FvH4_4g21560

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016825
Physical Location & Seq
Reverse (-)
24589682 .. 24590953
1272 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21560.t1

Sequence Viewer

Length: 999 bp
ATGGCTTCAAACAGATCTTATTACTTAGTGTTGTTGGTTATAGCAGTGGCGGTTATGCTGGCCAACTTCTGCAGCGGTTCTGGGGTTGGCCACATGCCCTCGACGGAGGAGGAAGGCCGAGACTTTGAGGAGTTTACAGACCAGACAGGGAGAGCGAAAGTGGTGGTGGATGAGAAAGGTGGTAAAGAAGGTTCAGAGTCTTGGACAGAATGGGCCAAGGAGAAAATTGGGTTGAAGAGCGATGAGCATGAGGGTGATAGTACCACCAAGAAAGCTTCTGATGCTGCGTATGATACCACTAAGAAGACCAAGGACACCGCCTCTGGAGCTGGTCAATACTCGACGGAGAAAGACAACGAGGGGGCAGAGAAGGCGAAAGGGATGAAAGACATGGCTGTTGATAAAGCCGGTAAAATGGTAGGCGCAGTGAAGGAGAAGGCAGGTAAGACATACGAGTATGCGACAGACAAGGCTTATGATATCACGAATGTGGCGAAAGAGAAAACCTATGAAGCGGAAAATGCTGCAAAAGAGAAGGCATATGATGCTGGAAGGACGGTGAAGGACAAGACTTTTGAGACAACAAATGCCGCTAAAGAAAAGGCAGCTAAGGATGCCGAGAAGACTGATGAGGCGAAGGAGAAAGCGAAGCAAGAGGCAGAGGAGTTGAAAGACAAGGCCTATGAGACCACAAAGGGGGCAAAGGACAAGACTTATAAGTCCACCGATGCAGCCAAAGACAAGGCATATGAGGCAGCTAAGGCCGCAAAAGACAAGACTTACGAGACGACAAATGCAGCTAAAGATGATAAGGCGGCCAGGGCTGGAGAGACGGCTAGTGAGGCAAAGGAAAGAGCTGAGCAAGAGGCGGGGAAGTTGAAGGACGAGACTTATGAGACCACTTACCAAACCGGAAATGTAGCAAAAGACAAGGCCTCGAAGGCTACAGAGAAGGTAAAAAAGACACACTCTGGTGGAGGACGTGATGAGGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

333

Amino Acids

36.01

Weight (kDa)

5.56

Isoelectric Point (pI)

15.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AasI GACNNNNNNGTC 1 cut(s) 718
Acc36I ACCTGC 1 cut(s) 431
AciI CCGC 8 cut(s) 50, 75, 318, 515, 591, 765, 815, 869
AcoI YGGCCR 3 cut(s) 60, 88, 816
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 696
AgsI TTSAA 4 cut(s) 9, 235, 670, 880
AjiI CACGTC 1 cut(s) 983
AjnI CCWGG 1 cut(s) 818
AleI CACNNNNGTG 2 cut(s) 488, 972
AluBI AGCT 7 cut(s) 275, 329, 608, 758, 800, 857, 994
AluI AGCT 7 cut(s) 275, 329, 608, 758, 800, 857, 994
Alw26I GTCTC 7 cut(s) 114, 572, 680, 779, 824, 881, 890
AoxI GGCC 8 cut(s) 60, 88, 115, 213, 678, 762, 816, 933
ApeKI GCWGC 7 cut(s) 72, 284, 524, 605, 731, 755, 797
ArsI GACNNNNNNTTYG 2 cut(s) 557, 589
AspLEI GCGC 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 266, 571
BalI TGGCCA 2 cut(s) 62, 90
BbsI GAAGAC 2 cut(s) 311, 629
BbvI GCAGC 7 cut(s) 84, 271, 511, 617, 743, 767, 809
BceAI ACGGC 1 cut(s) 849
BciT130I CCWGG 1 cut(s) 820
BcoDI GTCTC 7 cut(s) 114, 572, 680, 779, 824, 881, 890
BfaI CTAG 1 cut(s) 837
BfmI CTRYAG 2 cut(s) 70, 945
BfuAI ACCTGC 1 cut(s) 431
BglI GCCNNNNNGGC 1 cut(s) 941
BglII AGATCT 1 cut(s) 14
BlpI GCTNAGC 1 cut(s) 858
Bme1390I CCNGG 1 cut(s) 820
BmgBI CACGTC 1 cut(s) 983
BmgT120I GGNCC 1 cut(s) 213
BmrFI CCNGG 1 cut(s) 820
BmsI GCATC 4 cut(s) 271, 535, 604, 718
BpiI GAAGAC 2 cut(s) 311, 629
BpmI CTGGAG 2 cut(s) 345, 846
Bpu10I CCTNAGC 2 cut(s) 609, 759
Bpu1102I GCTNAGC 1 cut(s) 858
BsaI GGTCTC 2 cut(s) 680, 890
BsaJI CCNNGG 3 cut(s) 216, 309, 819
BsaWI WCCGGW 1 cut(s) 911
Bsc4I CCNNNNNNNGG 1 cut(s) 696
Bse118I RCCGGY 1 cut(s) 407
BseBI CCWGG 1 cut(s) 820
BseDI CCNNGG 3 cut(s) 216, 309, 819
BseGI GGATG 3 cut(s) 175, 387, 619
BseLI CCNNNNNNNGG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 849
BseRI GAGGAG 3 cut(s) 122, 143, 677
BseXI GCAGC 7 cut(s) 84, 271, 511, 617, 743, 767, 809
BshFI GGCC 8 cut(s) 62, 90, 117, 215, 680, 764, 818, 935
BsiSI CCGG 2 cut(s) 408, 912
BslI CCNNNNNNNGG 1 cut(s) 696
BsmAI GTCTC 7 cut(s) 114, 572, 680, 779, 824, 881, 890
BsmBI CGTCTC 2 cut(s) 779, 824
BsnI GGCC 8 cut(s) 62, 90, 117, 215, 680, 764, 818, 935
Bso31I GGTCTC 2 cut(s) 680, 890
Bsp143I GATC 1 cut(s) 14
Bsp1720I GCTNAGC 1 cut(s) 858
BspACI CCGC 8 cut(s) 50, 75, 318, 515, 591, 765, 815, 869
BspANI GGCC 8 cut(s) 62, 90, 117, 215, 680, 764, 818, 935
BspCNI CTCAG 1 cut(s) 850
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 431
BspQI GCTCTTC 1 cut(s) 230
BspTNI GGTCTC 2 cut(s) 680, 890
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 216, 309, 819
BssMI GATC 1 cut(s) 14
BssT1I CCWWGG 2 cut(s) 216, 309
Bst2UI CCWGG 1 cut(s) 820
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 5 cut(s) 25, 300, 609, 759, 858
BstF5I GGATG 3 cut(s) 175, 387, 619
BstHHI GCGC 1 cut(s) 425
BstKTI GATC 1 cut(s) 17
BstMAI GTCTC 7 cut(s) 114, 572, 680, 779, 824, 881, 890
BstMBI GATC 1 cut(s) 14
BstNI CCWGG 1 cut(s) 820
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 818
BstSFI CTRYAG 2 cut(s) 70, 945
BstV1I GCAGC 7 cut(s) 84, 271, 511, 617, 743, 767, 809
BstV2I GAAGAC 2 cut(s) 311, 629
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 8 cut(s) 62, 90, 117, 215, 680, 764, 818, 935
BtgZI GCGATG 1 cut(s) 255
BtrI CACGTC 1 cut(s) 983
BtsCI GGATG 3 cut(s) 175, 387, 619
BtsI GCAGTG 2 cut(s) 51, 432
BtsIMutI CAGTG 2 cut(s) 51, 432
BveI ACCTGC 1 cut(s) 431
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 425
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 213
Csp6I GTAC 1 cut(s) 261
CviAII CATG 3 cut(s) 94, 248, 391
CviQI GTAC 1 cut(s) 261
DdeI CTNAG 5 cut(s) 25, 300, 609, 759, 858
DpnI GATC 1 cut(s) 16
DpnII GATC 1 cut(s) 14
DrdI GACNNNNNNGTC 1 cut(s) 718
DseDI GACNNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 3 cut(s) 60, 88, 816
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 2 cut(s) 216, 309
Eco147I AGGCCT 2 cut(s) 680, 935
Eco31I GGTCTC 2 cut(s) 680, 890
Eco32I GATATC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 818
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 2 cut(s) 216, 309
ErhI CCWWGG 2 cut(s) 216, 309
Esp3I CGTCTC 2 cut(s) 779, 824
FaeI CATG 3 cut(s) 97, 251, 394
FatI CATG 3 cut(s) 93, 247, 390
FauI CCCGC 1 cut(s) 862
FauNDI CATATG 2 cut(s) 541, 748
FokI GGATG 3 cut(s) 182, 394, 626
FspBI CTAG 1 cut(s) 837
GlaI GCGC 1 cut(s) 424
GsuI CTGGAG 2 cut(s) 345, 846
HaeIII GGCC 8 cut(s) 62, 90, 117, 215, 680, 764, 818, 935
HapII CCGG 2 cut(s) 408, 912
HhaI GCGC 1 cut(s) 425
Hin1II CATG 3 cut(s) 97, 251, 394
Hin6I GCGC 1 cut(s) 423
HinP1I GCGC 1 cut(s) 423
HindIII AAGCTT 1 cut(s) 273
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 408, 912
HphI GGTGA 2 cut(s) 266, 571
Hpy166II GTNNAC 2 cut(s) 135, 723
Hpy188I TCNGA 2 cut(s) 196, 280
Hpy188III TCNNGA 2 cut(s) 324, 484
Hpy8I GTNNAC 2 cut(s) 135, 723
Hpy99I CGWCG 2 cut(s) 106, 346
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 982
HpyCH4V TGCA 4 cut(s) 72, 527, 731, 797
HpyF3I CTNAG 5 cut(s) 25, 300, 609, 759, 858
HpySE526I ACGT 1 cut(s) 982
Hsp92II CATG 3 cut(s) 97, 251, 394
HspAI GCGC 1 cut(s) 423
Kzo9I GATC 1 cut(s) 14
LguI GCTCTTC 1 cut(s) 230
LmnI GCTCC 2 cut(s) 326, 991
Lsp1109I GCAGC 7 cut(s) 84, 271, 511, 617, 743, 767, 809
LweI GCATC 4 cut(s) 271, 535, 604, 718
MaeI CTAG 1 cut(s) 837
MaeII ACGT 1 cut(s) 982
MalI GATC 1 cut(s) 16
MboI GATC 1 cut(s) 14
MboII GAAGA 3 cut(s) 247, 316, 634
MflI RGATCY 1 cut(s) 14
MlsI TGGCCA 2 cut(s) 62, 90
MluCI AATT 1 cut(s) 225
MluNI TGGCCA 2 cut(s) 62, 90
MlyI GAGTC 1 cut(s) 206
Mox20I TGGCCA 2 cut(s) 62, 90
MscI TGGCCA 2 cut(s) 62, 90
MslI CAYNNNNRTG 3 cut(s) 252, 488, 972
Msp20I TGGCCA 2 cut(s) 62, 90
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 2 cut(s) 408, 912
MspR9I CCNGG 1 cut(s) 820
MvaI CCWGG 1 cut(s) 820
NdeI CATATG 2 cut(s) 541, 748
NdeII GATC 1 cut(s) 14
NlaIII CATG 3 cut(s) 97, 251, 394
NmeAIII GCCGAG 2 cut(s) 143, 643
NspI RCATGY 1 cut(s) 97
OliI CACNNNNGTG 2 cut(s) 488, 972
PceI AGGCCT 2 cut(s) 680, 935
PciSI GCTCTTC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 491
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PsiI TTATAA 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 818
PspGI CCWGG 1 cut(s) 818
PspPI GGNCC 1 cut(s) 213
PsrI GAACNNNNNNTAC 2 cut(s) 175, 207
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 14
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
RseI CAYNNNNRTG 3 cut(s) 252, 488, 972
SapI GCTCTTC 1 cut(s) 230
Sau3AI GATC 1 cut(s) 14
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 820
SfaNI GCATC 4 cut(s) 271, 535, 604, 718
SfcI CTRYAG 2 cut(s) 70, 945
SmiMI CAYNNNNRTG 3 cut(s) 252, 488, 972
Sse9I AATT 1 cut(s) 225
SseBI AGGCCT 2 cut(s) 680, 935
SsiI CCGC 8 cut(s) 50, 75, 318, 515, 591, 765, 815, 869
SspMI CTAG 1 cut(s) 837
StuI AGGCCT 2 cut(s) 680, 935
StyD4I CCNGG 1 cut(s) 818
StyI CCWWGG 2 cut(s) 216, 309
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 985
TaqI TCGA 3 cut(s) 101, 341, 938
TasI AATT 1 cut(s) 225
TauI GCSGC 3 cut(s) 593, 767, 818
TscAI CASTG 2 cut(s) 51, 432
TseI GCWGC 7 cut(s) 72, 284, 524, 605, 731, 755, 797
TspDTI ATGAA 2 cut(s) 398, 525
TspGWI ACGGA 2 cut(s) 119, 359
TspRI CASTG 2 cut(s) 51, 432
XceI RCATGY 1 cut(s) 97
XspI CTAG 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.