FvH4_4g18000

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017649
Physical Location & Seq
Reverse (-)
21956574 .. 21957919
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18000.t1

Sequence Viewer

Length: 990 bp
ATGCCGGCAAACTTGTTCATCAGTTGCTTCGGTTTGCTGCTGATCTTGGTGGGTTTGGTCTCGTCACCGGTCGCCTCTGTGCCTTTGGAGGTTGGTTCCTACCGGAAATCATGCCCCTCGGCGGAGATGATTGTGAGAGATACAGTGAAGAAGGCAGCCGCAACAGATCCGGGCATAGCTGCTGCGCTCATCAGACTCCATTTCCACGATTGCTTTGTCATGGGTTGCGATGCATCAATTCTGCTCGATTCGAAACCTGGCAAGCCAGCTGCAGAAAAAGAAAGCATGGGAAACAAAGGCGTCCAAGGCTTTGAGGTCATAGACGAAGCCAAGGCCAATATAGAAGCTCAATGCCCCAACACCGTCTCCTGTGCAGACATAATCACCTTCGCTGCCCGAGACAGTGTTTTTATCACGGGGGGAACATACTACTCTGCCCCCGGAGGCCGCCGTGACGGAACGGTCTCGTTGGTTTCAGAAGTGACCAAAAACCTCCCTGATGCGTTTTTGAACGCAACACAACTGAAGACCAACTTTGCAAGAAAAGGGTTGTCACTGAAAGATATGGTGACGCTCTCTGGAGCTCACTCCATTGGGGACTCACACTGCTCTTCCTTCTCAAAACGACTGTACTCCTTTAACAAAACACATGCACAAGACCCTGAACTTGATGCGGCTTATGGGGAGTACTTGAAATCCAAATGCCCTAATGTGAAAAATGGTGTTGATCCGGTTGTGGCTTTTGATCCCTTAACCCCAACTTTGCTCGATAACAACTACTATAAGAATTTGGTGGGTCACAAAGGGTTGTTGGCAACGGATCAGGAGCTTTGGAGCAGTGATTTGACTAGGAAGATGGTGAAGTACAACCGAAACCATCCGGGGAGATGGGGTTTGGAGTTTGCTGCTGCGATGGTGAAGATGGGTTCCATTGATGTGTTGGTTGGGAAACAAGGAGAGATCAGGAAGAACTGCAGGGCTGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

330

Amino Acids

35.46

Weight (kDa)

8.48

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 289 3.5e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AciI CCGC 4 cut(s) 122, 159, 448, 674
AclWI GGATC 4 cut(s) 161, 722, 740, 828
AcsI RAATTY 1 cut(s) 787
AcuI CTGAAG 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 300
AfaI GTAC 3 cut(s) 632, 689, 866
AfiI CCNNNNNNNGG 1 cut(s) 121
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 511, 694
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 5 cut(s) 179, 269, 347, 584, 829
AluI AGCT 5 cut(s) 179, 269, 347, 584, 829
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 4 cut(s) 64, 370, 393, 469
AlwI GGATC 4 cut(s) 161, 722, 740, 828
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 2 cut(s) 333, 445
ApeKI GCWGC 8 cut(s) 37, 155, 179, 182, 269, 392, 905, 908
ApoI RAATTY 1 cut(s) 787
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 1 cut(s) 187
AsuC2I CCSGG 3 cut(s) 171, 441, 882
AsuHPI GGTGA 5 cut(s) 57, 376, 580, 871, 928
AsuII TTCGAA 1 cut(s) 251
AvaI CYCGRG 1 cut(s) 396
BanII GRGCYC 1 cut(s) 586
BbsI GAAGAC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 8 cut(s) 24, 166, 167, 169, 256, 379, 892, 895
BccI CCATC 5 cut(s) 850, 882, 885, 907, 916
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 258
BcnI CCSGG 3 cut(s) 171, 441, 882
BcoDI GTCTC 4 cut(s) 64, 370, 393, 469
BfaI CTAG 1 cut(s) 849
BfmI CTRYAG 2 cut(s) 270, 973
BmcAI AGTACT 1 cut(s) 689
Bme1390I CCNGG 4 cut(s) 171, 258, 441, 882
BmeT110I CYCGRG 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 97, 928
BmrFI CCNGG 4 cut(s) 171, 258, 441, 882
BmsI GCATC 4 cut(s) 220, 242, 490, 661
BpiI GAAGAC 1 cut(s) 533
BpmI CTGGAG 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 251
BpuMI CCSGG 3 cut(s) 171, 441, 882
BsaHI GRCGYC 1 cut(s) 300
BsaI GGTCTC 2 cut(s) 64, 469
BsaJI CCNNGG 5 cut(s) 117, 304, 330, 439, 881
BsaWI WCCGGW 3 cut(s) 67, 102, 730
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 877, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 2 cut(s) 4, 67
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 5 cut(s) 117, 304, 330, 439, 881
BseGI GGATG 1 cut(s) 877
BseLI CCNNNNNNNGG 1 cut(s) 121
BseXI GCAGC 8 cut(s) 24, 166, 167, 169, 256, 379, 892, 895
BsgI GTGCAG 1 cut(s) 393
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 2 cut(s) 335, 447
BshTI ACCGGT 1 cut(s) 67
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 7 cut(s) 5, 68, 103, 170, 441, 731, 881
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 4 cut(s) 64, 370, 393, 469
BsmBI CGTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 611
BsnI GGCC 2 cut(s) 335, 447
Bso31I GGTCTC 2 cut(s) 64, 469
BsoBI CYCGRG 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 6 cut(s) 42, 166, 727, 745, 820, 960
BspACI CCGC 4 cut(s) 122, 159, 448, 674
BspANI GGCC 2 cut(s) 335, 447
BspLI GGNNCC 2 cut(s) 97, 928
BspMAI CTGCAG 2 cut(s) 274, 977
BspPI GGATC 4 cut(s) 161, 722, 740, 828
BspQI GCTCTTC 1 cut(s) 616
BspT104I TTCGAA 1 cut(s) 251
BspTNI GGTCTC 2 cut(s) 64, 469
BsrFI RCCGGY 2 cut(s) 4, 67
BssAI RCCGGY 2 cut(s) 4, 67
BssECI CCNNGG 5 cut(s) 117, 304, 330, 439, 881
BssMI GATC 6 cut(s) 42, 166, 727, 745, 820, 960
BssNI GRCGYC 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 304, 330
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 5 cut(s) 145, 364, 404, 463, 630
Bst6I CTCTTC 1 cut(s) 616
BstACI GRCGYC 1 cut(s) 300
BstBI TTCGAA 1 cut(s) 251
BstC8I GCNNGC 3 cut(s) 6, 263, 267
BstF5I GGATG 1 cut(s) 877
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 6 cut(s) 45, 169, 730, 748, 823, 963
BstMAI GTCTC 4 cut(s) 64, 370, 393, 469
BstMBI GATC 6 cut(s) 42, 166, 727, 745, 820, 960
BstMCI CGRYCG 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 4 cut(s) 169, 256, 439, 880
BstSFI CTRYAG 2 cut(s) 270, 973
BstV1I GCAGC 8 cut(s) 24, 166, 167, 169, 256, 379, 892, 895
BstV2I GAAGAC 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 166
BstYI RGATCY 1 cut(s) 166
BsuRI GGCC 2 cut(s) 335, 447
BtgZI GCGATG 2 cut(s) 243, 926
BtsCI GGATG 1 cut(s) 877
BtsI GCAGTG 2 cut(s) 604, 844
BtsIMutI CAGTG 5 cut(s) 150, 409, 554, 604, 844
Cac8I GCNNGC 3 cut(s) 6, 263, 267
CfoI GCGC 1 cut(s) 187
Cfr10I RCCGGY 2 cut(s) 4, 67
CseI GACGC 2 cut(s) 289, 580
Csp6I GTAC 3 cut(s) 631, 688, 865
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 4 cut(s) 111, 220, 286, 650
CviQI GTAC 3 cut(s) 631, 688, 865
DpnI GATC 6 cut(s) 44, 168, 729, 747, 822, 962
DpnII GATC 6 cut(s) 42, 166, 727, 745, 820, 960
DrdI GACNNNNNNGTC 1 cut(s) 461
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
EciI GGCGGA 1 cut(s) 137
Ecl136II GAGCTC 1 cut(s) 584
Eco130I CCWWGG 2 cut(s) 304, 330
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 2 cut(s) 64, 469
Eco53kI GAGCTC 1 cut(s) 584
Eco57I CTGAAG 1 cut(s) 545
Eco88I CYCGRG 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 304, 330
EcoT22I ATGCAT 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 304, 330
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 4 cut(s) 114, 223, 289, 653
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 1 cut(s) 611
FatI CATG 4 cut(s) 110, 219, 285, 649
FokI GGATG 1 cut(s) 864
FriOI GRGCYC 1 cut(s) 586
FspBI CTAG 1 cut(s) 849
GlaI GCGC 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 2 cut(s) 335, 447
HapII CCGG 7 cut(s) 5, 68, 103, 170, 441, 731, 881
HgaI GACGC 2 cut(s) 289, 580
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 300
Hin1II CATG 4 cut(s) 114, 223, 289, 653
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HinfI GANTC 3 cut(s) 195, 248, 599
HpaII CCGG 7 cut(s) 5, 68, 103, 170, 441, 731, 881
HphI GGTGA 5 cut(s) 57, 376, 580, 871, 928
Hpy188I TCNGA 2 cut(s) 194, 478
Hpy188III TCNNGA 3 cut(s) 579, 824, 964
HpyAV CCTTC 3 cut(s) 145, 397, 625
HpyCH4III ACNGT 5 cut(s) 145, 364, 404, 463, 630
HpyCH4V TGCA 6 cut(s) 233, 272, 374, 539, 653, 975
HpyF10VI GCNNNNNNNGC 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 300
Hsp92II CATG 4 cut(s) 114, 223, 289, 653
HspAI GCGC 1 cut(s) 185
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 6 cut(s) 42, 166, 727, 745, 820, 960
LguI GCTCTTC 1 cut(s) 616
LmnI GCTCC 3 cut(s) 581, 826, 834
Lsp1109I GCAGC 8 cut(s) 24, 166, 167, 169, 256, 379, 892, 895
LweI GCATC 4 cut(s) 220, 242, 490, 661
MaeI CTAG 1 cut(s) 849
MaeIII GTNAC 6 cut(s) 63, 452, 481, 552, 568, 797
MalI GATC 6 cut(s) 44, 168, 729, 747, 822, 962
MboI GATC 6 cut(s) 42, 166, 727, 745, 820, 960
MboII GAAGA 6 cut(s) 160, 538, 603, 865, 931, 979
MflI RGATCY 1 cut(s) 166
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 237, 787, 985
MlyI GAGTC 2 cut(s) 189, 593
MnlI CCTC 6 cut(s) 82, 85, 127, 307, 437, 503
Mph1103I ATGCAT 1 cut(s) 235
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 3 cut(s) 639, 752, 988
MslI CAYNNNNRTG 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 7 cut(s) 5, 68, 103, 170, 441, 731, 881
MspR9I CCNGG 4 cut(s) 171, 258, 441, 882
MvaI CCWGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 306
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 3 cut(s) 171, 441, 882
NdeII GATC 6 cut(s) 42, 166, 727, 745, 820, 960
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 4 cut(s) 114, 223, 289, 653
NlaIV GGNNCC 2 cut(s) 97, 928
NmeAIII GCCGAG 1 cut(s) 98
NmuCI GTSAC 6 cut(s) 63, 452, 481, 552, 568, 797
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 1 cut(s) 653
NspV TTCGAA 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 248
PinAI ACCGGT 1 cut(s) 67
PleI GAGTC 2 cut(s) 189, 593
PpsI GAGTC 2 cut(s) 189, 593
Psp124BI GAGCTC 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 97, 928
PstI CTGCAG 2 cut(s) 274, 977
PsuI RGATCY 1 cut(s) 166
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 3 cut(s) 632, 689, 866
RsaNI GTAC 3 cut(s) 631, 688, 865
RseI CAYNNNNRTG 1 cut(s) 935
SacI GAGCTC 1 cut(s) 586
SapI GCTCTTC 1 cut(s) 616
SaqAI TTAA 3 cut(s) 639, 752, 988
Sau3AI GATC 6 cut(s) 42, 166, 727, 745, 820, 960
ScaI AGTACT 1 cut(s) 689
SchI GAGTC 2 cut(s) 189, 593
ScrFI CCNGG 4 cut(s) 171, 258, 441, 882
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 4 cut(s) 220, 242, 490, 661
SfcI CTRYAG 2 cut(s) 270, 973
SfuI TTCGAA 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 935
Sse9I AATT 3 cut(s) 237, 787, 985
SsiI CCGC 4 cut(s) 122, 159, 448, 674
SspMI CTAG 1 cut(s) 849
SstI GAGCTC 1 cut(s) 586
StyD4I CCNGG 4 cut(s) 169, 256, 439, 880
StyI CCWWGG 2 cut(s) 304, 330
TaaI ACNGT 5 cut(s) 145, 364, 404, 463, 630
TaqI TCGA 3 cut(s) 246, 251, 768
TasI AATT 3 cut(s) 237, 787, 985
TatI WGTACW 3 cut(s) 630, 687, 864
TauI GCSGC 3 cut(s) 161, 450, 677
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 639, 752, 988
Tru9I TTAA 3 cut(s) 639, 752, 988
TscAI CASTG 5 cut(s) 150, 409, 561, 611, 844
TseFI GTSAC 6 cut(s) 63, 452, 481, 552, 568, 797
TseI GCWGC 8 cut(s) 37, 155, 179, 182, 269, 392, 905, 908
Tsp45I GTSAC 6 cut(s) 63, 452, 481, 552, 568, 797
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 2 cut(s) 471, 833
TspRI CASTG 5 cut(s) 150, 409, 561, 611, 844
XapI RAATTY 1 cut(s) 787
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 937
XspI CTAG 1 cut(s) 849
ZrmI AGTACT 1 cut(s) 689
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.