Rh4BG257300

leucine-rich repeat extensin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016671
Physical Location & Seq
Forward (+)
42916493 .. 42919298
2806 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG257300.1

Sequence Viewer

Length: 525 bp
ATGGAAAGAGTTCGAAGATTCTCACTTCTTGTTCTCATTTCGTTCCTAGTCATGATCTCCACTCCAACTGTGTCGTCGTCGCGAGCTTCTAAGCCGGAGACAACCTCAAAGGACCAGATCGAATGCACAATGTGCGCCGCATGCGAAAACCCATGCTACCAAGTCCCGTCGCCGCCGCCACCTCCTCCACCGTCAAAGCCTCCGCCATCTTCCTCATCCTCACCCATCTGCCCACCTCCTCCTAGCTCCGGCACCACCTACAACTCTCCCCCGCCGCCTTCCCAGCCCACTTACACTTACTACCCGCCGCCGGCCGGAGGCGGTGGAGGAGGCGCGTTTTATCCGCCACCGAATGGCCAGAACTACCCGGGGCCGCCGCCGCCGAACCCAATTGTGCCCTACTTCCCGTTTTACTATCACACCCCTCCTCCCGGGTCTATATCATCCAGCTCGGTTCAGCTCACTAGCTACTCAATAATAATTTACAGTTTCATTAGTGTTGCTCTGTTTTCTCGTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.54

Weight (kDa)

8.61

Isoelectric Point (pI)

90.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016671)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06750 AT5G49280
fragaria_vesca FvH4_4g19250
prunus_persica Prupe.1G126200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0424231
rosa_laevigata RLG00000007487
rosa_multiflora Rmu_sc0002260.1_g000029
rosa_roxburghii Rroxscaffold_5G00366180
rosa_rugosa Rorug04G0194500
rosa_samantha Rh4AG251900 Rh4BG257300 Rh4CG267800 Rh4DG251600
rosa_wichuraiana Rw4G021720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 353
AccII CGCG 2 cut(s) 82, 335
AcoI YGGCCR 2 cut(s) 312, 355
AdeI CACNNNGTG 1 cut(s) 132
AfiI CCNNNNNNNGG 6 cut(s) 248, 310, 314, 317, 353, 431
AluBI AGCT 5 cut(s) 86, 246, 450, 460, 468
AluI AGCT 5 cut(s) 86, 246, 450, 460, 468
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 2 cut(s) 367, 431
AoxI GGCC 3 cut(s) 312, 355, 371
Asp700I GAANNNNTTC 1 cut(s) 9
AspLEI GCGC 2 cut(s) 137, 335
AspS9I GGNCC 2 cut(s) 112, 371
AsuC2I CCSGG 4 cut(s) 368, 369, 432, 433
AsuHPI GGTGA 1 cut(s) 213
AsuII TTCGAA 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 367, 431
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 1 cut(s) 357
BanI GGYRCC 1 cut(s) 251
BccI CCATC 2 cut(s) 214, 233
BcnI CCSGG 4 cut(s) 368, 369, 432, 433
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 3 cut(s) 47, 243, 465
BisI GCNGC 8 cut(s) 138, 173, 176, 275, 308, 374, 377, 380
BlsI GCNGC 8 cut(s) 139, 174, 177, 276, 309, 375, 378, 381
Bme1390I CCNGG 4 cut(s) 368, 369, 432, 433
Bme18I GGWCC 1 cut(s) 112
BmeT110I CYCGRG 2 cut(s) 367, 431
BmgT120I GGNCC 2 cut(s) 112, 371
BmiI GGNNCC 2 cut(s) 253, 372
BmrFI CCNGG 4 cut(s) 368, 369, 432, 433
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 13
BpuMI CCSGG 4 cut(s) 368, 369, 432, 433
BsaJI CCNNGG 3 cut(s) 367, 368, 431
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 6 cut(s) 248, 310, 314, 317, 353, 431
Bse118I RCCGGY 1 cut(s) 310
BseDI CCNNGG 3 cut(s) 367, 368, 431
BseGI GGATG 2 cut(s) 215, 443
BseLI CCNNNNNNNGG 6 cut(s) 248, 310, 314, 317, 353, 431
BseRI GAGGAG 4 cut(s) 174, 228, 342, 417
BseSI GKGCMC 1 cut(s) 399
BseX3I CGGCCG 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 2 cut(s) 82, 335
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 3 cut(s) 314, 357, 373
BshNI GGYRCC 1 cut(s) 251
BsiEI CGRYCG 1 cut(s) 315
BsiHKCI CYCGRG 2 cut(s) 367, 431
BsiSI CCGG 6 cut(s) 95, 249, 311, 315, 368, 432
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 6 cut(s) 248, 310, 314, 317, 353, 431
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 3 cut(s) 314, 357, 373
BsoBI CYCGRG 2 cut(s) 367, 431
Bsp119I TTCGAA 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 2 cut(s) 54, 117
Bsp68I TCGCGA 1 cut(s) 82
BspANI GGCC 3 cut(s) 314, 357, 373
BspFNI CGCG 2 cut(s) 82, 335
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 253, 372
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 3 cut(s) 367, 368, 431
BssMI GATC 2 cut(s) 54, 117
Bst4CI ACNGT 3 cut(s) 70, 192, 488
BstAPI GCANNNNNTGC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 3 cut(s) 84, 142, 312
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 215, 443
BstFNI CGCG 2 cut(s) 82, 335
BstHHI GCGC 2 cut(s) 137, 335
BstKTI GATC 2 cut(s) 57, 120
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 2 cut(s) 54, 117
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 4 cut(s) 132, 141, 283, 379
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 4 cut(s) 366, 367, 430, 431
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 2 cut(s) 82, 335
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 3 cut(s) 314, 357, 373
BtsCI GGATG 2 cut(s) 215, 443
BtuMI TCGCGA 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 84, 142, 312
CciI TCATGA 1 cut(s) 51
CfoI GCGC 2 cut(s) 137, 335
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 2 cut(s) 112, 371
Cfr9I CCCGGG 2 cut(s) 367, 431
CviAII CATG 3 cut(s) 52, 141, 153
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 56, 119
DpnII GATC 2 cut(s) 54, 117
DraIII CACNNNGTG 1 cut(s) 132
EaeI YGGCCR 2 cut(s) 312, 355
EagI CGGCCG 1 cut(s) 312
EciI GGCGGA 2 cut(s) 192, 333
EclXI CGGCCG 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 312
Eco88I CYCGRG 2 cut(s) 367, 431
FaeI CATG 3 cut(s) 55, 144, 156
FaiI YATR 4 cut(s) 53, 142, 154, 440
FaqI GGGAC 1 cut(s) 149
FatI CATG 3 cut(s) 51, 140, 152
FauI CCCGC 2 cut(s) 279, 312
Fnu4HI GCNGC 8 cut(s) 138, 173, 176, 275, 308, 374, 377, 380
FokI GGATG 2 cut(s) 202, 430
Fsp4HI GCNGC 8 cut(s) 138, 173, 176, 275, 308, 374, 377, 380
FspBI CTAG 3 cut(s) 47, 243, 465
GlaI GCGC 2 cut(s) 136, 334
GluI GCNGC 8 cut(s) 138, 173, 176, 275, 308, 374, 377, 380
GsaI CCCAGC 1 cut(s) 286
HaeIII GGCC 3 cut(s) 314, 357, 373
HapII CCGG 6 cut(s) 95, 249, 311, 315, 368, 432
HhaI GCGC 2 cut(s) 137, 335
Hin1II CATG 3 cut(s) 55, 144, 156
Hin6I GCGC 2 cut(s) 135, 333
HinP1I GCGC 2 cut(s) 135, 333
HinfI GANTC 1 cut(s) 18
HpaII CCGG 6 cut(s) 95, 249, 311, 315, 368, 432
HphI GGTGA 1 cut(s) 213
Hpy188III TCNNGA 2 cut(s) 52, 81
Hpy99I CGWCG 3 cut(s) 79, 82, 172
HpyAV CCTTC 1 cut(s) 288
HpyCH4III ACNGT 3 cut(s) 70, 192, 488
HpyCH4V TGCA 1 cut(s) 126
HpyF10VI GCNNNNNNNGC 4 cut(s) 132, 141, 283, 379
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 3 cut(s) 55, 144, 156
HspAI GCGC 2 cut(s) 135, 333
KroI GCCGGC 1 cut(s) 310
KroNI GCCGGC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 54, 117
LmnI GCTCC 1 cut(s) 251
MaeI CTAG 3 cut(s) 47, 243, 465
MalI GATC 2 cut(s) 56, 119
MboI GATC 2 cut(s) 54, 117
MboII GAAGA 2 cut(s) 27, 201
MfeI CAATTG 1 cut(s) 390
MhlI GDGCHC 1 cut(s) 399
MlsI TGGCCA 1 cut(s) 357
MluCI AATT 2 cut(s) 390, 480
MluNI TGGCCA 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 89
Mox20I TGGCCA 1 cut(s) 357
MroNI GCCGGC 1 cut(s) 310
MroXI GAANNNNTTC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 357
MspI CCGG 6 cut(s) 95, 249, 311, 315, 368, 432
MspR9I CCNGG 4 cut(s) 368, 369, 432, 433
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 2 cut(s) 82, 335
MwoI GCNNNNNNNGC 4 cut(s) 132, 141, 283, 379
NaeI GCCGGC 1 cut(s) 312
NciI CCSGG 4 cut(s) 368, 369, 432, 433
NdeII GATC 2 cut(s) 54, 117
NgoMIV GCCGGC 1 cut(s) 310
NlaIII CATG 3 cut(s) 55, 144, 156
NlaIV GGNNCC 2 cut(s) 253, 372
NruI TCGCGA 1 cut(s) 82
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 13
PaeI GCATGC 1 cut(s) 144
PagI TCATGA 1 cut(s) 51
PctI GAATGC 1 cut(s) 128
PdiI GCCGGC 1 cut(s) 312
PdmI GAANNNNTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 18
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 8 cut(s) 139, 174, 177, 276, 309, 375, 378, 381
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 253, 372
PspPI GGNCC 2 cut(s) 112, 371
RruI TCGCGA 1 cut(s) 82
SatI GCNGC 8 cut(s) 138, 173, 176, 275, 308, 374, 377, 380
Sau3AI GATC 2 cut(s) 54, 117
Sau96I GGNCC 2 cut(s) 112, 371
ScrFI CCNGG 4 cut(s) 368, 369, 432, 433
SduI GDGCHC 1 cut(s) 399
SetI ASST 9 cut(s) 88, 107, 184, 238, 248, 260, 452, 462, 470
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 112
SmaI CCCGGG 2 cut(s) 369, 433
SphI GCATGC 1 cut(s) 144
Sse9I AATT 2 cut(s) 390, 480
SspMI CTAG 3 cut(s) 47, 243, 465
StyD4I CCNGG 4 cut(s) 366, 367, 430, 431
TaaI ACNGT 3 cut(s) 70, 192, 488
TaqI TCGA 2 cut(s) 13, 120
TasI AATT 2 cut(s) 390, 480
TauI GCSGC 8 cut(s) 140, 175, 178, 277, 310, 376, 379, 382
TfiI GAWTC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 481
TspMI CCCGGG 2 cut(s) 367, 431
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 1 cut(s) 112
XceI RCATGY 1 cut(s) 144
XmaI CCCGGG 2 cut(s) 367, 431
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 3 cut(s) 47, 243, 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.