Rh4BG245700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
41268189 .. 41269280
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG245700.1

Sequence Viewer

Length: 399 bp
ATGGGGAAAGAAGTAGACAAGGAAGAGGAGAGAAAAGAAGCAGCGATAGCATCAACAGCAGTTTTACAGCCCAATTTCAAGCCCAGAGGCATAACCCAAGACCAGCTCTCCAAGTTTCAGGAGCTGCACAGGAAGCGTTTACAGATAAAGTCAAAATCGAAGTTTGAAAAGAAACCAAAAGCTGGTACTGGAAAATCTCACCGCAAGAACCACAATCCAAGAGACTCGACAAATGAAGATTCAAGCGTAAGTGTTGAAGATTCAGCTGTTCCTAACTCTGAGAGCCACAATAATGGAAGCAGTTCTTTATTACAGCAAGAGGATGCACCAAAGAAGCGCCAGAAGTTACATTGGGGACTCGACACAAAAGAACGTTGGGAAAGGAAAGCAAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.09

Weight (kDa)

9.76

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013086)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 202
AclI AACGTT 1 cut(s) 373
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 79, 167, 243, 257
AluBI AGCT 4 cut(s) 106, 124, 182, 266
AluI AGCT 4 cut(s) 106, 124, 182, 266
Alw26I GTCTC 1 cut(s) 216
AlwNI CAGNNNCTG 1 cut(s) 124
ApeKI GCWGC 2 cut(s) 41, 124
Asp700I GAANNNNTTC 1 cut(s) 301
AspLEI GCGC 1 cut(s) 339
AsuHPI GGTGA 1 cut(s) 191
BbvI GCAGC 2 cut(s) 53, 111
BcoDI GTCTC 1 cut(s) 216
BfoI RGCGCY 1 cut(s) 340
BisI GCNGC 2 cut(s) 42, 125
BlsI GCNGC 2 cut(s) 43, 126
BmsI GCATC 2 cut(s) 59, 313
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 193
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 53, 111
BsgI GTGCAG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 182
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 369
BspACI CCGC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 271
BsrI ACTGG 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 340
BstHHI GCGC 1 cut(s) 339
BstMAI GTCTC 1 cut(s) 216
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 133
BstNSI RCATGY 1 cut(s) 397
BstV1I GCAGC 2 cut(s) 53, 111
BstXI CCANNNNNNTGG 1 cut(s) 293
BtsCI GGATG 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 394
CviJI RGCY 7 cut(s) 70, 82, 106, 124, 182, 266, 285
CviKI_1 RGCY 7 cut(s) 70, 82, 106, 124, 182, 266, 285
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
FaeI CATG 1 cut(s) 397
FaiI YATR 2 cut(s) 92, 395
FalI AAGNNNNNCTT 2 cut(s) 289, 321
FaqI GGGAC 1 cut(s) 369
FatI CATG 1 cut(s) 393
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 2 cut(s) 42, 125
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 2 cut(s) 42, 125
GlaI GCGC 1 cut(s) 338
GluI GCNGC 2 cut(s) 42, 125
HaeII RGCGCY 1 cut(s) 340
HhaI GCGC 1 cut(s) 339
Hin1II CATG 1 cut(s) 397
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 4 cut(s) 224, 239, 260, 357
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 16, 140
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 16, 140
HpyCH4IV ACGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 127, 326
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 133
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 373
Hsp92II CATG 1 cut(s) 397
HspAI GCGC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 97, 104, 115, 116, 168, 174, 353
Lsp1109I GCAGC 2 cut(s) 53, 111
LweI GCATC 2 cut(s) 59, 313
MaeII ACGT 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 345
MboII GAAGA 3 cut(s) 35, 248, 269
MluCI AATT 1 cut(s) 73
MlyI GAGTC 2 cut(s) 218, 351
MnlI CCTC 3 cut(s) 19, 80, 313
MroXI GAANNNNTTC 1 cut(s) 301
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 266
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 133
NlaIII CATG 1 cut(s) 397
NspI RCATGY 1 cut(s) 397
PciI ACATGT 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 301
PfeI GAWTC 2 cut(s) 239, 260
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 2 cut(s) 43, 126
PleI GAGTC 2 cut(s) 218, 351
PpsI GAGTC 2 cut(s) 218, 351
PscI ACATGT 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 2 cut(s) 42, 125
SchI GAGTC 2 cut(s) 218, 351
SetI ASST 5 cut(s) 108, 126, 184, 268, 376
SfaNI GCATC 2 cut(s) 59, 313
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 202
TaiI ACGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 158, 227, 360
TasI AATT 1 cut(s) 73
TfiI GAWTC 2 cut(s) 239, 260
TseI GCWGC 2 cut(s) 41, 124
TspDTI ATGAA 1 cut(s) 249
Van91I CCANNNNNTGG 1 cut(s) 182
XceI RCATGY 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.