Rmu_co8258485.1_g000001

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8258485.1
OG0017649
Physical Location & Seq
Forward (+)
1 .. 804
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8258485.1_g000001.1.cds

Sequence Viewer

Length: 561 bp
ggttgcgatgcatcaattttgctggattctaaaccggggaagccagctgcagaaaaagaaagcatgggaaacaaaggcgtccaaggctttgaggtcatagacgaagccaaggccaggatagaagctcagtgccccaacactgtctcctgtgcagacataatcaccttcgctgcccgagacagtgttttcaccgccgggggaacttactattcagcccccggaggccgccgtgacggaacggtctcgttggcttcggaagtgaccaaaaacctccctgatgcattcttcaacgcaacacaactgaagaccaactttgcaagaaaagggttgtctctagaggacatggtgacactctccggagctcactccattggggactcacactgctcttccttctcaaaacgactatactcctttaacaaaacgcatgcacaagaccctgagataaataaggcttatggggagtacttgaaatccaaatgccctaatgtgaaaaatggtgttgacccggttgtggcttttgatcctttgaccccaactttgcttgataacaactactat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

187

Amino Acids

20.06

Weight (kDa)

5.94

Isoelectric Point (pI)

32.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 356
AciI CCGC 2 cut(s) 192, 226
AclWI GGATC 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 323
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 114, 514
AgsI TTSAA 2 cut(s) 289, 472
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 3 cut(s) 47, 125, 362
AluI AGCT 3 cut(s) 47, 125, 362
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 4 cut(s) 148, 171, 247, 336
AlwI GGATC 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 174
Aor13HI TCCGGA 1 cut(s) 356
AoxI GGCC 2 cut(s) 111, 223
ApeKI GCWGC 2 cut(s) 47, 170
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
AsuC2I CCSGG 4 cut(s) 36, 196, 219, 509
AsuHPI GGTGA 3 cut(s) 154, 181, 358
AvaI CYCGRG 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 2 cut(s) 34, 157
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 115
BcnI CCSGG 4 cut(s) 36, 196, 219, 509
BcoDI GTCTC 4 cut(s) 148, 171, 247, 336
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 48
BisI GCNGC 3 cut(s) 48, 171, 226
BlsI GCNGC 3 cut(s) 49, 172, 227
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 5 cut(s) 36, 115, 196, 219, 509
BmeT110I CYCGRG 1 cut(s) 174
BmrFI CCNGG 5 cut(s) 36, 115, 196, 219, 509
BmsI GCATC 2 cut(s) 20, 268
BpiI GAAGAC 1 cut(s) 311
BpuMI CCSGG 4 cut(s) 36, 196, 219, 509
BsaHI GRCGYC 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 247
BsaJI CCNNGG 5 cut(s) 35, 82, 108, 195, 217
BsaWI WCCGGW 1 cut(s) 356
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 514
BseAI TCCGGA 1 cut(s) 356
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 5 cut(s) 35, 82, 108, 195, 217
BseLI CCNNNNNNNGG 2 cut(s) 114, 514
BseMII CTCAG 2 cut(s) 140, 432
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 2 cut(s) 34, 157
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 2 cut(s) 113, 225
BsiHKAI GWGCWC 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 5 cut(s) 35, 195, 219, 357, 509
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 2 cut(s) 114, 514
BsmAI GTCTC 4 cut(s) 148, 171, 247, 336
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 2 cut(s) 113, 225
Bso31I GGTCTC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 134, 364
Bsp13I TCCGGA 1 cut(s) 356
Bsp143I GATC 1 cut(s) 523
BspACI CCGC 2 cut(s) 192, 226
BspANI GGCC 2 cut(s) 113, 225
BspCNI CTCAG 2 cut(s) 139, 433
BspEI TCCGGA 1 cut(s) 356
BspMAI CTGCAG 1 cut(s) 52
BspPI GGATC 1 cut(s) 518
BspQI GCTCTTC 1 cut(s) 394
BspTNI GGTCTC 1 cut(s) 247
BssECI CCNNGG 5 cut(s) 35, 82, 108, 195, 217
BssMI GATC 1 cut(s) 523
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 2 cut(s) 82, 108
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 142, 182, 241
Bst6I CTCTTC 1 cut(s) 394
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 45, 429
BstDEI CTNAG 2 cut(s) 126, 441
BstKTI GATC 1 cut(s) 526
BstMAI GTCTC 4 cut(s) 148, 171, 247, 336
BstMBI GATC 1 cut(s) 523
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 5 cut(s) 34, 113, 194, 217, 507
BstSFI CTRYAG 1 cut(s) 48
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 2 cut(s) 34, 157
BstV2I GAAGAC 1 cut(s) 311
BsuRI GGCC 2 cut(s) 113, 225
BtgZI GCGATG 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 382
BtsIMutI CAGTG 4 cut(s) 134, 138, 187, 382
Cac8I GCNNGC 2 cut(s) 45, 429
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 466
CviAII CATG 3 cut(s) 64, 343, 428
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 2 cut(s) 126, 441
DpnI GATC 1 cut(s) 525
DpnII GATC 1 cut(s) 523
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 394
Ecl136II GAGCTC 1 cut(s) 362
Eco130I CCWWGG 2 cut(s) 82, 108
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 247
Eco53kI GAGCTC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 174
EcoICRI GAGCTC 1 cut(s) 362
EcoRII CCWGG 1 cut(s) 113
EcoT14I CCWWGG 2 cut(s) 82, 108
EcoT22I ATGCAT 2 cut(s) 13, 283
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 2 cut(s) 82, 108
FaeI CATG 3 cut(s) 67, 346, 431
FaiI YATR 7 cut(s) 65, 98, 158, 344, 409, 429, 459
FalI AAGNNNNNCTT 2 cut(s) 296, 328
FaqI GGGAC 1 cut(s) 389
FatI CATG 3 cut(s) 63, 342, 427
Fnu4HI GCNGC 3 cut(s) 48, 171, 226
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 3 cut(s) 48, 171, 226
FspBI CTAG 1 cut(s) 335
GluI GCNGC 3 cut(s) 48, 171, 226
HaeIII GGCC 2 cut(s) 113, 225
HapII CCGG 5 cut(s) 35, 195, 219, 357, 509
HgaI GACGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 3 cut(s) 67, 346, 431
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 2 cut(s) 26, 377
HpaII CCGG 5 cut(s) 35, 195, 219, 357, 509
HphI GGTGA 3 cut(s) 154, 181, 358
Hpy166II GTNNAC 1 cut(s) 505
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 335, 357
Hpy8I GTNNAC 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 175, 403
HpyCH4III ACNGT 3 cut(s) 142, 182, 241
HpyCH4V TGCA 6 cut(s) 11, 50, 152, 281, 317, 431
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 2 cut(s) 126, 441
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 3 cut(s) 67, 346, 431
Kpn2I TCCGGA 1 cut(s) 356
Kzo9I GATC 1 cut(s) 523
LguI GCTCTTC 1 cut(s) 394
LmnI GCTCC 1 cut(s) 359
Lsp1109I GCAGC 2 cut(s) 34, 157
LweI GCATC 2 cut(s) 20, 268
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 230, 259, 346
MalI GATC 1 cut(s) 525
MboI GATC 1 cut(s) 523
MboII GAAGA 3 cut(s) 277, 316, 381
MhlI GDGCHC 2 cut(s) 134, 364
MluCI AATT 1 cut(s) 15
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 4 cut(s) 85, 215, 281, 331
Mph1103I ATGCAT 2 cut(s) 13, 283
MroI TCCGGA 1 cut(s) 356
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 5 cut(s) 35, 195, 219, 357, 509
MspR9I CCNGG 5 cut(s) 36, 115, 196, 219, 509
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 4 cut(s) 36, 196, 219, 509
NdeII GATC 1 cut(s) 523
NlaIII CATG 3 cut(s) 67, 346, 431
NmuCI GTSAC 3 cut(s) 230, 259, 346
NsiI ATGCAT 2 cut(s) 13, 283
NspI RCATGY 1 cut(s) 431
PaeI GCATGC 1 cut(s) 431
PciSI GCTCTTC 1 cut(s) 394
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 3 cut(s) 49, 172, 227
PleI GAGTC 1 cut(s) 371
PpsI GAGTC 1 cut(s) 371
Psp124BI GAGCTC 1 cut(s) 364
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PstI CTGCAG 1 cut(s) 52
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SacI GAGCTC 1 cut(s) 364
SapI GCTCTTC 1 cut(s) 394
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 3 cut(s) 48, 171, 226
Sau3AI GATC 1 cut(s) 523
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 5 cut(s) 36, 115, 196, 219, 509
SduI GDGCHC 2 cut(s) 134, 364
SetI ASST 6 cut(s) 49, 96, 127, 167, 273, 364
SfaNI GCATC 2 cut(s) 20, 268
SfcI CTRYAG 1 cut(s) 48
SphI GCATGC 1 cut(s) 431
Sse9I AATT 1 cut(s) 15
SsiI CCGC 2 cut(s) 192, 226
SspMI CTAG 1 cut(s) 335
SstI GAGCTC 1 cut(s) 364
StyD4I CCNGG 5 cut(s) 34, 113, 194, 217, 507
StyI CCWWGG 2 cut(s) 82, 108
TaaI ACNGT 3 cut(s) 142, 182, 241
TasI AATT 1 cut(s) 15
TatI WGTACW 1 cut(s) 465
TauI GCSGC 1 cut(s) 228
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 4 cut(s) 134, 145, 187, 389
TseFI GTSAC 3 cut(s) 230, 259, 346
TseI GCWGC 2 cut(s) 47, 170
Tsp45I GTSAC 3 cut(s) 230, 259, 346
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 4 cut(s) 134, 145, 187, 389
XbaI TCTAGA 1 cut(s) 334
XceI RCATGY 1 cut(s) 431
XspI CTAG 1 cut(s) 335
ZrmI AGTACT 1 cut(s) 467
Zsp2I ATGCAT 2 cut(s) 13, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.