Rh4AG237600

Peroxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017649
Physical Location & Seq
Reverse (-)
54345744 .. 54346448
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG237600.1

Sequence Viewer

Length: 705 bp
ATGGGAAACAAAGGCGTCCAAGGCTTTGAGGTCATAGACGAAGCCAAGGCCAGGATAGAAGCTCAGTGCCCCAACACTGTCTCCTGTGCAGACATAATCACCTTCGCTGCCCGAGACAGTGTTTTCACCACCGGGGGAACTTACTATTCAGCCCCCGGAGGCCGCCGTGACGGAACGGTCTCGTTGGCTTCGGAAGTGATCAAAAACCTCCCTGATGCATTCTTCAACGCAACACAACTGAAGACCAACTTTGCAAGAAAAGGGTTGTCTCTAGAGGATATGGTGACACTCTCCGGAGCTCACTCCATTGGGGACTCACACTGCTCTTCCTTCTCAAAACGACTATACTCCTTTAAAAAAACGCATGCACAAGACCCTGAGATAAATATGGCTTATGGGGAGTACTTGAAATCCAAATGCCCTAATGTGAAAAATGGTGTTGACCCGGTTGTGGCTTTTGATCCTTTGACCCCAACTTTGCTTGATAACAACTACTATAAGAATTTGGTGAGTCACAAGGGGCTGTTGGCTTCGGACCAGGAGCTTTGGAGCAGTGACTTAACTAGGAAGATGGTGAAGTACCGCAGGAACCATCCGAGGAAATGGGGTTTGGAGTTTGCTGCTGCGATGGTGAAGATGGGTTCCATTGATGTGTTGGTTGGGAAACAAGGAGAGATCAGGAAGAACTGCAGGGCCGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

234

Amino Acids

25.77

Weight (kDa)

9.12

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 3 - 194 6.9e-65 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017649)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18000
prunus_persica Prupe.1G137100_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0422201
rosa_laevigata RLG00000007628
rosa_multiflora Rmu_co8258485.1_g000001
rosa_roxburghii Rroxscaffold_5G00364320
rosa_rugosa Rorug04G0178500
rosa_samantha Rh4AG237600 Rh4BG240800 Rh4CG252700 Rh4DG236400
rosa_wichuraiana Rw4G020560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
AccIII TCCGGA 1 cut(s) 293
AciI CCGC 2 cut(s) 163, 583
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 502
AcuI CTGAAG 1 cut(s) 260
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 404, 581
AfiI CCNNNNNNNGG 2 cut(s) 51, 451
AgsI TTSAA 2 cut(s) 226, 409
AjnI CCWGG 2 cut(s) 50, 537
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 3 cut(s) 62, 299, 544
AluI AGCT 3 cut(s) 62, 299, 544
Alw21I GWGCWC 1 cut(s) 301
Alw26I GTCTC 4 cut(s) 85, 108, 184, 273
AlwI GGATC 1 cut(s) 455
Ama87I CYCGRG 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 293
AoxI GGCC 3 cut(s) 48, 160, 693
ApeKI GCWGC 3 cut(s) 107, 620, 623
ApoI RAATTY 1 cut(s) 502
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspS9I GGNCC 2 cut(s) 535, 693
AsuC2I CCSGG 3 cut(s) 133, 156, 446
AsuHPI GGTGA 6 cut(s) 91, 118, 295, 520, 586, 643
AvaI CYCGRG 1 cut(s) 111
AvaII GGWCC 1 cut(s) 535
BaeGI GKGCMC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 301
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 301
BbvI GCAGC 3 cut(s) 94, 607, 610
BccI CCATC 4 cut(s) 565, 600, 622, 631
BceAI ACGGC 2 cut(s) 150, 680
BciT130I CCWGG 2 cut(s) 52, 539
BclI TGATCA 1 cut(s) 198
BcnI CCSGG 3 cut(s) 133, 156, 446
BcoDI GTCTC 4 cut(s) 85, 108, 184, 273
BfaI CTAG 2 cut(s) 272, 564
BfmI CTRYAG 1 cut(s) 688
BisI GCNGC 4 cut(s) 108, 163, 621, 624
BlsI GCNGC 4 cut(s) 109, 164, 622, 625
BmcAI AGTACT 1 cut(s) 404
Bme1390I CCNGG 5 cut(s) 52, 133, 156, 446, 539
Bme18I GGWCC 1 cut(s) 535
BmeT110I CYCGRG 1 cut(s) 111
BmgT120I GGNCC 2 cut(s) 535, 693
BmiI GGNNCC 2 cut(s) 590, 643
BmrFI CCNGG 5 cut(s) 52, 133, 156, 446, 539
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 248
BpuMI CCSGG 3 cut(s) 133, 156, 446
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 5 cut(s) 19, 45, 132, 154, 596
BsaWI WCCGGW 1 cut(s) 293
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 451
BseAI TCCGGA 1 cut(s) 293
BseBI CCWGG 2 cut(s) 52, 539
BseDI CCNNGG 5 cut(s) 19, 45, 132, 154, 596
BseGI GGATG 1 cut(s) 592
BseLI CCNNNNNNNGG 2 cut(s) 51, 451
BseMII CTCAG 2 cut(s) 77, 369
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 3 cut(s) 94, 607, 610
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 3 cut(s) 50, 162, 695
BsiHKAI GWGCWC 1 cut(s) 301
BsiHKCI CYCGRG 1 cut(s) 111
BsiSI CCGG 4 cut(s) 132, 156, 294, 446
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 51, 451
BsmAI GTCTC 4 cut(s) 85, 108, 184, 273
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 3 cut(s) 50, 162, 695
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 71, 301
Bsp13I TCCGGA 1 cut(s) 293
Bsp143I GATC 3 cut(s) 198, 460, 675
BspACI CCGC 2 cut(s) 163, 583
BspANI GGCC 3 cut(s) 50, 162, 695
BspCNI CTCAG 2 cut(s) 76, 370
BspEI TCCGGA 1 cut(s) 293
BspLI GGNNCC 2 cut(s) 590, 643
BspMAI CTGCAG 1 cut(s) 692
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 184
BssECI CCNNGG 5 cut(s) 19, 45, 132, 154, 596
BssMI GATC 3 cut(s) 198, 460, 675
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 19, 45
Bst2UI CCWGG 2 cut(s) 52, 539
Bst4CI ACNGT 3 cut(s) 79, 119, 178
Bst6I CTCTTC 1 cut(s) 331
BstACI GRCGYC 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 63, 378
BstF5I GGATG 1 cut(s) 592
BstKTI GATC 3 cut(s) 201, 463, 678
BstMAI GTCTC 4 cut(s) 85, 108, 184, 273
BstMBI GATC 3 cut(s) 198, 460, 675
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstNI CCWGG 2 cut(s) 52, 539
BstNSI RCATGY 1 cut(s) 368
BstSCI CCNGG 5 cut(s) 50, 131, 154, 444, 537
BstSFI CTRYAG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 94, 607, 610
BstV2I GAAGAC 1 cut(s) 248
BsuRI GGCC 3 cut(s) 50, 162, 695
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 1 cut(s) 592
BtsI GCAGTG 2 cut(s) 319, 559
BtsIMutI CAGTG 5 cut(s) 71, 75, 124, 319, 559
Cac8I GCNNGC 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 535, 693
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 403, 580
CviAII CATG 1 cut(s) 365
CviQI GTAC 2 cut(s) 403, 580
DdeI CTNAG 2 cut(s) 63, 378
DpnI GATC 3 cut(s) 200, 462, 677
DpnII GATC 3 cut(s) 198, 460, 675
DraI TTTAAA 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 331
EarI CTCTTC 1 cut(s) 331
Ecl136II GAGCTC 1 cut(s) 299
Eco130I CCWWGG 2 cut(s) 19, 45
Eco24I GRGCYC 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 260
Eco88I CYCGRG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 50, 537
EcoT14I CCWWGG 2 cut(s) 19, 45
EcoT22I ATGCAT 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 19, 45
FaeI CATG 1 cut(s) 368
FaiI YATR 8 cut(s) 35, 95, 281, 346, 366, 389, 396, 498
FalI AAGNNNNNCTT 2 cut(s) 233, 265
FaqI GGGAC 1 cut(s) 326
FatI CATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 198
Fnu4HI GCNGC 4 cut(s) 108, 163, 621, 624
FokI GGATG 1 cut(s) 579
FriOI GRGCYC 1 cut(s) 301
Fsp4HI GCNGC 4 cut(s) 108, 163, 621, 624
FspBI CTAG 2 cut(s) 272, 564
GluI GCNGC 4 cut(s) 108, 163, 621, 624
HaeIII GGCC 3 cut(s) 50, 162, 695
HapII CCGG 4 cut(s) 132, 156, 294, 446
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 368
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 2 cut(s) 314, 511
HpaII CCGG 4 cut(s) 132, 156, 294, 446
HphI GGTGA 6 cut(s) 91, 118, 295, 520, 586, 643
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 3 cut(s) 193, 535, 597
Hpy188III TCNNGA 3 cut(s) 272, 294, 679
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 112, 340
HpyCH4III ACNGT 3 cut(s) 79, 119, 178
HpyCH4V TGCA 5 cut(s) 89, 218, 254, 368, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 2 cut(s) 63, 378
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 368
Kpn2I TCCGGA 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 198, 460, 675
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 3 cut(s) 296, 541, 549
Lsp1109I GCAGC 3 cut(s) 94, 607, 610
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 272, 564
MaeIII GTNAC 4 cut(s) 167, 283, 512, 554
MalI GATC 3 cut(s) 200, 462, 677
MboI GATC 3 cut(s) 198, 460, 675
MboII GAAGA 6 cut(s) 214, 253, 318, 580, 646, 694
MhlI GDGCHC 2 cut(s) 71, 301
MluCI AATT 2 cut(s) 502, 700
MlyI GAGTC 2 cut(s) 308, 520
MnlI CCTC 5 cut(s) 22, 152, 218, 268, 591
Mph1103I ATGCAT 1 cut(s) 220
MroI TCCGGA 1 cut(s) 293
MseI TTAA 3 cut(s) 354, 560, 703
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 4 cut(s) 132, 156, 294, 446
MspR9I CCNGG 5 cut(s) 52, 133, 156, 446, 539
Mva1269I GAATGC 1 cut(s) 218
MvaI CCWGG 2 cut(s) 52, 539
MwoI GCNNNNNNNGC 1 cut(s) 21
NciI CCSGG 3 cut(s) 133, 156, 446
NdeII GATC 3 cut(s) 198, 460, 675
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 590, 643
NmuCI GTSAC 4 cut(s) 167, 283, 512, 554
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 368
PaeI GCATGC 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 331
PctI GAATGC 1 cut(s) 218
PkrI GCNGC 4 cut(s) 109, 164, 622, 625
PleI GAGTC 2 cut(s) 308, 519
PpsI GAGTC 2 cut(s) 308, 519
Psp124BI GAGCTC 1 cut(s) 301
Psp6I CCWGG 2 cut(s) 50, 537
PspGI CCWGG 2 cut(s) 50, 537
PspN4I GGNNCC 2 cut(s) 590, 643
PspPI GGNCC 2 cut(s) 535, 693
PstI CTGCAG 1 cut(s) 692
RsaI GTAC 2 cut(s) 404, 581
RsaNI GTAC 2 cut(s) 403, 580
RseI CAYNNNNRTG 1 cut(s) 650
SacI GAGCTC 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 354, 560, 703
SatI GCNGC 4 cut(s) 108, 163, 621, 624
Sau3AI GATC 3 cut(s) 198, 460, 675
Sau96I GGNCC 2 cut(s) 535, 693
ScaI AGTACT 1 cut(s) 404
SchI GAGTC 2 cut(s) 308, 520
ScrFI CCNGG 5 cut(s) 52, 133, 156, 446, 539
SduI GDGCHC 2 cut(s) 71, 301
SetI ASST 6 cut(s) 33, 64, 104, 210, 301, 546
SfaNI GCATC 1 cut(s) 205
SfcI CTRYAG 1 cut(s) 688
SinI GGWCC 1 cut(s) 535
SmiMI CAYNNNNRTG 1 cut(s) 650
SphI GCATGC 1 cut(s) 368
Sse9I AATT 2 cut(s) 502, 700
SsiI CCGC 2 cut(s) 163, 583
SspMI CTAG 2 cut(s) 272, 564
SstI GAGCTC 1 cut(s) 301
StyD4I CCNGG 5 cut(s) 50, 131, 154, 444, 537
StyI CCWWGG 2 cut(s) 19, 45
TaaI ACNGT 3 cut(s) 79, 119, 178
TasI AATT 2 cut(s) 502, 700
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 165
Tru1I TTAA 3 cut(s) 354, 560, 703
Tru9I TTAA 3 cut(s) 354, 560, 703
TscAI CASTG 5 cut(s) 71, 82, 124, 326, 559
TseFI GTSAC 4 cut(s) 167, 283, 512, 554
TseI GCWGC 3 cut(s) 107, 620, 623
Tsp45I GTSAC 4 cut(s) 167, 283, 512, 554
TspGWI ACGGA 1 cut(s) 186
TspRI CASTG 5 cut(s) 71, 82, 124, 326, 559
VpaK11BI GGWCC 1 cut(s) 535
XapI RAATTY 1 cut(s) 502
XbaI TCTAGA 1 cut(s) 271
XceI RCATGY 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 652
XspI CTAG 2 cut(s) 272, 564
ZrmI AGTACT 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.