RLG00000007487

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0016671
Physical Location & Seq
Reverse (-)
17438372 .. 17537643
99272 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007487

Sequence Viewer

Length: 546 bp
ATGGAAAGAGTTCGAAGATTCTCACTTCTTGTTCTCATTTCGTTCCTAGTCATGATCTCCACTCCGACTGTGTCGTCGTCGCGAGCTTCGAAGCCGGAGACAACCTCAAAGGACCAGATCGAATGCACAATGTGCGCCGCATGCGAAAACCCATGCTACCAAGTCCCGTCGCCACCGCCACCTTCGCCTCCCCCACCGTCAAAGCCTCCGCCATCTTCCTCTTCCTCATCCTCAACCATCTGCCCACCGCCTCCGGCACAACCTAGCTCCGGCACTCCCTACAACTCTCCCCCGCCGCCTTCCCAGCCCATTTACACTTACTACCCGCCGCCGGCGGGAGGCGGCGGAGGAGGCGCGTTTTATCCGCCGCCGAATGGCCAGAACTATCCGGGGCCTCCGCCGCCGAACCCAATTGTGCCCTACTTCCCGTTTTACTATCACACCCCTCCTCCCGGGTCTATATCATCCAGCTCGGTTCTGCTCACTAGCTACTCGATAATAATTTACAGTTTCATTAGTGTTGCTCTGTTTTCTCGTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

19.19

Weight (kDa)

8.61

Isoelectric Point (pI)

92.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 73
AccII CGCG 2 cut(s) 82, 356
AcoI YGGCCR 1 cut(s) 376
AdeI CACNNNGTG 1 cut(s) 132
AfiI CCNNNNNNNGG 6 cut(s) 269, 331, 335, 338, 374, 452
AluBI AGCT 4 cut(s) 86, 267, 471, 489
AluI AGCT 4 cut(s) 86, 267, 471, 489
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 2 cut(s) 376, 392
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 2 cut(s) 137, 356
AspS9I GGNCC 2 cut(s) 112, 392
AsuC2I CCSGG 3 cut(s) 390, 453, 454
AsuII TTCGAA 2 cut(s) 13, 89
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 420
BalI TGGCCA 1 cut(s) 378
BccI CCATC 2 cut(s) 220, 245
BcnI CCSGG 3 cut(s) 390, 453, 454
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 3 cut(s) 47, 264, 486
BisI GCNGC 6 cut(s) 138, 296, 329, 343, 368, 401
BlsI GCNGC 6 cut(s) 139, 297, 330, 344, 369, 402
Bme1390I CCNGG 3 cut(s) 390, 453, 454
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 112, 392
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 390, 453, 454
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 2 cut(s) 13, 89
BpuMI CCSGG 3 cut(s) 390, 453, 454
BsaJI CCNNGG 2 cut(s) 389, 452
BsaXI ACNNNNNCTCC 2 cut(s) 433, 463
Bsc4I CCNNNNNNNGG 6 cut(s) 269, 331, 335, 338, 374, 452
Bse118I RCCGGY 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 389, 452
BseGI GGATG 2 cut(s) 227, 464
BseLI CCNNNNNNNGG 6 cut(s) 269, 331, 335, 338, 374, 452
BseRI GAGGAG 2 cut(s) 363, 438
BseSI GKGCMC 1 cut(s) 420
BseYI CCCAGC 1 cut(s) 303
Bsh1236I CGCG 2 cut(s) 82, 356
BshFI GGCC 2 cut(s) 378, 394
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 6 cut(s) 95, 254, 270, 332, 389, 453
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 6 cut(s) 269, 331, 335, 338, 374, 452
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 2 cut(s) 378, 394
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 2 cut(s) 13, 89
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 54, 117
Bsp68I TCGCGA 1 cut(s) 82
BspANI GGCC 2 cut(s) 378, 394
BspFNI CGCG 2 cut(s) 82, 356
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 393
BspT104I TTCGAA 2 cut(s) 13, 89
BsrFI RCCGGY 1 cut(s) 331
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 2 cut(s) 389, 452
BssMI GATC 2 cut(s) 54, 117
Bst4CI ACNGT 3 cut(s) 70, 198, 509
Bst6I CTCTTC 1 cut(s) 226
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBI TTCGAA 2 cut(s) 13, 89
BstC8I GCNNGC 3 cut(s) 84, 142, 333
BstF5I GGATG 2 cut(s) 227, 464
BstFNI CGCG 2 cut(s) 82, 356
BstHHI GCGC 2 cut(s) 137, 356
BstKTI GATC 2 cut(s) 57, 120
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 54, 117
BstMWI GCNNNNNNNGC 6 cut(s) 132, 141, 184, 304, 351, 400
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 3 cut(s) 388, 451, 452
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 2 cut(s) 82, 356
BsuRI GGCC 2 cut(s) 378, 394
BtsCI GGATG 2 cut(s) 227, 464
BtuMI TCGCGA 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 84, 142, 333
CciI TCATGA 1 cut(s) 51
CfoI GCGC 2 cut(s) 137, 356
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 112, 392
Cfr9I CCCGGG 1 cut(s) 452
CviAII CATG 3 cut(s) 52, 141, 153
CviJI RGCY 9 cut(s) 86, 94, 205, 267, 307, 378, 394, 471, 489
CviKI_1 RGCY 9 cut(s) 86, 94, 205, 267, 307, 378, 394, 471, 489
DpnI GATC 2 cut(s) 56, 119
DpnII GATC 2 cut(s) 54, 117
DraIII CACNNNGTG 1 cut(s) 132
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 4 cut(s) 198, 354, 360, 387
Eco47I GGWCC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 392
FaeI CATG 3 cut(s) 55, 144, 156
FaiI YATR 4 cut(s) 53, 142, 154, 461
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 51, 140, 152
FauI CCCGC 3 cut(s) 300, 328, 333
Fnu4HI GCNGC 6 cut(s) 138, 296, 329, 343, 368, 401
FokI GGATG 2 cut(s) 214, 451
Fsp4HI GCNGC 6 cut(s) 138, 296, 329, 343, 368, 401
FspBI CTAG 3 cut(s) 47, 264, 486
GlaI GCGC 2 cut(s) 136, 355
GluI GCNGC 6 cut(s) 138, 296, 329, 343, 368, 401
GsaI CCCAGC 1 cut(s) 307
HaeIII GGCC 2 cut(s) 378, 394
HapII CCGG 6 cut(s) 95, 254, 270, 332, 389, 453
HhaI GCGC 2 cut(s) 137, 356
Hin1II CATG 3 cut(s) 55, 144, 156
Hin6I GCGC 2 cut(s) 135, 354
HinP1I GCGC 2 cut(s) 135, 354
HinfI GANTC 1 cut(s) 18
HpaII CCGG 6 cut(s) 95, 254, 270, 332, 389, 453
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 52, 81
Hpy99I CGWCG 3 cut(s) 79, 82, 172
HpyAV CCTTC 2 cut(s) 192, 309
HpyCH4III ACNGT 3 cut(s) 70, 198, 509
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 6 cut(s) 132, 141, 184, 304, 351, 400
Hsp92II CATG 3 cut(s) 55, 144, 156
HspAI GCGC 2 cut(s) 135, 354
KroI GCCGGC 1 cut(s) 331
KroNI GCCGGC 1 cut(s) 333
Kzo9I GATC 2 cut(s) 54, 117
LmnI GCTCC 1 cut(s) 272
MaeI CTAG 3 cut(s) 47, 264, 486
MalI GATC 2 cut(s) 56, 119
MboI GATC 2 cut(s) 54, 117
MboII GAAGA 3 cut(s) 27, 207, 213
MfeI CAATTG 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 420
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 2 cut(s) 411, 501
MluNI TGGCCA 1 cut(s) 378
MmeI TCCRAC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 378
MreI CGCCGGCG 1 cut(s) 331
MroNI GCCGGC 1 cut(s) 331
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 378
Msp20I TGGCCA 1 cut(s) 378
MspI CCGG 6 cut(s) 95, 254, 270, 332, 389, 453
MspR9I CCNGG 3 cut(s) 390, 453, 454
MunI CAATTG 1 cut(s) 411
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 2 cut(s) 82, 356
MwoI GCNNNNNNNGC 6 cut(s) 132, 141, 184, 304, 351, 400
NaeI GCCGGC 1 cut(s) 333
NciI CCSGG 3 cut(s) 390, 453, 454
NdeII GATC 2 cut(s) 54, 117
NgoMIV GCCGGC 1 cut(s) 331
NlaIII CATG 3 cut(s) 55, 144, 156
NlaIV GGNNCC 1 cut(s) 393
NruI TCGCGA 1 cut(s) 82
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 2 cut(s) 13, 89
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 6 cut(s) 139, 297, 330, 344, 369, 402
PspFI CCCAGC 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 2 cut(s) 112, 392
PsyI GACNNNGTC 1 cut(s) 70
RruI TCGCGA 1 cut(s) 82
SatI GCNGC 6 cut(s) 138, 296, 329, 343, 368, 401
Sau3AI GATC 2 cut(s) 54, 117
Sau96I GGNCC 2 cut(s) 112, 392
ScrFI CCNGG 3 cut(s) 390, 453, 454
SduI GDGCHC 1 cut(s) 420
SetI ASST 7 cut(s) 88, 107, 184, 265, 269, 473, 491
SfuI TTCGAA 2 cut(s) 13, 89
SgrAI CRCCGGYG 1 cut(s) 331
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 1 cut(s) 454
SphI GCATGC 1 cut(s) 144
Sse9I AATT 2 cut(s) 411, 501
SspMI CTAG 3 cut(s) 47, 264, 486
StyD4I CCNGG 3 cut(s) 388, 451, 452
TaaI ACNGT 3 cut(s) 70, 198, 509
TaqI TCGA 4 cut(s) 13, 89, 120, 494
TasI AATT 2 cut(s) 411, 501
TauI GCSGC 6 cut(s) 140, 298, 331, 345, 370, 403
TfiI GAWTC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 502
TspMI CCCGGG 1 cut(s) 452
Tth111I GACNNNGTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 47, 264, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.