Rmu_sc0002260.1_g000029

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
OG0016671
Physical Location & Seq
Reverse (-)
114386 .. 115121
736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002260.1_g000029.1.cds

Sequence Viewer

Length: 576 bp
atgatctccactccaactgtgtcgtcgtcgcgagcttctaagccggagacaacctcaaaggaccagatcgaatgcacaatgtgcgccgcatgcgaaaacccatgctaccaagtcccgtcgccgccgccaccttcgcctcctccaccgtcaaagcctccgccatcttcctcatcctcacccatctgcccacctcctccggcacaacctagctccggcaccacctacaactctcccccgccgccttcccagcccgcttacacttactacccgccgccggccggaggaggtggaggaggtgcgttttatcctccgccgaatggccagaactacccggggccgccgccgccgaacccaattgtgccctacttcccgttttactatcacacccctcctcccggagtgagagagaagatccaaagtgatggtgctgatgagttcttgatcttgcagaagagtgaagaagaggaaacagaggactttgcatttccggaaatgccctcgtgcaacagtgaacaaaagtttctgtgcagtgtttactggaaatttgagcctctttccattgcagaagtaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.49

Weight (kDa)

4.57

Isoelectric Point (pI)

103.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 215
AccII CGCG 1 cut(s) 31
AccIII TCCGGA 1 cut(s) 487
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 2 cut(s) 276, 319
AcsI RAATTY 1 cut(s) 542
AdeI CACNNNGTG 1 cut(s) 81
AfiI CCNNNNNNNGG 6 cut(s) 212, 274, 278, 281, 317, 395
AluBI AGCT 2 cut(s) 35, 210
AluI AGCT 2 cut(s) 35, 210
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 1 cut(s) 406
Ama87I CYCGRG 1 cut(s) 331
Aor13HI TCCGGA 1 cut(s) 487
AoxI GGCC 3 cut(s) 276, 319, 335
ApoI RAATTY 1 cut(s) 542
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 61, 335
AsuC2I CCSGG 3 cut(s) 332, 333, 396
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 363
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 499
BccI CCATC 3 cut(s) 169, 188, 416
BcnI CCSGG 3 cut(s) 332, 333, 396
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 207
BisI GCNGC 8 cut(s) 87, 122, 125, 239, 272, 338, 341, 344
BlsI GCNGC 8 cut(s) 88, 123, 126, 240, 273, 339, 342, 345
Bme1390I CCNGG 3 cut(s) 332, 333, 396
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 61, 335
BmiI GGNNCC 2 cut(s) 217, 336
BmrFI CCNGG 3 cut(s) 332, 333, 396
BplI GAGNNNNNCTC 2 cut(s) 38, 70
BpuMI CCSGG 3 cut(s) 332, 333, 396
BsaJI CCNNGG 2 cut(s) 331, 332
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 376, 406
Bsc4I CCNNNNNNNGG 6 cut(s) 212, 274, 278, 281, 317, 395
Bse118I RCCGGY 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 487
BseDI CCNNGG 2 cut(s) 331, 332
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 6 cut(s) 212, 274, 278, 281, 317, 395
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 1 cut(s) 542
BseRI GAGGAG 5 cut(s) 129, 183, 297, 306, 381
BseSI GKGCMC 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 276
BseYI CCCAGC 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 31
Bsh1285I CGRYCG 1 cut(s) 279
BshFI GGCC 3 cut(s) 278, 321, 337
BshNI GGYRCC 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 331
BsiSI CCGG 8 cut(s) 44, 197, 213, 275, 279, 332, 396, 488
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 6 cut(s) 212, 274, 278, 281, 317, 395
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 3 cut(s) 278, 321, 337
BsoBI CYCGRG 1 cut(s) 331
Bsp1286I GDGCHC 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 487
Bsp143I GATC 4 cut(s) 3, 66, 411, 441
Bsp68I TCGCGA 1 cut(s) 31
BspANI GGCC 3 cut(s) 278, 321, 337
BspEI TCCGGA 1 cut(s) 487
BspFNI CGCG 1 cut(s) 31
BspLI GGNNCC 2 cut(s) 217, 336
BspPI GGATC 1 cut(s) 406
BspT107I GGYRCC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 274
BsrI ACTGG 1 cut(s) 542
BssAI RCCGGY 1 cut(s) 274
BssECI CCNNGG 2 cut(s) 331, 332
BssMI GATC 4 cut(s) 3, 66, 411, 441
BssSI CACGAG 1 cut(s) 499
Bst2BI CACGAG 1 cut(s) 499
Bst4CI ACNGT 3 cut(s) 19, 147, 509
Bst6I CTCTTC 2 cut(s) 446, 456
BstAPI GCANNNNNTGC 1 cut(s) 81
BstC8I GCNNGC 4 cut(s) 33, 91, 252, 276
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 4 cut(s) 6, 69, 414, 444
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 4 cut(s) 3, 66, 411, 441
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 5 cut(s) 81, 90, 133, 247, 343
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 3 cut(s) 330, 331, 394
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 31
BstX2I RGATCY 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 422
BstYI RGATCY 1 cut(s) 411
BstZI CGGCCG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 278, 321, 337
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 514, 535
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 4 cut(s) 33, 91, 252, 276
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 61, 335
Cfr9I CCCGGG 1 cut(s) 331
CviAII CATG 2 cut(s) 90, 102
CviJI RGCY 9 cut(s) 35, 43, 154, 210, 250, 278, 321, 337, 550
CviKI_1 RGCY 9 cut(s) 35, 43, 154, 210, 250, 278, 321, 337, 550
DdeI CTNAG 1 cut(s) 39
DpnI GATC 4 cut(s) 5, 68, 413, 443
DpnII GATC 4 cut(s) 3, 66, 411, 441
DraIII CACNNNGTG 1 cut(s) 81
EaeI YGGCCR 2 cut(s) 276, 319
EagI CGGCCG 1 cut(s) 276
Eam1104I CTCTTC 2 cut(s) 446, 456
EarI CTCTTC 2 cut(s) 446, 456
EciI GGCGGA 2 cut(s) 147, 300
EclXI CGGCCG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 331
FaeI CATG 2 cut(s) 93, 105
FaiI YATR 2 cut(s) 91, 103
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 89, 101
FauI CCCGC 3 cut(s) 243, 259, 276
Fnu4HI GCNGC 8 cut(s) 87, 122, 125, 239, 272, 338, 341, 344
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 8 cut(s) 87, 122, 125, 239, 272, 338, 341, 344
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 85
GluI GCNGC 8 cut(s) 87, 122, 125, 239, 272, 338, 341, 344
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 3 cut(s) 278, 321, 337
HapII CCGG 8 cut(s) 44, 197, 213, 275, 279, 332, 396, 488
HhaI GCGC 1 cut(s) 86
Hin1II CATG 2 cut(s) 93, 105
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HpaII CCGG 8 cut(s) 44, 197, 213, 275, 279, 332, 396, 488
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 512, 535
Hpy188III TCNNGA 3 cut(s) 30, 439, 488
Hpy8I GTNNAC 2 cut(s) 512, 535
Hpy99I CGWCG 3 cut(s) 28, 31, 121
HpyAV CCTTC 2 cut(s) 141, 252
HpyCH4III ACNGT 3 cut(s) 19, 147, 509
HpyCH4V TGCA 6 cut(s) 75, 448, 482, 504, 528, 563
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 90, 133, 247, 343
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 93, 105
HspAI GCGC 1 cut(s) 84
Kpn2I TCCGGA 1 cut(s) 487
KroI GCCGGC 1 cut(s) 274
KroNI GCCGGC 1 cut(s) 276
Kzo9I GATC 4 cut(s) 3, 66, 411, 441
LmnI GCTCC 1 cut(s) 215
MaeI CTAG 1 cut(s) 207
MalI GATC 4 cut(s) 5, 68, 413, 443
MboI GATC 4 cut(s) 3, 66, 411, 441
MboII GAAGA 5 cut(s) 156, 421, 463, 470, 473
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 363
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 2 cut(s) 354, 542
MluNI TGGCCA 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 38
Mox20I TGGCCA 1 cut(s) 321
MroI TCCGGA 1 cut(s) 487
MroNI GCCGGC 1 cut(s) 274
MscI TGGCCA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 8 cut(s) 44, 197, 213, 275, 279, 332, 396, 488
MspR9I CCNGG 3 cut(s) 332, 333, 396
MunI CAATTG 1 cut(s) 354
Mva1269I GAATGC 1 cut(s) 77
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 5 cut(s) 81, 90, 133, 247, 343
NaeI GCCGGC 1 cut(s) 276
NciI CCSGG 3 cut(s) 332, 333, 396
NdeII GATC 4 cut(s) 3, 66, 411, 441
NgoMIV GCCGGC 1 cut(s) 274
NlaIII CATG 2 cut(s) 93, 105
NlaIV GGNNCC 2 cut(s) 217, 336
NruI TCGCGA 1 cut(s) 31
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PctI GAATGC 1 cut(s) 77
PdiI GCCGGC 1 cut(s) 276
PfoI TCCNGGA 1 cut(s) 394
PkrI GCNGC 8 cut(s) 88, 123, 126, 240, 273, 339, 342, 345
PspFI CCCAGC 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 217, 336
PspPI GGNCC 2 cut(s) 61, 335
PsuI RGATCY 1 cut(s) 411
RruI TCGCGA 1 cut(s) 31
SatI GCNGC 8 cut(s) 87, 122, 125, 239, 272, 338, 341, 344
Sau3AI GATC 4 cut(s) 3, 66, 411, 441
Sau96I GGNCC 2 cut(s) 61, 335
ScrFI CCNGG 3 cut(s) 332, 333, 396
SduI GDGCHC 1 cut(s) 363
SetI ASST 9 cut(s) 37, 56, 133, 193, 208, 212, 224, 289, 298
SinI GGWCC 1 cut(s) 61
SmaI CCCGGG 1 cut(s) 333
SphI GCATGC 1 cut(s) 93
Sse9I AATT 2 cut(s) 354, 542
SspMI CTAG 1 cut(s) 207
StyD4I CCNGG 3 cut(s) 330, 331, 394
TaaI ACNGT 3 cut(s) 19, 147, 509
TaqI TCGA 1 cut(s) 69
TasI AATT 2 cut(s) 354, 542
TauI GCSGC 8 cut(s) 89, 124, 127, 241, 274, 340, 343, 346
TscAI CASTG 2 cut(s) 514, 535
TspMI CCCGGG 1 cut(s) 331
TspRI CASTG 2 cut(s) 514, 535
VpaK11BI GGWCC 1 cut(s) 61
XapI RAATTY 1 cut(s) 542
XceI RCATGY 1 cut(s) 93
XmaI CCCGGG 1 cut(s) 331
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.