, 551, 681, 885, 950, 1222, 1259
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	1362
BspLI	GGNNCC	5 cut(s)	528, 535, 762, 778, 957
BspPI	GGATC	3 cut(s)	98, 218, 1349
BspT107I	GGYRCC	1 cut(s)	776
BsrFI	RCCGGY	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	700
BsrI	ACTGG	3 cut(s)	257, 554, 834
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	4 cut(s)	999, 1041, 1299, 1336
BssMI	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
BssT1I	CCWWGG	2 cut(s)	999, 1336
Bst2UI	CCWGG	3 cut(s)	531, 1043, 1385
Bst4CI	ACNGT	6 cut(s)	176, 516, 521, 742, 776, 794
Bst6I	CTCTTC	1 cut(s)	892
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	1 cut(s)	996
BstDSI	CCRYGG	1 cut(s)	1336
BstEII	GGTNACC	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	611
BstF5I	GGATG	5 cut(s)	49, 193, 441, 1222, 1408
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	8 cut(s)	106, 226, 736, 845, 943, 1159, 1344, 1450
BstMAI	GTCTC	2 cut(s)	1157, 1182
BstMBI	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
BstMWI	GCNNNNNNNGC	2 cut(s)	499, 767
BstNI	CCWGG	3 cut(s)	531, 1043, 1385
BstPI	GGTNACC	1 cut(s)	246
BstSCI	CCNGG	3 cut(s)	529, 1041, 1383
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	3 cut(s)	151, 808, 1261
BstV2I	GAAGAC	3 cut(s)	517, 629, 1205
BstX2I	RGATCY	2 cut(s)	733, 1156
BstYI	RGATCY	2 cut(s)	733, 1156
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	3 cut(s)	922, 1046, 1145
BtgI	CCRYGG	1 cut(s)	1336
BtsCI	GGATG	5 cut(s)	49, 193, 441, 1222, 1408
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	4 cut(s)	213, 406, 547, 747
Cac8I	GCNNGC	1 cut(s)	996
CciI	TCATGA	1 cut(s)	1362
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	5 cut(s)	920, 955, 1032, 1143, 1406
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	113, 517, 701, 777
CviAII	CATG	6 cut(s)	296, 431, 494, 1073, 1337, 1363
CviQI	GTAC	4 cut(s)	113, 517, 701, 777
DpnI	GATC	8 cut(s)	105, 225, 735, 844, 942, 1158, 1343, 1449
DpnII	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
DraI	TTTAAA	1 cut(s)	354
DrdI	GACNNNNNNGTC	1 cut(s)	519
DseDI	GACNNNNNNGTC	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	892
EarI	CTCTTC	1 cut(s)	892
Ecl136II	GAGCTC	2 cut(s)	915, 1234
Eco130I	CCWWGG	2 cut(s)	999, 1336
Eco24I	GRGCYC	3 cut(s)	60, 917, 1236
Eco32I	GATATC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	955, 1032, 1406
Eco53kI	GAGCTC	2 cut(s)	915, 1234
Eco57I	CTGAAG	1 cut(s)	596
Eco81I	CCTNAGG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	246
EcoICRI	GAGCTC	2 cut(s)	915, 1234
EcoNI	CCTNNNNNAGG	1 cut(s)	611
EcoO109I	RGGNCCY	1 cut(s)	1032
EcoO65I	GGTNACC	1 cut(s)	246
EcoRII	CCWGG	3 cut(s)	529, 1041, 1383
EcoRV	GATATC	1 cut(s)	441
EcoT14I	CCWWGG	2 cut(s)	999, 1336
EcoT22I	ATGCAT	1 cut(s)	495
EcoT38I	GRGCYC	3 cut(s)	60, 917, 1236
ErhI	CCWWGG	2 cut(s)	999, 1336
FaeI	CATG	6 cut(s)	299, 434, 497, 1076, 1340, 1366
FaqI	GGGAC	2 cut(s)	863, 941
FatI	CATG	6 cut(s)	295, 430, 493, 1072, 1336, 1362
FauNDI	CATATG	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	165, 822, 1275
FokI	GGATG	5 cut(s)	56, 180, 448, 1229, 1415
FriOI	GRGCYC	3 cut(s)	60, 917, 1236
Fsp4HI	GCNGC	3 cut(s)	165, 822, 1275
FspBI	CTAG	3 cut(s)	71, 120, 650
GluI	GCNGC	3 cut(s)	165, 822, 1275
GsuI	CTGGAG	5 cut(s)	571, 792, 1010, 1151, 1181
HaeIII	GGCC	3 cut(s)	922, 1046, 1145
HapII	CCGG	1 cut(s)	758
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	6 cut(s)	299, 434, 497, 1076, 1340, 1366
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HindIII	AAGCTT	2 cut(s)	75, 945
HinfI	GANTC	4 cut(s)	5, 299, 714, 1295
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	3 cut(s)	65, 466, 922
Hpy166II	GTNNAC	3 cut(s)	544, 1308, 1409
Hpy188I	TCNGA	5 cut(s)	304, 686, 750, 940, 1300
Hpy188III	TCNNGA	7 cut(s)	71, 632, 809, 1027, 1160, 1363, 1415
Hpy8I	GTNNAC	3 cut(s)	544, 1308, 1409
HpyAV	CCTTC	7 cut(s)	620, 811, 844, 933, 1099, 1129, 1452
HpyCH4III	ACNGT	6 cut(s)	176, 516, 521, 742, 776, 794
HpyCH4V	TGCA	8 cut(s)	167, 206, 323, 428, 493, 929, 1102, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	499, 767
Hsp92II	CATG	6 cut(s)	299, 434, 497, 1076, 1340, 1366
KpnI	GGTACC	1 cut(s)	780
Kzo9I	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
LmnI	GCTCC	2 cut(s)	766, 866
Lsp1109I	GCAGC	3 cut(s)	151, 808, 1261
LweI	GCATC	2 cut(s)	176, 1030
MaeI	CTAG	3 cut(s)	71, 120, 650
MaeIII	GTNAC	4 cut(s)	246, 383, 554, 645
MalI	GATC	8 cut(s)	105, 225, 735, 844, 942, 1158, 1343, 1449
MboI	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
MboII	GAAGA	8 cut(s)	26, 522, 569, 613, 634, 647, 909, 1210
MflI	RGATCY	2 cut(s)	733, 1156
MhlI	GDGCHC	4 cut(s)	60, 917, 1236, 1287
MluCI	AATT	3 cut(s)	147, 967, 1067
MluI	ACGCGT	1 cut(s)	364
MlyI	GAGTC	1 cut(s)	1304
MmeI	TCCRAC	3 cut(s)	106, 221, 664
Mph1103I	ATGCAT	1 cut(s)	495
MseI	TTAA	5 cut(s)	282, 327, 353, 420, 1332
MslI	CAYNNNNRTG	2 cut(s)	552, 1077
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	3 cut(s)	531, 1043, 1385
Mva1269I	GAATGC	2 cut(s)	1231, 1372
MvaI	CCWGG	3 cut(s)	531, 1043, 1385
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	2 cut(s)	499, 767
NcoI	CCATGG	1 cut(s)	1336
NdeI	CATATG	1 cut(s)	658
NdeII	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
NlaIII	CATG	6 cut(s)	299, 434, 497, 1076, 1340, 1366
NlaIV	GGNNCC	5 cut(s)	528, 535, 762, 778, 957
NmeAIII	GCCGAG	1 cut(s)	1150
NmuCI	GTSAC	3 cut(s)	383, 554, 645
NsiI	ATGCAT	1 cut(s)	495
OliI	CACNNNNGTG	1 cut(s)	552
PagI	TCATGA	1 cut(s)	1362
PctI	GAATGC	2 cut(s)	1231, 1372
PfeI	GAWTC	3 cut(s)	5, 299, 714
PkrI	GCNGC	3 cut(s)	166, 823, 1276
PleI	GAGTC	1 cut(s)	1303
PpsI	GAGTC	1 cut(s)	1303
PpuMI	RGGWCCY	1 cut(s)	1032
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	2 cut(s)	917, 1236
Psp5II	RGGWCCY	1 cut(s)	1032
Psp6I	CCWGG	3 cut(s)	529, 1041, 1383
PspEI	GGTNACC	1 cut(s)	246
PspGI	CCWGG	3 cut(s)	529, 1041, 1383
PspN4I	GGNNCC	5 cut(s)	528, 535, 762, 778, 957
PspPI	GGNCC	5 cut(s)	920, 955, 1032, 1143, 1406
PspPPI	RGGWCCY	1 cut(s)	1032
PsuI	RGATCY	2 cut(s)	733, 1156
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	4 cut(s)	114, 518, 702, 778
RsaNI	GTAC	4 cut(s)	113, 517, 701, 777
RseI	CAYNNNNRTG	2 cut(s)	552, 1077
SacI	GAGCTC	2 cut(s)	917, 1236
SaqAI	TTAA	5 cut(s)	282, 327, 353, 420, 1332
SatI	GCNGC	3 cut(s)	165, 822, 1275
Sau3AI	GATC	8 cut(s)	103, 223, 733, 842, 940, 1156, 1341, 1447
Sau96I	GGNCC	5 cut(s)	920, 955, 1032, 1143, 1406
SchI	GAGTC	1 cut(s)	1304
ScrFI	CCNGG	3 cut(s)	531, 1043, 1385
SduI	GDGCHC	4 cut(s)	60, 917, 1236, 1287
SfaNI	GCATC	2 cut(s)	176, 1030
SinI	GGWCC	3 cut(s)	955, 1032, 1406
SmiMI	CAYNNNNRTG	2 cut(s)	552, 1077
Sse9I	AATT	3 cut(s)	147, 967, 1067
SspMI	CTAG	3 cut(s)	71, 120, 650
SstI	GAGCTC	2 cut(s)	917, 1236
StyD4I	CCNGG	3 cut(s)	529, 1041, 1383
StyI	CCWWGG	2 cut(s)	999, 1336
TaaI	ACNGT	6 cut(s)	176, 516, 521, 742, 776, 794
TaqI	TCGA	4 cut(s)	620, 631, 1062, 1450
TasI	AATT	3 cut(s)	147, 967, 1067
TatI	WGTACW	2 cut(s)	516, 700
TfiI	GAWTC	3 cut(s)	5, 299, 714
Tru1I	TTAA	5 cut(s)	282, 327, 353, 420, 1332
Tru9I	TTAA	5 cut(s)	282, 327, 353, 420, 1332
TscAI	CASTG	4 cut(s)	220, 406, 554, 747
TseFI	GTSAC	3 cut(s)	383, 554, 645
TseI	GCWGC	3 cut(s)	164, 821, 1274
Tsp45I	GTSAC	3 cut(s)	383, 554, 645
TspRI	CASTG	4 cut(s)	220, 406, 554, 747
VpaK11BI	GGWCC	3 cut(s)	955, 1032, 1406
XagI	CCTNNNNNAGG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	147
XbaI	TCTAGA	1 cut(s)	70
XspI	CTAG	3 cut(s)	71, 120, 650
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.