Prupe.1G126200_v2.0.a1

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016671
Physical Location & Seq
Reverse (-)
9934025 .. 9935288
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G126200.1

Sequence Viewer

Length: 555 bp
ATGAAAACTTTTCATAAAACCCAATTGAGTCTCATCGTGCTTCTAGTGATGATGGCCTCAACCACAACGATGTCTTCACCATCACCAAAGTCGAAGGTGACCTCCAAGGCCCAGATCGAATGCACAATGTGCTCCCTATGCGAAAACCCATGTGGCCAAGTTCAATCTCCGCCACCTCCTCCCCCTTCATCTCCGCCTCCTTCTCCGCCGTCGTCATCCTCCAACTGTCCGCCTCCGCCGTCGCCGCCGAGCTCCGGCACCACCTACTACTCTCCTCCGCCTCCGGCTCAGCCCACTTACTACTACTACCCGCCTCCGCAAGGTGGTGGTGGCGGCGGCGGCGGAAGTGGAGCGTTTTATCCGCCGCCCAATAACAAGAACTACCCTGTGCCGCCACCACCGAACCCAATTGTGCCGTACTTTCCGTTTTACTATTATAACCCTCCTCCTCACTCTACGTCATCCAGCTCAGTTCAGCTGATGACTAGCAGCTACCCATTAGTTTACAGTGTTGTCAGTGTTGCTCTGTTTTCTGTTCTAAGTTGTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.41

Weight (kDa)

8.71

Isoelectric Point (pI)

105.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 438
AccB1I GGYRCC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 154
AdeI CACNNNGTG 1 cut(s) 129
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 3 cut(s) 254, 320, 323
AgsI TTSAA 1 cut(s) 164
AluBI AGCT 4 cut(s) 252, 468, 478, 492
AluI AGCT 4 cut(s) 252, 468, 478, 492
Alw21I GWGCWC 2 cut(s) 134, 254
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 3 cut(s) 54, 108, 154
ApeKI GCWGC 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 69, 75, 109
BalI TGGCCA 1 cut(s) 156
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 134, 254
BbvI GCAGC 1 cut(s) 501
BccI CCATC 2 cut(s) 46, 88
BceAI ACGGC 3 cut(s) 193, 223, 400
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 44, 486
BisI GCNGC 7 cut(s) 245, 334, 337, 340, 365, 392, 490
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 7 cut(s) 246, 335, 338, 341, 366, 393, 491
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 259
BpiI GAAGAC 1 cut(s) 66
Bpu1102I GCTNAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 320, 323
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 215, 461
BseLI CCNNNNNNNGG 3 cut(s) 254, 320, 323
BseMII CTCAG 2 cut(s) 302, 483
BseRI GAGGAG 4 cut(s) 168, 264, 435, 438
BseXI GCAGC 1 cut(s) 501
BshFI GGCC 3 cut(s) 56, 110, 156
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 134, 254
BsiSI CCGG 2 cut(s) 255, 284
BslI CCNNNNNNNGG 3 cut(s) 254, 320, 323
BsmAI GTCTC 1 cut(s) 35
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 3 cut(s) 56, 110, 156
Bsp1286I GDGCHC 2 cut(s) 134, 254
Bsp143I GATC 1 cut(s) 114
Bsp1720I GCTNAGC 1 cut(s) 288
BspANI GGCC 3 cut(s) 56, 110, 156
BspCNI CTCAG 2 cut(s) 301, 482
BspLI GGNNCC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 2 cut(s) 227, 509
BstAPI GCANNNNNTGC 1 cut(s) 129
BstDEI CTNAG 3 cut(s) 288, 469, 539
BstEII GGTNACC 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 318
BstF5I GGATG 2 cut(s) 215, 461
BstKTI GATC 1 cut(s) 117
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 114
BstMWI GCNNNNNNNGC 4 cut(s) 129, 138, 244, 339
BstPI GGTNACC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 501
BstV2I GAAGAC 1 cut(s) 66
BsuRI GGCC 3 cut(s) 56, 110, 156
BtsCI GGATG 2 cut(s) 215, 461
BtsIMutI CAGTG 2 cut(s) 514, 523
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 418
CviAII CATG 1 cut(s) 150
CviJI RGCY 9 cut(s) 56, 110, 156, 252, 287, 292, 468, 478, 492
CviKI_1 RGCY 9 cut(s) 56, 110, 156, 252, 287, 292, 468, 478, 492
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 3 cut(s) 288, 469, 539
DpnI GATC 1 cut(s) 116
DpnII GATC 1 cut(s) 114
DraIII CACNNNGTG 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 154
EciI GGCGGA 8 cut(s) 159, 183, 195, 219, 225, 267, 351, 357
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 1 cut(s) 105
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
Eco91I GGTNACC 1 cut(s) 97
EcoICRI GAGCTC 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 318
EcoO65I GGTNACC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 105
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 15, 139, 151, 438
FatI CATG 1 cut(s) 149
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 7 cut(s) 245, 334, 337, 340, 365, 392, 490
FokI GGATG 2 cut(s) 202, 448
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 7 cut(s) 245, 334, 337, 340, 365, 392, 490
FspBI CTAG 2 cut(s) 44, 486
GluI GCNGC 7 cut(s) 245, 334, 337, 340, 365, 392, 490
HaeIII GGCC 3 cut(s) 56, 110, 156
HapII CCGG 2 cut(s) 255, 284
Hin1II CATG 1 cut(s) 153
HinfI GANTC 1 cut(s) 28
HpaII CCGG 2 cut(s) 255, 284
HphI GGTGA 3 cut(s) 69, 75, 109
Hpy166II GTNNAC 1 cut(s) 505
Hpy8I GTNNAC 1 cut(s) 505
Hpy99I CGWCG 2 cut(s) 214, 244
HpyAV CCTTC 3 cut(s) 88, 195, 210
HpyCH4III ACNGT 2 cut(s) 227, 509
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 123
HpyF10VI GCNNNNNNNGC 4 cut(s) 129, 138, 244, 339
HpyF3I CTNAG 3 cut(s) 288, 469, 539
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 1 cut(s) 153
Kzo9I GATC 1 cut(s) 114
LmnI GCTCC 3 cut(s) 137, 257, 350
LpnPI CCDG 5 cut(s) 125, 268, 297, 399, 478
Lsp1109I GCAGC 1 cut(s) 501
MaeI CTAG 2 cut(s) 44, 486
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 116
MboI GATC 1 cut(s) 114
MboII GAAGA 1 cut(s) 66
MfeI CAATTG 2 cut(s) 23, 408
MhlI GDGCHC 2 cut(s) 134, 254
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 2 cut(s) 23, 408
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 1 cut(s) 246
Mox20I TGGCCA 1 cut(s) 156
MscI TGGCCA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 255, 284
MunI CAATTG 2 cut(s) 23, 408
Mva1269I GAATGC 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 129, 138, 244, 339
NdeII GATC 1 cut(s) 114
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 97
PctI GAATGC 1 cut(s) 125
PkrI GCNGC 7 cut(s) 246, 335, 338, 341, 366, 393, 491
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 478
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 254
SatI GCNGC 7 cut(s) 245, 334, 337, 340, 365, 392, 490
Sau3AI GATC 1 cut(s) 114
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 37
SduI GDGCHC 2 cut(s) 134, 254
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 23, 408
SspMI CTAG 2 cut(s) 44, 486
SstI GAGCTC 1 cut(s) 254
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 2 cut(s) 227, 509
TaiI ACGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 92, 117
TasI AATT 2 cut(s) 23, 408
TauI GCSGC 6 cut(s) 247, 336, 339, 342, 367, 394
TscAI CASTG 2 cut(s) 514, 523
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 17, 177
TspGWI ACGGA 1 cut(s) 414
TspRI CASTG 2 cut(s) 514, 523
XagI CCTNNNNNAGG 1 cut(s) 318
XspI CTAG 2 cut(s) 44, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.