FvH4_4g18360

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013086
Physical Location & Seq
Forward (+)
22280416 .. 22281852
1437 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g18360.t1

Sequence Viewer

Length: 399 bp
ATGGGGAAAGAAATAGACAAGGAAGACGAGAGAAAAGAAGCAGCGATAGCATCGACGGCGGTGTTACGGCCCAATTTCAAGCCCAAAGGGCTTACACAAGAGCAGCTCTCCAAGTTTCAGGAGCTGCACCGGAAGCGTTTACAGATGAAGTCAAAGTCAAAGTTTGAAAAGAAACCAAAAGCTGGTACTGGAAAATCTAAGCGGAAAAACCACCATCCAAGAGTGTCGACAAATCATGAGTCAAGCATAAGTATTGAAGATTCAGCTGTTCCTAACTCTGACAGCCACAAAAAAGGAAGCTGTTCTATAGTACAGCAAGAGGATGCACCAAAGAAGCGCCAGAAGTTACATTGGGGGCTCGACACAAAGGAACGTTGGGAAAGGAAAGCAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.19

Weight (kDa)

10.04

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16160
fragaria_vesca FvH4_4g18360
malus_domestica MD09G1254600.v1.1
prunus_persica Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1
pyrus_communis pycom09g17030
rosa_chinensis RchiOBHm_Chr4g0422841
rosa_laevigata RLG00000007601
rosa_multiflora Rmu_sc0000830.1_g000043 Rmu_sc0035208.1_g000001
rosa_roxburghii Rroxscaffold_5G00364700
rosa_rugosa Rorug04G0181800
rosa_samantha Rh4AG242100 Rh4BG245700 Rh4CG256000 Rh4DG240700
rosa_wichuraiana Rw4G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 227
AciI CCGC 2 cut(s) 59, 202
AclI AACGTT 1 cut(s) 373
AfaI GTAC 2 cut(s) 187, 312
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 79, 167, 257
AluBI AGCT 5 cut(s) 106, 124, 182, 266, 300
AluI AGCT 5 cut(s) 106, 124, 182, 266, 300
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 1 cut(s) 68
ApeKI GCWGC 3 cut(s) 41, 103, 124
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 69
BanII GRGCYC 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 53, 111, 115
BccI CCATC 1 cut(s) 222
BceAI ACGGC 2 cut(s) 72, 83
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 340
BglI GCCNNNNNGGC 1 cut(s) 88
BisI GCNGC 3 cut(s) 42, 104, 125
BlsI GCNGC 3 cut(s) 43, 105, 126
BmgT120I GGNCC 1 cut(s) 69
BmsI GCATC 2 cut(s) 59, 313
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BsaWI WCCGGW 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 2 cut(s) 214, 328
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 3 cut(s) 53, 111, 115
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 182
BsnI GGCC 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 360
BspACI CCGC 2 cut(s) 59, 202
BspANI GGCC 1 cut(s) 70
BspHI TCATGA 1 cut(s) 235
BsrI ACTGG 1 cut(s) 193
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 2 cut(s) 214, 328
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 47, 56, 88, 133
BstNSI RCATGY 1 cut(s) 397
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 53, 111, 115
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 214, 328
CaiI CAGNNNCTG 1 cut(s) 124
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 186, 311
CviAII CATG 2 cut(s) 236, 394
CviQI GTAC 2 cut(s) 186, 311
DdeI CTNAG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 2 cut(s) 239, 397
FaiI YATR 4 cut(s) 237, 248, 308, 395
FatI CATG 2 cut(s) 235, 393
FblI GTMKAC 1 cut(s) 227
Fnu4HI GCNGC 3 cut(s) 42, 104, 125
FokI GGATG 2 cut(s) 201, 335
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 3 cut(s) 42, 104, 125
GlaI GCGC 1 cut(s) 338
GluI GCNGC 3 cut(s) 42, 104, 125
HaeII RGCGCY 1 cut(s) 340
HaeIII GGCC 1 cut(s) 70
HapII CCGG 1 cut(s) 130
HhaI GCGC 1 cut(s) 339
Hin1II CATG 2 cut(s) 239, 397
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 2 cut(s) 239, 260
HpaII CCGG 1 cut(s) 130
Hpy166II GTNNAC 2 cut(s) 140, 228
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 119, 236
Hpy8I GTNNAC 2 cut(s) 140, 228
Hpy99I CGWCG 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 127, 326
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 56, 88, 133
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 2 cut(s) 239, 397
HspAI GCGC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 5 cut(s) 104, 143, 168, 174, 353
Lsp1109I GCAGC 3 cut(s) 53, 111, 115
LweI GCATC 2 cut(s) 59, 313
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 2 cut(s) 63, 345
MboII GAAGA 2 cut(s) 35, 269
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 1 cut(s) 313
MroXI GAANNNNTTC 1 cut(s) 301
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 130
MwoI GCNNNNNNNGC 4 cut(s) 47, 56, 88, 133
NlaIII CATG 2 cut(s) 239, 397
NspI RCATGY 1 cut(s) 397
PagI TCATGA 1 cut(s) 235
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 3 cut(s) 43, 105, 126
PleI GAGTC 1 cut(s) 247
PpsI GAGTC 1 cut(s) 247
PscI ACATGT 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 373
PspPI GGNCC 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 187, 312
RsaNI GTAC 2 cut(s) 186, 311
SalI GTCGAC 1 cut(s) 226
SatI GCNGC 3 cut(s) 42, 104, 125
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 360
SetI ASST 6 cut(s) 108, 126, 184, 268, 302, 376
SfaNI GCATC 2 cut(s) 59, 313
SfcI CTRYAG 1 cut(s) 306
Sse9I AATT 1 cut(s) 73
SsiI CCGC 2 cut(s) 59, 202
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 53, 227, 360
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 1 cut(s) 260
TseI GCWGC 3 cut(s) 41, 103, 124
TspDTI ATGAA 1 cut(s) 161
Van91I CCANNNNNTGG 1 cut(s) 182
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.