Rorug04G0178500

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0017649
Physical Location & Seq
Reverse (-)
31305959 .. 31306763
805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0178500.1

Sequence Viewer

Length: 315 bp
ATGCTGAAAATGATGGGAAAAACGTGTTCTCCTTCTTCTATTTCTTATTGCAGCAGCAGAAGAGTGGCTGAGGCTGCACGAATTTTCACCAAAATGCTGGAGGGAGGTCAATGTAAGCCGGATGTGGTTACTTTCACCACACTAATAAAGGGCTTTTGCAAGATGGGGAACAACAGTGCGGCTATGCAATTACTTAGGAAGATGGAAGAAAGAGGATGCAAGCCTGACATAGTTTCCTATAACACCATCATCGACAGTCTATGCAAGGATATACTAATTGATGAAACATTTGAACCTCTTCAAAGAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

104

Amino Acids

11.65

Weight (kDa)

8.57

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 16 - 54 2.8e-10 PPR repeat family
PPR_1 PF12854 38 - 69 1.7e-14 PPR repeat
PPR_3 PF13812 38 - 85 2.4e-14 Pentatricopeptide repeat domain
PPR_2 PF13041 40 - 89 6.7e-20 PPR repeat family
PPR PF01535 43 - 73 7e-09 PPR repeat
PPR_1 PF12854 71 - 98 3.6e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 81
AflIII ACRYGT 1 cut(s) 23
AgsI TTSAA 2 cut(s) 293, 302
ApeKI GCWGC 3 cut(s) 51, 54, 74
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 1 cut(s) 297
AsuHPI GGTGA 2 cut(s) 79, 127
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 61, 63, 66
BccI CCATC 4 cut(s) 7, 157, 196, 254
BisI GCNGC 4 cut(s) 52, 55, 75, 180
BlsI GCNGC 4 cut(s) 53, 56, 76, 181
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 119
Bpu10I CCTNAGC 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
BseGI GGATG 2 cut(s) 127, 221
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 61, 63, 66
BsgI GTGCAG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 119
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 176, 257
Bst6I CTCTTC 2 cut(s) 55, 303
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 69, 194
BstF5I GGATG 2 cut(s) 127, 221
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstV1I GCAGC 3 cut(s) 61, 63, 66
BstXI CCANNNNNNTGG 1 cut(s) 97
BtsCI GGATG 2 cut(s) 127, 221
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 221
CviJI RGCY 6 cut(s) 68, 74, 118, 153, 182, 223
CviKI_1 RGCY 6 cut(s) 68, 74, 118, 153, 182, 223
DdeI CTNAG 2 cut(s) 69, 194
Eam1104I CTCTTC 2 cut(s) 55, 303
EarI CTCTTC 2 cut(s) 55, 303
FaiI YATR 5 cut(s) 185, 230, 240, 262, 272
Fnu4HI GCNGC 4 cut(s) 52, 55, 75, 180
FokI GGATG 2 cut(s) 134, 228
Fsp4HI GCNGC 4 cut(s) 52, 55, 75, 180
GluI GCNGC 4 cut(s) 52, 55, 75, 180
GsuI CTGGAG 1 cut(s) 119
HapII CCGG 1 cut(s) 119
HpaII CCGG 1 cut(s) 119
HphI GGTGA 2 cut(s) 79, 127
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 176, 257
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 6 cut(s) 51, 77, 159, 187, 219, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 2 cut(s) 69, 194
HpySE526I ACGT 1 cut(s) 23
LpnPI CCDG 3 cut(s) 83, 132, 237
Lsp1109I GCAGC 3 cut(s) 61, 63, 66
LweI GCATC 1 cut(s) 206
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 127
MboII GAAGA 5 cut(s) 27, 72, 211, 218, 290
MluCI AATT 3 cut(s) 81, 188, 276
MnlI CCTC 5 cut(s) 64, 94, 98, 206, 306
MroXI GAANNNNTTC 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 74
PdmI GAANNNNTTC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 53, 56, 76, 181
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 4 cut(s) 52, 55, 75, 180
SetI ASST 3 cut(s) 26, 109, 298
SfaNI GCATC 1 cut(s) 206
SgeI CNNG 8 cut(s) 36, 90, 110, 131, 172, 232, 236, 277
SmiMI CAYNNNNRTG 1 cut(s) 92
Sse9I AATT 3 cut(s) 81, 188, 276
SsiI CCGC 1 cut(s) 179
TaaI ACNGT 2 cut(s) 176, 257
TaiI ACGT 1 cut(s) 26
TaqI TCGA 1 cut(s) 252
TasI AATT 3 cut(s) 81, 188, 276
TauI GCSGC 1 cut(s) 182
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 51, 54, 74
TspDTI ATGAA 1 cut(s) 297
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.