RLG00000007601

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013086
Physical Location & Seq
Reverse (-)
18874136 .. 18875259
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007601

Sequence Viewer

Length: 399 bp
ATGGGGAAAGAAGTAGACAAGGAAGAGGAGAGAAAAGAAGCAGCGATAGCATCAACAGCAGTTTTACAGCCCAATTTCAAGCCCAGAGGCATAACCCAAGACCAGCTCTCCAAGTTTCAGGAGCTGCACAGGAAGCGTTTACAGATCAAGTCAAAATCAAAGTTTGAAAAGAAACCAAAAGCTGGTACTGGAAAATCTCGCCTTAAGAACCACAATGCAAGAGACTCGACAAATCAAGATTCAAGCATAAGTGGTGAAGATTCAGCTGTTCCTATCCCTGAGAGCCACAATAATGGAAGCAGTTCTTTATTACAGCAAGAGGATGCACCAAAGAAGCGCCAGAAGTTACATTGGGGGCTCGACACAAAGGAACGTTGGGAAAGGAAAGCAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.02

Weight (kDa)

9.86

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16160
fragaria_vesca FvH4_4g18360
malus_domestica MD09G1254600.v1.1
prunus_persica Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1
pyrus_communis pycom09g17030
rosa_chinensis RchiOBHm_Chr4g0422841
rosa_laevigata RLG00000007601
rosa_multiflora Rmu_sc0000830.1_g000043 Rmu_sc0035208.1_g000001
rosa_roxburghii Rroxscaffold_5G00364700
rosa_rugosa Rorug04G0181800
rosa_samantha Rh4AG242100 Rh4BG245700 Rh4CG256000 Rh4DG240700
rosa_wichuraiana Rw4G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 15
AclI AACGTT 1 cut(s) 373
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 182
AflII CTTAAG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 3 cut(s) 79, 167, 243
AluBI AGCT 4 cut(s) 106, 124, 182, 266
AluI AGCT 4 cut(s) 106, 124, 182, 266
Alw26I GTCTC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 41, 124
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 53, 111
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcoDI GTCTC 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 340
BfrI CTTAAG 1 cut(s) 203
BisI GCNGC 2 cut(s) 42, 125
BlsI GCNGC 2 cut(s) 43, 126
BmsI GCATC 2 cut(s) 59, 313
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 53, 111
BsgI GTGCAG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 271
BspTI CTTAAG 1 cut(s) 203
BsrI ACTGG 1 cut(s) 193
BssMI GATC 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 133
BstNSI RCATGY 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 53, 111
BstXI CCANNNNNNTGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 394
CviJI RGCY 8 cut(s) 70, 82, 106, 124, 182, 266, 285, 358
CviKI_1 RGCY 8 cut(s) 70, 82, 106, 124, 182, 266, 285, 358
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 360
FaeI CATG 1 cut(s) 397
FaiI YATR 3 cut(s) 92, 248, 395
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FatI CATG 1 cut(s) 393
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 42, 125
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 42, 125
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 42, 125
HaeII RGCGCY 1 cut(s) 340
HhaI GCGC 1 cut(s) 339
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 3 cut(s) 224, 239, 260
HphI GGTGA 1 cut(s) 266
Hpy166II GTNNAC 2 cut(s) 16, 140
Hpy188III TCNNGA 2 cut(s) 119, 236
Hpy8I GTNNAC 2 cut(s) 16, 140
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 3 cut(s) 127, 218, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 133
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 97, 104, 115, 116, 168, 174, 291, 353
Lsp1109I GCAGC 2 cut(s) 53, 111
LweI GCATC 2 cut(s) 59, 313
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 345
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 35, 269
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 3 cut(s) 19, 80, 313
MroXI GAANNNNTTC 1 cut(s) 301
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 203
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 133
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 397
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 239, 260
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 43, 126
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PscI ACATGT 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 291
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 2 cut(s) 42, 125
Sau3AI GATC 1 cut(s) 144
SchI GAGTC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 360
SetI ASST 5 cut(s) 108, 126, 184, 268, 376
SfaNI GCATC 2 cut(s) 59, 313
SmiMI CAYNNNNRTG 1 cut(s) 291
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 73
TaiI ACGT 1 cut(s) 376
TaqI TCGA 2 cut(s) 227, 360
TasI AATT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 239, 260
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 2 cut(s) 41, 124
Van91I CCANNNNNTGG 1 cut(s) 182
Vha464I CTTAAG 1 cut(s) 203
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.