Rroxscaffold_5G00364320

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017649
Physical Location & Seq
Reverse (-)
45563762 .. 45565109
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364320.1

Sequence Viewer

Length: 984 bp
ATGGCAAACTTGTTCATCACTTGCTTCGGCTTGCTGCTCTTGGTGGTTTTGGTCTCGTCACCGGTCGCCTCTGTGCCTTTGGAGGTTGGTTTCTACCGGAAATCATGCCCCTCGGCCGAGACGATTGTGAGAGATACATTGAAGAAGGCAGCTGCAACCGATCCTGCCATAGCTGCAGCCCTCATCAGACTCCATTTCCACGATTGCTTTGTGAGGGGTTGCGATGCATCAATTTTGCTGGATTCTAAACCGGGGAAGCCAGCTGCAGAAAAAGAAAGCATGGGAAACAAAGGCGTCCAAGGCTTTGAGGTCATAGACGAAGCCAAGGCCAGGATAGAAGCTCAGTGCCCCAACACTGTCTCCTGTGCAGACATAATCACCTTCGCTGCCCGAGACAGTGTTTTCACCGCCGGGGGAACTTACTATTCAGCCCCCGGAGGCCGCCTTGACGGAACGGTCTCGTTGGCTTCGGAAGTGATCAAAAACCTCCCTGATGCATTCTTCAACGCAACACAACTGAAGACCAACTTTGCAAGGAAAGGGTTGTCTCTAGAGGACATGGTGACACTCTCCGGAGCTCACTCCATTGGGGACTCACACTGCTCTTCCTTCTCAAAACGACTATACTCCTTTAACAAAACGCATGCACAAGACCCTGAGATAAATAAGGCTTATGGGGAGTACTTGAAATCCAAATGCCCTAATGTGAAAAATGGTGTTGACCCGGTTGTGGCTTTTGATCCTTTGACCCCAACTTTGCTTGATAACAACTACTATAAGAATTTGGTGAGTCACAAGGGGCTGTTGGCTTCGGACCAGGAGCTTTGGAGCAGTGACTTAACTAGGAAGATGGTGAAGTACCACAGGAACCATCCGAGGAAATGGGGTTTGGAGTTTGCCGCTGCGATGGTGAAGATGGGTTCCATTGATGTGTTGGTTGGGAAACAAGGAGAGATCAGGAAGAACTGCAGGGCCGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

327

Amino Acids

35.53

Weight (kDa)

8.75

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 43 - 288 5.6e-85 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 572
AciI CCGC 3 cut(s) 408, 442, 900
AclWI GGATC 2 cut(s) 155, 734
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 1 cut(s) 781
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 294
AfaI GTAC 2 cut(s) 683, 860
AfiI CCNNNNNNNGG 2 cut(s) 330, 730
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 3 cut(s) 142, 505, 688
AjnI CCWGG 2 cut(s) 329, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 872, 904
AluBI AGCT 6 cut(s) 152, 173, 263, 341, 578, 823
AluI AGCT 6 cut(s) 152, 173, 263, 341, 578, 823
Alw21I GWGCWC 1 cut(s) 580
Alw26I GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
AlwI GGATC 2 cut(s) 155, 734
Ama87I CYCGRG 1 cut(s) 390
Aor13HI TCCGGA 1 cut(s) 572
AoxI GGCC 4 cut(s) 114, 327, 439, 972
ApeKI GCWGC 8 cut(s) 34, 149, 152, 173, 176, 263, 386, 902
ApoI RAATTY 1 cut(s) 781
ArsI GACNNNNNNTTYG 2 cut(s) 739, 771
AsiGI ACCGGT 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 814, 972
AsuC2I CCSGG 4 cut(s) 252, 412, 435, 725
AsuHPI GGTGA 7 cut(s) 51, 370, 397, 574, 799, 865, 922
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 1 cut(s) 814
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 580
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 580
BbvI GCAGC 8 cut(s) 21, 139, 160, 161, 188, 250, 373, 889
BccI CCATC 4 cut(s) 844, 879, 901, 910
BceAI ACGGC 1 cut(s) 959
BciT130I CCWGG 2 cut(s) 331, 818
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 4 cut(s) 252, 412, 435, 725
BcoDI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BfaI CTAG 2 cut(s) 551, 843
BfmI CTRYAG 3 cut(s) 174, 264, 967
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
Bme18I GGWCC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 2 cut(s) 814, 972
BmiI GGNNCC 2 cut(s) 869, 922
BmrFI CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
BmsI GCATC 3 cut(s) 214, 236, 484
BpiI GAAGAC 1 cut(s) 527
BpuMI CCSGG 4 cut(s) 252, 412, 435, 725
BsaHI GRCGYC 1 cut(s) 294
BsaI GGTCTC 2 cut(s) 58, 463
BsaJI CCNNGG 7 cut(s) 111, 251, 298, 324, 411, 433, 875
BsaWI WCCGGW 3 cut(s) 61, 96, 572
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 330, 730
Bse118I RCCGGY 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 572
BseBI CCWGG 2 cut(s) 331, 818
BseDI CCNNGG 7 cut(s) 111, 251, 298, 324, 411, 433, 875
BseGI GGATG 1 cut(s) 871
BseLI CCNNNNNNNGG 2 cut(s) 330, 730
BseMII CTCAG 2 cut(s) 356, 648
BseSI GKGCMC 1 cut(s) 350
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 8 cut(s) 21, 139, 160, 161, 188, 250, 373, 889
BsgI GTGCAG 1 cut(s) 387
Bsh1285I CGRYCG 2 cut(s) 66, 117
BshFI GGCC 4 cut(s) 116, 329, 441, 974
BshTI ACCGGT 1 cut(s) 61
BsiEI CGRYCG 2 cut(s) 66, 117
BsiHKAI GWGCWC 1 cut(s) 580
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 7 cut(s) 62, 97, 251, 411, 435, 573, 725
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 2 cut(s) 330, 730
BsmAI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 605
BsmI GAATGC 1 cut(s) 497
BsnI GGCC 4 cut(s) 116, 329, 441, 974
Bso31I GGTCTC 2 cut(s) 58, 463
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 2 cut(s) 350, 580
Bsp13I TCCGGA 1 cut(s) 572
Bsp143I GATC 4 cut(s) 160, 477, 739, 954
BspACI CCGC 3 cut(s) 408, 442, 900
BspANI GGCC 4 cut(s) 116, 329, 441, 974
BspCNI CTCAG 2 cut(s) 355, 649
BspEI TCCGGA 1 cut(s) 572
BspLI GGNNCC 2 cut(s) 869, 922
BspMAI CTGCAG 3 cut(s) 178, 268, 971
BspPI GGATC 2 cut(s) 155, 734
BspQI GCTCTTC 1 cut(s) 610
BspTNI GGTCTC 2 cut(s) 58, 463
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 7 cut(s) 111, 251, 298, 324, 411, 433, 875
BssMI GATC 4 cut(s) 160, 477, 739, 954
BssNI GRCGYC 1 cut(s) 294
BssT1I CCWWGG 2 cut(s) 298, 324
Bst2UI CCWGG 2 cut(s) 331, 818
Bst4CI ACNGT 3 cut(s) 358, 398, 457
Bst6I CTCTTC 1 cut(s) 610
BstACI GRCGYC 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 32, 261, 645
BstDEI CTNAG 2 cut(s) 342, 657
BstF5I GGATG 1 cut(s) 871
BstKTI GATC 4 cut(s) 163, 480, 742, 957
BstMAI GTCTC 6 cut(s) 58, 113, 364, 387, 463, 552
BstMBI GATC 4 cut(s) 160, 477, 739, 954
BstMCI CGRYCG 2 cut(s) 66, 117
BstMWI GCNNNNNNNGC 2 cut(s) 173, 300
BstNI CCWGG 2 cut(s) 331, 818
BstNSI RCATGY 1 cut(s) 647
BstSCI CCNGG 6 cut(s) 250, 329, 410, 433, 723, 816
BstSFI CTRYAG 3 cut(s) 174, 264, 967
BstSLI GKGCMC 1 cut(s) 350
BstV1I GCAGC 8 cut(s) 21, 139, 160, 161, 188, 250, 373, 889
BstV2I GAAGAC 1 cut(s) 527
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 4 cut(s) 116, 329, 441, 974
BtgZI GCGATG 2 cut(s) 237, 920
BtsCI GGATG 1 cut(s) 871
BtsI GCAGTG 2 cut(s) 598, 838
BtsIMutI CAGTG 5 cut(s) 350, 354, 403, 598, 838
Cac8I GCNNGC 3 cut(s) 32, 261, 645
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 814, 972
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 682, 859
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 4 cut(s) 105, 280, 559, 644
CviQI GTAC 2 cut(s) 682, 859
DdeI CTNAG 2 cut(s) 342, 657
DpnI GATC 4 cut(s) 162, 479, 741, 956
DpnII GATC 4 cut(s) 160, 477, 739, 954
DrdI GACNNNNNNGTC 1 cut(s) 455
DseDI GACNNNNNNGTC 1 cut(s) 455
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 610
Ecl136II GAGCTC 1 cut(s) 578
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 298, 324
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 2 cut(s) 58, 463
Eco47I GGWCC 1 cut(s) 814
Eco52I CGGCCG 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 329, 816
EcoT14I CCWWGG 2 cut(s) 298, 324
EcoT22I ATGCAT 2 cut(s) 229, 499
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 298, 324
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 4 cut(s) 108, 283, 562, 647
FalI AAGNNNNNCTT 2 cut(s) 512, 544
FaqI GGGAC 1 cut(s) 605
FatI CATG 4 cut(s) 104, 279, 558, 643
FbaI TGATCA 1 cut(s) 477
FokI GGATG 1 cut(s) 858
FriOI GRGCYC 1 cut(s) 580
FspBI CTAG 2 cut(s) 551, 843
HaeIII GGCC 4 cut(s) 116, 329, 441, 974
HapII CCGG 7 cut(s) 62, 97, 251, 411, 435, 573, 725
HgaI GACGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 294
Hin1II CATG 4 cut(s) 108, 283, 562, 647
HincII GTYRAC 1 cut(s) 721
HindII GTYRAC 1 cut(s) 721
HinfI GANTC 4 cut(s) 189, 242, 593, 790
HpaII CCGG 7 cut(s) 62, 97, 251, 411, 435, 573, 725
HphI GGTGA 7 cut(s) 51, 370, 397, 574, 799, 865, 922
Hpy166II GTNNAC 1 cut(s) 721
Hpy188I TCNGA 4 cut(s) 188, 472, 814, 876
Hpy188III TCNNGA 3 cut(s) 551, 573, 958
Hpy8I GTNNAC 1 cut(s) 721
HpyAV CCTTC 3 cut(s) 139, 391, 619
HpyCH4III ACNGT 3 cut(s) 358, 398, 457
HpyCH4V TGCA 9 cut(s) 155, 176, 227, 266, 368, 497, 533, 647, 969
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 300
HpyF3I CTNAG 2 cut(s) 342, 657
Hsp92I GRCGYC 1 cut(s) 294
Hsp92II CATG 4 cut(s) 108, 283, 562, 647
Kpn2I TCCGGA 1 cut(s) 572
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 4 cut(s) 160, 477, 739, 954
LguI GCTCTTC 1 cut(s) 610
LmnI GCTCC 3 cut(s) 575, 820, 828
Lsp1109I GCAGC 8 cut(s) 21, 139, 160, 161, 188, 250, 373, 889
LweI GCATC 3 cut(s) 214, 236, 484
MaeI CTAG 2 cut(s) 551, 843
MaeIII GTNAC 4 cut(s) 57, 562, 791, 833
MalI GATC 4 cut(s) 162, 479, 741, 956
MboI GATC 4 cut(s) 160, 477, 739, 954
MboII GAAGA 7 cut(s) 154, 493, 532, 597, 859, 925, 973
MhlI GDGCHC 2 cut(s) 350, 580
MluCI AATT 3 cut(s) 231, 781, 979
MlyI GAGTC 3 cut(s) 183, 587, 799
Mph1103I ATGCAT 2 cut(s) 229, 499
MroI TCCGGA 1 cut(s) 572
MseI TTAA 3 cut(s) 633, 839, 982
MslI CAYNNNNRTG 1 cut(s) 929
MspA1I CMGCKG 3 cut(s) 152, 263, 902
MspI CCGG 7 cut(s) 62, 97, 251, 411, 435, 573, 725
MspR9I CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
Mva1269I GAATGC 1 cut(s) 497
MvaI CCWGG 2 cut(s) 331, 818
MwoI GCNNNNNNNGC 2 cut(s) 173, 300
NciI CCSGG 4 cut(s) 252, 412, 435, 725
NdeII GATC 4 cut(s) 160, 477, 739, 954
NlaIII CATG 4 cut(s) 108, 283, 562, 647
NlaIV GGNNCC 2 cut(s) 869, 922
NmeAIII GCCGAG 2 cut(s) 92, 142
NmuCI GTSAC 4 cut(s) 57, 562, 791, 833
NsiI ATGCAT 2 cut(s) 229, 499
NspI RCATGY 1 cut(s) 647
PaeI GCATGC 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PctI GAATGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 242
PinAI ACCGGT 1 cut(s) 61
PleI GAGTC 3 cut(s) 183, 587, 798
PpsI GAGTC 3 cut(s) 183, 587, 798
Psp124BI GAGCTC 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 329, 816
PspGI CCWGG 2 cut(s) 329, 816
PspN4I GGNNCC 2 cut(s) 869, 922
PspPI GGNCC 2 cut(s) 814, 972
PstI CTGCAG 3 cut(s) 178, 268, 971
PvuII CAGCTG 2 cut(s) 152, 263
RsaI GTAC 2 cut(s) 683, 860
RsaNI GTAC 2 cut(s) 682, 859
RseI CAYNNNNRTG 1 cut(s) 929
SacI GAGCTC 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 610
SaqAI TTAA 3 cut(s) 633, 839, 982
Sau3AI GATC 4 cut(s) 160, 477, 739, 954
Sau96I GGNCC 2 cut(s) 814, 972
ScaI AGTACT 1 cut(s) 683
SchI GAGTC 3 cut(s) 183, 587, 799
ScrFI CCNGG 6 cut(s) 252, 331, 412, 435, 725, 818
SduI GDGCHC 2 cut(s) 350, 580
SfaNI GCATC 3 cut(s) 214, 236, 484
SfcI CTRYAG 3 cut(s) 174, 264, 967
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 1 cut(s) 929
SphI GCATGC 1 cut(s) 647
Sse9I AATT 3 cut(s) 231, 781, 979
SsiI CCGC 3 cut(s) 408, 442, 900
SspMI CTAG 2 cut(s) 551, 843
SstI GAGCTC 1 cut(s) 580
StyD4I CCNGG 6 cut(s) 250, 329, 410, 433, 723, 816
StyI CCWWGG 2 cut(s) 298, 324
TaaI ACNGT 3 cut(s) 358, 398, 457
TasI AATT 3 cut(s) 231, 781, 979
TatI WGTACW 1 cut(s) 681
TauI GCSGC 2 cut(s) 444, 902
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 3 cut(s) 633, 839, 982
Tru9I TTAA 3 cut(s) 633, 839, 982
TscAI CASTG 5 cut(s) 350, 361, 403, 605, 838
TseFI GTSAC 4 cut(s) 57, 562, 791, 833
TseI GCWGC 8 cut(s) 34, 149, 152, 173, 176, 263, 386, 902
Tsp45I GTSAC 4 cut(s) 57, 562, 791, 833
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 5 cut(s) 350, 361, 403, 605, 838
VpaK11BI GGWCC 1 cut(s) 814
XapI RAATTY 1 cut(s) 781
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 647
XcmI CCANNNNNNNNNTGG 1 cut(s) 931
XspI CTAG 2 cut(s) 551, 843
ZrmI AGTACT 1 cut(s) 683
Zsp2I ATGCAT 2 cut(s) 229, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.