FvH4_4g19250

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016671
Physical Location & Seq
Forward (+)
22942889 .. 22944926
2038 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19250.t1

Sequence Viewer

Length: 528 bp
ATGGAAAGAACTCGAAGCTTCTTCTTCCCAGTTCTTGTACTCATTTCATTCCTAGTGATGTCGACCTCAACTGTGGCGTCATCGCGAGCTTCCAAGCTGGAGACAACCTCAAAGGACCAGATCGAATGCACAATGTGCGCCGCATGCGAGAACCCATGTTACCAAGTCCCCTCTCCGCCGCCACCTCCGCCGTCTCGTCCACCGCCGTCTTCCTCCGCCAACTGCCCACCTCCGCCTAGCTCCGGCACGACCTACTACTCTCCCCCGCCGCCTTCCCAGCCCACTTCCACTTACTACCCGCCGCCGGCCGGTGGCGGCGGCGGAGGAGGAGGCGCGTTTTACCCGCCGCCGAATGGCCAGAACTACCCGGTGCCGCCGCCGCCGAACCCAATTGTGCCCTACTTCCCGTTTTACTATCACACTCCTCCTCCGGGGTCTATACCATCCAGCTCGGTTCAGCTCATCACTAGCTACTCTATAGTGATTTACAGTTTCATTAGTGTTGCTCTGTTTTCTCGTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.61

Weight (kDa)

8.28

Isoelectric Point (pI)

92.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 62
AccII CGCG 2 cut(s) 85, 335
AcoI YGGCCR 2 cut(s) 306, 355
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 1 cut(s) 135
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 6 cut(s) 242, 304, 308, 311, 353, 431
AluBI AGCT 7 cut(s) 18, 89, 97, 240, 450, 460, 471
AluI AGCT 7 cut(s) 18, 89, 97, 240, 450, 460, 471
Alw26I GTCTC 2 cut(s) 95, 198
AoxI GGCC 2 cut(s) 306, 355
AspLEI GCGC 2 cut(s) 140, 335
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 2 cut(s) 368, 432
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 370
BbsI GAAGAC 1 cut(s) 201
BccI CCATC 1 cut(s) 451
BceAI ACGGC 2 cut(s) 175, 190
BcnI CCSGG 2 cut(s) 368, 432
BcoDI GTCTC 2 cut(s) 95, 198
BfaI CTAG 3 cut(s) 53, 237, 468
BfmI CTRYAG 1 cut(s) 477
Bme1390I CCNGG 2 cut(s) 368, 432
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 368, 432
BmrI ACTGGG 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 92, 124
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 368, 432
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 6 cut(s) 242, 304, 308, 311, 353, 431
Bse118I RCCGGY 2 cut(s) 304, 308
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 6 cut(s) 242, 304, 308, 311, 353, 431
BseNI ACTGG 1 cut(s) 29
BseRI GAGGAG 4 cut(s) 339, 342, 414, 417
BseSI GKGCMC 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 306
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 2 cut(s) 85, 335
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 308, 357
BshNI GGYRCC 1 cut(s) 370
BsiEI CGRYCG 1 cut(s) 309
BsiSI CCGG 5 cut(s) 243, 305, 309, 368, 431
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 6 cut(s) 242, 304, 308, 311, 353, 431
BsmAI GTCTC 2 cut(s) 95, 198
BsmBI CGTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 2 cut(s) 308, 357
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 1 cut(s) 120
Bsp68I TCGCGA 1 cut(s) 85
BspANI GGCC 2 cut(s) 308, 357
BspFNI CGCG 2 cut(s) 85, 335
BspLI GGNNCC 1 cut(s) 372
BspT107I GGYRCC 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 304, 308
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 2 cut(s) 304, 308
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 1 cut(s) 120
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 73, 491
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 135
BstC8I GCNNGC 3 cut(s) 87, 145, 306
BstF5I GGATG 1 cut(s) 443
BstFNI CGCG 2 cut(s) 85, 335
BstHHI GCGC 2 cut(s) 140, 335
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 2 cut(s) 95, 198
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 5 cut(s) 135, 144, 187, 277, 379
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 366, 430
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 2 cut(s) 85, 335
BstV2I GAAGAC 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 306
BsuRI GGCC 2 cut(s) 308, 357
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 1 cut(s) 443
BtuMI TCGCGA 1 cut(s) 85
Cac8I GCNNGC 3 cut(s) 87, 145, 306
CfoI GCGC 2 cut(s) 140, 335
Cfr10I RCCGGY 2 cut(s) 304, 308
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 38
CviAII CATG 2 cut(s) 144, 156
CviQI GTAC 1 cut(s) 38
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraIII CACNNNGTG 1 cut(s) 135
EaeI YGGCCR 2 cut(s) 306, 355
EagI CGGCCG 1 cut(s) 306
EciI GGCGGA 5 cut(s) 165, 177, 205, 222, 336
EclXI CGGCCG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 115
Eco52I CGGCCG 1 cut(s) 306
Esp3I CGTCTC 1 cut(s) 198
FaeI CATG 2 cut(s) 147, 159
FaiI YATR 4 cut(s) 145, 157, 440, 479
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 143, 155
FauI CCCGC 3 cut(s) 273, 306, 351
FblI GTMKAC 1 cut(s) 62
FokI GGATG 1 cut(s) 430
FspBI CTAG 3 cut(s) 53, 237, 468
GlaI GCGC 2 cut(s) 139, 334
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 308, 357
HapII CCGG 5 cut(s) 243, 305, 309, 368, 431
HgaI GACGC 1 cut(s) 66
HhaI GCGC 2 cut(s) 140, 335
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 2 cut(s) 147, 159
Hin6I GCGC 2 cut(s) 138, 333
HinP1I GCGC 2 cut(s) 138, 333
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 16
HpaII CCGG 5 cut(s) 243, 305, 309, 368, 431
Hpy166II GTNNAC 2 cut(s) 63, 200
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 2 cut(s) 63, 200
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 2 cut(s) 73, 491
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 5 cut(s) 135, 144, 187, 277, 379
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 2 cut(s) 147, 159
HspAI GCGC 2 cut(s) 138, 333
KroI GCCGGC 1 cut(s) 304
KroNI GCCGGC 1 cut(s) 306
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 1 cut(s) 245
MaeI CTAG 3 cut(s) 53, 237, 468
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 3 cut(s) 13, 16, 201
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 1 cut(s) 390
MluNI TGGCCA 1 cut(s) 357
Mox20I TGGCCA 1 cut(s) 357
MroNI GCCGGC 1 cut(s) 304
MscI TGGCCA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 5 cut(s) 243, 305, 309, 368, 431
MspR9I CCNGG 2 cut(s) 368, 432
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 131
MvnI CGCG 2 cut(s) 85, 335
MwoI GCNNNNNNNGC 5 cut(s) 135, 144, 187, 277, 379
NaeI GCCGGC 1 cut(s) 306
NciI CCSGG 2 cut(s) 368, 432
NdeII GATC 1 cut(s) 120
NgoMIV GCCGGC 1 cut(s) 304
NlaIII CATG 2 cut(s) 147, 159
NlaIV GGNNCC 1 cut(s) 372
NruI TCGCGA 1 cut(s) 85
NspI RCATGY 1 cut(s) 147
PaeI GCATGC 1 cut(s) 147
PctI GAATGC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 276
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 1 cut(s) 115
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
RruI TCGCGA 1 cut(s) 85
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
SalI GTCGAC 1 cut(s) 61
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 368, 432
SduI GDGCHC 1 cut(s) 399
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 1 cut(s) 115
SphI GCATGC 1 cut(s) 147
Sse9I AATT 1 cut(s) 390
SspMI CTAG 3 cut(s) 53, 237, 468
StyD4I CCNGG 2 cut(s) 366, 430
TaaI ACNGT 2 cut(s) 73, 491
TaqI TCGA 3 cut(s) 13, 62, 123
TasI AATT 1 cut(s) 390
TatI WGTACW 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 36, 484
VpaK11BI GGWCC 1 cut(s) 115
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 62
XspI CTAG 3 cut(s) 53, 237, 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.