pycom09g17030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013086
Physical Location & Seq
Forward (+)
17466258 .. 17467817
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g17030.3

Sequence Viewer

Length: 387 bp
ATGGGAAAGGAAGGAGACAAGGAAGACGAGAGAAAGGAAGCAGCAATCGCATCCACGCCGTGTCTGCAGCCCAATTACAAGCCCAAATCCCTCACCCAAACCCAGCTATCCAAGTTCCAGGAGCTGCACCAGAGGAGGTTACAGATCAAATCAAAATCAAAGATGGGAAAGAAACCAAAAGATAGTAAAGGAAAATCTCACAGCATAGACCTGACTGCTAGAGATACTGCAAACCAAGATTCAGTCATAACACTTGAAACTTCAACCGTCTGTGACTCTGAGAACCACAAGAATGAAACCAGTTCTGTTGTACAGCATGAGGATATAGCAGTCCGGGCTCAAAAGAAGAGGCACAAGTTACATTGGGGGTATGATATGCATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.54

Weight (kDa)

9.34

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G16160
fragaria_vesca FvH4_4g18360
malus_domestica MD09G1254600.v1.1
prunus_persica Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1 Prupe.3G144700_v2.0.a1
pyrus_communis pycom09g17030
rosa_chinensis RchiOBHm_Chr4g0422841
rosa_laevigata RLG00000007601
rosa_multiflora Rmu_sc0000830.1_g000043 Rmu_sc0035208.1_g000001
rosa_roxburghii Rroxscaffold_5G00364700
rosa_rugosa Rorug04G0181800
rosa_samantha Rh4AG242100 Rh4BG245700 Rh4CG256000 Rh4DG240700
rosa_wichuraiana Rw4G020850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 60
AfaI GTAC 1 cut(s) 312
AgsI TTSAA 2 cut(s) 257, 264
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 106, 124
AluI AGCT 2 cut(s) 106, 124
Alw26I GTCTC 1 cut(s) 9
AlwNI CAGNNNCTG 1 cut(s) 124
ApeKI GCWGC 3 cut(s) 41, 67, 124
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 85
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 3 cut(s) 53, 79, 111
BccI CCATC 1 cut(s) 157
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 65
BisI GCNGC 3 cut(s) 42, 68, 125
BlsI GCNGC 3 cut(s) 43, 69, 126
Bme1390I CCNGG 2 cut(s) 119, 335
BmrFI CCNGG 2 cut(s) 119, 335
BmsI GCATC 1 cut(s) 59
BpiI GAAGAC 1 cut(s) 30
BpuMI CCSGG 1 cut(s) 335
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 50
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 148
BseXI GCAGC 3 cut(s) 53, 79, 111
BseYI CCCAGC 1 cut(s) 102
BsgI GTGCAG 1 cut(s) 110
BsiSI CCGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 340
Bsp1407I TGTACA 1 cut(s) 310
Bsp143I GATC 1 cut(s) 144
BspCNI CTCAG 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 310
BsrI ACTGG 1 cut(s) 300
BssMI GATC 1 cut(s) 144
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 310
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 1 cut(s) 147
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 47, 64, 335
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 117, 333
BstSFI CTRYAG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 53, 79, 111
BstV2I GAAGAC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 381
CaiI CAGNNNCTG 1 cut(s) 124
Csp6I GTAC 1 cut(s) 311
CviAII CATG 2 cut(s) 317, 380
CviJI RGCY 5 cut(s) 70, 82, 106, 124, 338
CviKI_1 RGCY 5 cut(s) 70, 82, 106, 124, 338
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
DraIII CACNNNGTG 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco24I GRGCYC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 340
FaeI CATG 2 cut(s) 320, 383
FaiI YATR 7 cut(s) 206, 248, 318, 326, 372, 377, 381
FatI CATG 2 cut(s) 316, 379
Fnu4HI GCNGC 3 cut(s) 42, 68, 125
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 3 cut(s) 42, 68, 125
FspBI CTAG 1 cut(s) 219
GluI GCNGC 3 cut(s) 42, 68, 125
GsaI CCCAGC 1 cut(s) 106
HapII CCGG 1 cut(s) 334
Hin1II CATG 2 cut(s) 320, 383
HinfI GANTC 2 cut(s) 239, 275
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 280
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 67, 127, 230, 379
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 64, 335
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 2 cut(s) 320, 383
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 7 cut(s) 104, 116, 131, 143, 224, 313, 347
Lsp1109I GCAGC 3 cut(s) 53, 79, 111
LweI GCATC 1 cut(s) 59
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 3 cut(s) 138, 272, 357
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MboII GAAGA 2 cut(s) 35, 358
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 269
MnlI CCTC 5 cut(s) 101, 126, 129, 313, 342
Mph1103I ATGCAT 1 cut(s) 381
MslI CAYNNNNRTG 1 cut(s) 291
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 119, 335
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 47, 64, 335
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 144
NlaIII CATG 2 cut(s) 320, 383
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 1 cut(s) 381
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 239
PfoI TCCNGGA 1 cut(s) 117
PkrI GCNGC 3 cut(s) 43, 69, 126
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 117
PstI CTGCAG 1 cut(s) 69
PstNI CAGNNNCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 291
SatI GCNGC 3 cut(s) 42, 68, 125
Sau3AI GATC 1 cut(s) 144
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 2 cut(s) 119, 335
SduI GDGCHC 1 cut(s) 340
SetI ASST 4 cut(s) 108, 126, 140, 213
SfaNI GCATC 1 cut(s) 59
SfcI CTRYAG 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 291
SphI GCATGC 1 cut(s) 383
Sse9I AATT 1 cut(s) 73
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 117, 333
TaaI ACNGT 1 cut(s) 268
TasI AATT 1 cut(s) 73
TatI WGTACW 1 cut(s) 310
TfiI GAWTC 1 cut(s) 239
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 41, 67, 124
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 309
XceI RCATGY 1 cut(s) 383
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.