RchiOBHm_Chr4g0424231

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016671
Physical Location & Seq
Forward (+)
49786270 .. 49787876
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39352

Sequence Viewer

Length: 540 bp
ATGGAAAGAGTTCGAAGATTCTCACTTCTTGGTCTCATTTCGTTCCTAGTCATGATCTCCACTCCAACTGTGTCGTCGTCGCGAGCTTCTAAGCCGGAGACAACCTCAAAGGACCAGATCGAATGCACAATGTGCGCCGCATGCGAAAACCCATGCTACCAAGTCCCGTCGCCGCCGCCACCTTCGCCTCCTCCACCGTCAAAGCCTCCACCATCTTCCTCATCCTCACCCATCTGCCCACCTCCTCCGGCACAACCTAGCTCCGGCACCACCTACAACTCTCCCCCGCCGCCTTCCCAGCCCATTTACACTTACTACCCGCCGCCGGCCGGAGGAGGTGGAGGAGGTGCGTTTTATCCTCCGCCGAATGGCCAGAACTACCCGGGGCCGCCGCCGCCGAACCCAATTGTGCCCTACTTCCCGTTTTACTATCACACCCCTCCTCCCGGGTCTATATCATCCAGCTCAGTTCAGCTCACTAGCTACTCAATAATAATTTACAGTTTCATTAGTGTTGCTCTGTTTTCTCGTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

18.99

Weight (kDa)

8.61

Isoelectric Point (pI)

94.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 82
AcoI YGGCCR 2 cut(s) 327, 370
AdeI CACNNNGTG 1 cut(s) 132
AfiI CCNNNNNNNGG 6 cut(s) 263, 325, 329, 332, 368, 446
AluBI AGCT 5 cut(s) 86, 261, 465, 475, 483
AluI AGCT 5 cut(s) 86, 261, 465, 475, 483
Alw26I GTCTC 2 cut(s) 38, 92
Ama87I CYCGRG 2 cut(s) 382, 446
AoxI GGCC 3 cut(s) 327, 370, 386
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 112, 386
AsuC2I CCSGG 4 cut(s) 383, 384, 447, 448
AsuHPI GGTGA 1 cut(s) 219
AsuII TTCGAA 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 382, 446
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 414
BalI TGGCCA 1 cut(s) 372
BanI GGYRCC 1 cut(s) 266
BccI CCATC 2 cut(s) 220, 239
BcnI CCSGG 4 cut(s) 383, 384, 447, 448
BcoDI GTCTC 2 cut(s) 38, 92
BfaI CTAG 3 cut(s) 47, 258, 480
BisI GCNGC 8 cut(s) 138, 173, 176, 290, 323, 389, 392, 395
BlsI GCNGC 8 cut(s) 139, 174, 177, 291, 324, 390, 393, 396
Bme1390I CCNGG 4 cut(s) 383, 384, 447, 448
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 2 cut(s) 382, 446
BmgT120I GGNCC 2 cut(s) 112, 386
BmiI GGNNCC 2 cut(s) 268, 387
BmrFI CCNGG 4 cut(s) 383, 384, 447, 448
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 4 cut(s) 383, 384, 447, 448
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 3 cut(s) 382, 383, 446
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 325, 329, 332, 368, 446
Bse118I RCCGGY 1 cut(s) 325
BseDI CCNNGG 3 cut(s) 382, 383, 446
BseGI GGATG 2 cut(s) 221, 458
BseLI CCNNNNNNNGG 6 cut(s) 263, 325, 329, 332, 368, 446
BseMII CTCAG 1 cut(s) 480
BseRI GAGGAG 5 cut(s) 180, 234, 348, 357, 432
BseSI GKGCMC 1 cut(s) 414
BseX3I CGGCCG 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 82
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 3 cut(s) 329, 372, 388
BshNI GGYRCC 1 cut(s) 266
BsiEI CGRYCG 1 cut(s) 330
BsiHKCI CYCGRG 2 cut(s) 382, 446
BsiSI CCGG 7 cut(s) 95, 248, 264, 326, 330, 383, 447
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 6 cut(s) 263, 325, 329, 332, 368, 446
BsmAI GTCTC 2 cut(s) 38, 92
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 3 cut(s) 329, 372, 388
Bso31I GGTCTC 1 cut(s) 38
BsoBI CYCGRG 2 cut(s) 382, 446
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 2 cut(s) 54, 117
Bsp68I TCGCGA 1 cut(s) 82
BspANI GGCC 3 cut(s) 329, 372, 388
BspCNI CTCAG 1 cut(s) 479
BspFNI CGCG 1 cut(s) 82
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 268, 387
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 38
BsrFI RCCGGY 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 325
BssECI CCNNGG 3 cut(s) 382, 383, 446
BssMI GATC 2 cut(s) 54, 117
Bst4CI ACNGT 3 cut(s) 70, 198, 503
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 84, 142, 327
BstDEI CTNAG 2 cut(s) 90, 466
BstF5I GGATG 2 cut(s) 221, 458
BstFNI CGCG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 57, 120
BstMAI GTCTC 2 cut(s) 38, 92
BstMBI GATC 2 cut(s) 54, 117
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 132, 141, 184, 298, 394
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 4 cut(s) 381, 382, 445, 446
BstSLI GKGCMC 1 cut(s) 414
BstUI CGCG 1 cut(s) 82
BstZI CGGCCG 1 cut(s) 327
BsuRI GGCC 3 cut(s) 329, 372, 388
BtsCI GGATG 2 cut(s) 221, 458
BtuMI TCGCGA 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 84, 142, 327
CciI TCATGA 1 cut(s) 51
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 112, 386
Cfr9I CCCGGG 2 cut(s) 382, 446
CviAII CATG 3 cut(s) 52, 141, 153
DdeI CTNAG 2 cut(s) 90, 466
DpnI GATC 2 cut(s) 56, 119
DpnII GATC 2 cut(s) 54, 117
DraIII CACNNNGTG 1 cut(s) 132
EaeI YGGCCR 2 cut(s) 327, 370
EagI CGGCCG 1 cut(s) 327
EciI GGCGGA 1 cut(s) 351
EclXI CGGCCG 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 327
Eco88I CYCGRG 2 cut(s) 382, 446
FaeI CATG 3 cut(s) 55, 144, 156
FaiI YATR 4 cut(s) 53, 142, 154, 455
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 51, 140, 152
FauI CCCGC 2 cut(s) 294, 327
Fnu4HI GCNGC 8 cut(s) 138, 173, 176, 290, 323, 389, 392, 395
FokI GGATG 2 cut(s) 208, 445
Fsp4HI GCNGC 8 cut(s) 138, 173, 176, 290, 323, 389, 392, 395
FspBI CTAG 3 cut(s) 47, 258, 480
GlaI GCGC 1 cut(s) 136
GluI GCNGC 8 cut(s) 138, 173, 176, 290, 323, 389, 392, 395
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 3 cut(s) 329, 372, 388
HapII CCGG 7 cut(s) 95, 248, 264, 326, 330, 383, 447
HhaI GCGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 55, 144, 156
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HinfI GANTC 1 cut(s) 18
HpaII CCGG 7 cut(s) 95, 248, 264, 326, 330, 383, 447
HphI GGTGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 52, 81
Hpy99I CGWCG 3 cut(s) 79, 82, 172
HpyAV CCTTC 2 cut(s) 192, 303
HpyCH4III ACNGT 3 cut(s) 70, 198, 503
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 141, 184, 298, 394
HpyF3I CTNAG 2 cut(s) 90, 466
Hsp92II CATG 3 cut(s) 55, 144, 156
HspAI GCGC 1 cut(s) 135
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Kzo9I GATC 2 cut(s) 54, 117
LmnI GCTCC 1 cut(s) 266
MaeI CTAG 3 cut(s) 47, 258, 480
MalI GATC 2 cut(s) 56, 119
MboI GATC 2 cut(s) 54, 117
MboII GAAGA 2 cut(s) 27, 207
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 414
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 2 cut(s) 405, 495
MluNI TGGCCA 1 cut(s) 372
MmeI TCCRAC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 372
MroNI GCCGGC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 372
MspI CCGG 7 cut(s) 95, 248, 264, 326, 330, 383, 447
MspR9I CCNGG 4 cut(s) 383, 384, 447, 448
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 5 cut(s) 132, 141, 184, 298, 394
NaeI GCCGGC 1 cut(s) 327
NciI CCSGG 4 cut(s) 383, 384, 447, 448
NdeII GATC 2 cut(s) 54, 117
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 3 cut(s) 55, 144, 156
NlaIV GGNNCC 2 cut(s) 268, 387
NruI TCGCGA 1 cut(s) 82
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 13
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 51
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 18
PkrI GCNGC 8 cut(s) 139, 174, 177, 291, 324, 390, 393, 396
PspFI CCCAGC 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 268, 387
PspPI GGNCC 2 cut(s) 112, 386
RruI TCGCGA 1 cut(s) 82
SatI GCNGC 8 cut(s) 138, 173, 176, 290, 323, 389, 392, 395
Sau3AI GATC 2 cut(s) 54, 117
Sau96I GGNCC 2 cut(s) 112, 386
ScrFI CCNGG 4 cut(s) 383, 384, 447, 448
SduI GDGCHC 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 2 cut(s) 384, 448
SphI GCATGC 1 cut(s) 144
Sse9I AATT 2 cut(s) 405, 495
SspMI CTAG 3 cut(s) 47, 258, 480
StyD4I CCNGG 4 cut(s) 381, 382, 445, 446
TaaI ACNGT 3 cut(s) 70, 198, 503
TaqI TCGA 2 cut(s) 13, 120
TasI AATT 2 cut(s) 405, 495
TauI GCSGC 8 cut(s) 140, 175, 178, 292, 325, 391, 394, 397
TfiI GAWTC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 496
TspMI CCCGGG 2 cut(s) 382, 446
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 144
XmaI CCCGGG 2 cut(s) 382, 446
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 47, 258, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.