Rmu_sc0035208.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035208.1
Physical Location & Seq
Reverse (-)
1558 .. 2631
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035208.1_g000001.1.cds

Sequence Viewer

Length: 405 bp
atggggaaagaagtagacaaggaagaggagagaaaagaagcagcgatagcatcaacagcagttttacaacccaatttcaagcccagaggcataacccaagaccagctctccaagtttcaggagctgcacaggaagcgtttacagataaagtcaaaatcgaagtttgaaaagaaaccaaaagctggtactggaaaatctcactctccctgcaagaaccacaatccaagagactcgacaaatgaagattcaagcgtaagtgttgaagattcagctgttcctaactctgagggccacgataatggaatcagttctttattacagcaagaggatgcaccaaagaagcgccagaaattacattgggggctcgacacaaaggaacgttgggaaaggaaagcaaacatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.22

Weight (kDa)

9.46

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013086)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 15
AclI AACGTT 1 cut(s) 379
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 399
AgsI TTSAA 4 cut(s) 79, 167, 249, 263
AluBI AGCT 4 cut(s) 106, 124, 182, 272
AluI AGCT 4 cut(s) 106, 124, 182, 272
Alw26I GTCTC 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 41, 124
Asp700I GAANNNNTTC 1 cut(s) 307
AspLEI GCGC 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 366
BbvI GCAGC 2 cut(s) 53, 111
BcoDI GTCTC 1 cut(s) 222
BfoI RGCGCY 1 cut(s) 346
BisI GCNGC 2 cut(s) 42, 125
BlsI GCNGC 2 cut(s) 43, 126
BmgT120I GGNCC 1 cut(s) 289
BmsI GCATC 2 cut(s) 59, 319
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 53, 111
BsgI GTGCAG 1 cut(s) 110
BshFI GGCC 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 222
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 366
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 285
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 346
BstHHI GCGC 1 cut(s) 345
BstMAI GTCTC 1 cut(s) 222
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 133
BstNSI RCATGY 1 cut(s) 403
BstV1I GCAGC 2 cut(s) 53, 111
BstXI CCANNNNNNTGG 1 cut(s) 299
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 334
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 345
Cfr13I GGNCC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 400
CviJI RGCY 7 cut(s) 82, 106, 124, 182, 272, 291, 364
CviKI_1 RGCY 7 cut(s) 82, 106, 124, 182, 272, 291, 364
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 285
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 366
FaeI CATG 1 cut(s) 403
FaiI YATR 2 cut(s) 92, 401
FatI CATG 1 cut(s) 399
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 42, 125
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 1 cut(s) 366
Fsp4HI GCNGC 2 cut(s) 42, 125
GlaI GCGC 1 cut(s) 344
GluI GCNGC 2 cut(s) 42, 125
HaeII RGCGCY 1 cut(s) 346
HaeIII GGCC 1 cut(s) 291
HhaI GCGC 1 cut(s) 345
Hin1II CATG 1 cut(s) 403
Hin6I GCGC 1 cut(s) 343
HinP1I GCGC 1 cut(s) 343
HinfI GANTC 4 cut(s) 230, 245, 266, 303
Hpy166II GTNNAC 2 cut(s) 16, 140
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 16, 140
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 3 cut(s) 127, 210, 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 133
HpyF3I CTNAG 1 cut(s) 285
HpySE526I ACGT 1 cut(s) 379
Hsp92II CATG 1 cut(s) 403
HspAI GCGC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 97, 104, 115, 116, 168, 174, 220, 359
Lsp1109I GCAGC 2 cut(s) 53, 111
LweI GCATC 2 cut(s) 59, 319
MaeII ACGT 1 cut(s) 379
MboII GAAGA 3 cut(s) 35, 254, 275
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 2 cut(s) 73, 350
MlyI GAGTC 1 cut(s) 224
MnlI CCTC 4 cut(s) 19, 80, 280, 319
MroXI GAANNNNTTC 1 cut(s) 307
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 133
NlaIII CATG 1 cut(s) 403
NspI RCATGY 1 cut(s) 403
PciI ACATGT 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 245, 266, 303
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 43, 126
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PscI ACATGT 1 cut(s) 399
Psp1406I AACGTT 1 cut(s) 379
PspPI GGNCC 1 cut(s) 289
PstNI CAGNNNCTG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 297
SatI GCNGC 2 cut(s) 42, 125
Sau96I GGNCC 1 cut(s) 289
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 366
SetI ASST 5 cut(s) 108, 126, 184, 274, 382
SfaNI GCATC 2 cut(s) 59, 319
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 2 cut(s) 73, 350
TaiI ACGT 1 cut(s) 382
TaqI TCGA 3 cut(s) 158, 233, 366
TasI AATT 2 cut(s) 73, 350
TfiI GAWTC 3 cut(s) 245, 266, 303
TseI GCWGC 2 cut(s) 41, 124
TspDTI ATGAA 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 182
XceI RCATGY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.