RchiOBHm_Chr4g0427611

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016825
Physical Location & Seq
Reverse (-)
52812961 .. 52814425
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39652

Sequence Viewer

Length: 891 bp
ATGGCTTCAAATAGATCTTATTACATAGTGCTCTTAGTTATAGCGGTTGCTATTATGCTGGCCAACCTCTGCAGCGGTTCTGGGGTTGGCCACATACCGTCGACGGAGGAGGAAGGCCGAGACTTTGAGGATTTTAATGACAAGACGGGGAAGGCGAAGGTGGTGGAGGTAGAGGAGAAAGGTGGTAAAGAAGGTTCAGAGTCATGGAGTGAATGGGCCAAGGAGAAAATTGGGTTGAAGCACGATGAGCGTGACGGGGATAGTACCATTAAGAAAGCTTCTGATGCTACGTATGATGCTGCCAAGAAGACCAAGGACACCGCATCTGGAACTGGTCAATACGCAACGGAAAAGGCTAGAGAGGCGGCAGAGAATGCGAACGAGATGAAAGATACGGCTGCAGAGAAAGCTGGTAAGACAGTTGGTACAGTGAAGGAGAAGGCAGGTGAGACGATTGGGTATGCAAAAGACAAGGCTTATGATATCACAAATGCAGCGATAGATAAAACCTATGAAACTGCGAATGCAGCAAAGGAGATGGCCTATGATGCTGCAAAGGCGGCAAAGGACAAGACTTTCCAGACTACAAGTTCAGCTAAAGAAAAGGCCGCCAAGGCTGCCAAGAAGACTAATGAGGCAGAGGAAAAAGGGAAGAAAGAGGCAGAGGAGTTGAAGGAGAAGGCCTATGAAACCACTTCTCAAACCAAAAATGCAGCAAAAGATAAGGCCTCAAAGGCTGCAGAGAAGGCCAGTGAGGCAACGGAAGAGGTAAAGGGAAAGGCTTATGAGACCGCAAATACAGCTAAAGACACCATTTCTGAAGCTACCGGGCAGCAGTCAGAGAAGATCAAAAAGACAATGTCTGGTCGAGGACGCGATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

296

Amino Acids

31.78

Weight (kDa)

5.66

Isoelectric Point (pI)

24.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 434
Acc36I ACCTGC 1 cut(s) 434
AccI GTMKAC 1 cut(s) 101
AccII CGCG 1 cut(s) 876
AciI CCGC 7 cut(s) 44, 75, 321, 365, 560, 609, 792
AcoI YGGCCR 2 cut(s) 60, 88
AcuI CTGAAG 1 cut(s) 840
AfaI GTAC 2 cut(s) 265, 427
AgsI TTSAA 3 cut(s) 9, 238, 673
AluBI AGCT 6 cut(s) 278, 410, 596, 803, 824, 886
AluI AGCT 6 cut(s) 278, 410, 596, 803, 824, 886
Alw21I GWGCWC 2 cut(s) 33, 888
Alw26I GTCTC 3 cut(s) 114, 443, 782
AoxI GGCC 9 cut(s) 60, 88, 115, 216, 540, 606, 681, 726, 747
AspS9I GGNCC 1 cut(s) 216
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 1 cut(s) 458
BalI TGGCCA 2 cut(s) 62, 90
BanII GRGCYC 1 cut(s) 888
BbsI GAAGAC 2 cut(s) 314, 632
Bbv12I GWGCWC 2 cut(s) 33, 888
BccI CCATC 1 cut(s) 532
BceAI ACGGC 1 cut(s) 411
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 114, 443, 782
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 3 cut(s) 70, 399, 738
BfuAI ACCTGC 1 cut(s) 434
BglI GCCNNNNNGGC 3 cut(s) 614, 734, 755
BglII AGATCT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 829
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 829
BmsI GCATC 4 cut(s) 274, 286, 332, 538
BpiI GAAGAC 2 cut(s) 314, 632
BpuMI CCSGG 1 cut(s) 829
BsaAI YACGTR 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 3 cut(s) 219, 312, 612
Bse1I ACTGG 2 cut(s) 337, 750
BseDI CCNNGG 3 cut(s) 219, 312, 612
BseNI ACTGG 2 cut(s) 337, 750
BseRI GAGGAG 3 cut(s) 122, 188, 680
Bsh1236I CGCG 1 cut(s) 876
BshFI GGCC 9 cut(s) 62, 90, 117, 218, 542, 608, 683, 728, 749
BsiHKAI GWGCWC 2 cut(s) 33, 888
BsiSI CCGG 1 cut(s) 828
BsmAI GTCTC 3 cut(s) 114, 443, 782
BsmBI CGTCTC 1 cut(s) 443
BsmI GAATGC 2 cut(s) 379, 529
BsnI GGCC 9 cut(s) 62, 90, 117, 218, 542, 608, 683, 728, 749
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 2 cut(s) 33, 888
Bsp143I GATC 2 cut(s) 14, 846
BspACI CCGC 7 cut(s) 44, 75, 321, 365, 560, 609, 792
BspANI GGCC 9 cut(s) 62, 90, 117, 218, 542, 608, 683, 728, 749
BspFNI CGCG 1 cut(s) 876
BspMAI CTGCAG 3 cut(s) 74, 403, 742
BspMI ACCTGC 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 876
BspTNI GGTCTC 1 cut(s) 782
BsrI ACTGG 2 cut(s) 337, 750
BssECI CCNNGG 3 cut(s) 219, 312, 612
BssMI GATC 2 cut(s) 14, 846
BssT1I CCWWGG 3 cut(s) 219, 312, 612
Bst4CI ACNGT 3 cut(s) 99, 421, 430
Bst6I CTCTTC 2 cut(s) 759, 876
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 291
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 876
BstKTI GATC 2 cut(s) 17, 849
BstMAI GTCTC 3 cut(s) 114, 443, 782
BstMBI GATC 2 cut(s) 14, 846
BstSCI CCNGG 1 cut(s) 827
BstSFI CTRYAG 3 cut(s) 70, 399, 738
BstSNI TACGTA 1 cut(s) 291
BstUI CGCG 1 cut(s) 876
BstV2I GAAGAC 2 cut(s) 314, 632
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 9 cut(s) 62, 90, 117, 218, 542, 608, 683, 728, 749
BtsIMutI CAGTG 2 cut(s) 435, 757
BveI ACCTGC 1 cut(s) 434
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 882
Csp6I GTAC 2 cut(s) 264, 426
CviAII CATG 1 cut(s) 204
CviQI GTAC 2 cut(s) 264, 426
DdeI CTNAG 1 cut(s) 34
DpnI GATC 2 cut(s) 16, 848
DpnII GATC 2 cut(s) 14, 846
EaeI YGGCCR 2 cut(s) 60, 88
Eam1104I CTCTTC 2 cut(s) 759, 876
EarI CTCTTC 2 cut(s) 759, 876
Ecl136II GAGCTC 1 cut(s) 886
Eco105I TACGTA 1 cut(s) 291
Eco130I CCWWGG 3 cut(s) 219, 312, 612
Eco147I AGGCCT 2 cut(s) 683, 728
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 1 cut(s) 782
Eco32I GATATC 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 886
Eco57I CTGAAG 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 886
EcoRV GATATC 1 cut(s) 484
EcoT14I CCWWGG 3 cut(s) 219, 312, 612
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 3 cut(s) 219, 312, 612
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 1 cut(s) 207
FatI CATG 1 cut(s) 203
FblI GTMKAC 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 888
FspBI CTAG 1 cut(s) 357
HaeIII GGCC 9 cut(s) 62, 90, 117, 218, 542, 608, 683, 728, 749
HapII CCGG 1 cut(s) 828
HgaI GACGC 1 cut(s) 882
Hin1II CATG 1 cut(s) 207
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 1 cut(s) 200
HpaII CCGG 1 cut(s) 828
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 5 cut(s) 199, 283, 820, 841, 890
Hpy188III TCNNGA 2 cut(s) 327, 580
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 2 cut(s) 103, 106
HpyAV CCTTC 9 cut(s) 107, 145, 151, 185, 427, 433, 667, 673, 739
HpyCH4III ACNGT 3 cut(s) 99, 421, 430
HpyCH4IV ACGT 1 cut(s) 290
HpyCH4V TGCA 8 cut(s) 72, 401, 464, 494, 527, 554, 713, 740
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 290
Hsp92II CATG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 14, 846
LguI GCTCTTC 1 cut(s) 876
LweI GCATC 4 cut(s) 274, 286, 332, 538
MaeI CTAG 1 cut(s) 357
MaeII ACGT 1 cut(s) 290
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 16, 848
MboI GATC 2 cut(s) 14, 846
MboII GAAGA 5 cut(s) 319, 637, 664, 776, 856
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 33, 888
MlsI TGGCCA 2 cut(s) 62, 90
MluCI AATT 1 cut(s) 228
MluNI TGGCCA 2 cut(s) 62, 90
MlyI GAGTC 1 cut(s) 209
Mox20I TGGCCA 2 cut(s) 62, 90
MscI TGGCCA 2 cut(s) 62, 90
MseI TTAA 2 cut(s) 135, 270
Msp20I TGGCCA 2 cut(s) 62, 90
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 1 cut(s) 829
Mva1269I GAATGC 2 cut(s) 379, 529
MvnI CGCG 1 cut(s) 876
NciI CCSGG 1 cut(s) 829
NdeII GATC 2 cut(s) 14, 846
NlaIII CATG 1 cut(s) 207
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 251
PaqCI CACCTGC 1 cut(s) 434
PceI AGGCCT 2 cut(s) 683, 728
PciSI GCTCTTC 1 cut(s) 876
PcsI WCGNNNNNNNCGW 1 cut(s) 152
PctI GAATGC 2 cut(s) 379, 529
PflFI GACNNNGTC 1 cut(s) 859
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 888
PspPI GGNCC 1 cut(s) 216
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstI CTGCAG 3 cut(s) 74, 403, 742
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 859
RsaI GTAC 2 cut(s) 265, 427
RsaNI GTAC 2 cut(s) 264, 426
SacI GAGCTC 1 cut(s) 888
SalI GTCGAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 876
SaqAI TTAA 2 cut(s) 135, 270
Sau3AI GATC 2 cut(s) 14, 846
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 829
SduI GDGCHC 2 cut(s) 33, 888
SfaNI GCATC 4 cut(s) 274, 286, 332, 538
SfcI CTRYAG 3 cut(s) 70, 399, 738
SgrDI CGTCGACG 1 cut(s) 100
SnaBI TACGTA 1 cut(s) 291
Sse9I AATT 1 cut(s) 228
SseBI AGGCCT 2 cut(s) 683, 728
SsiI CCGC 7 cut(s) 44, 75, 321, 365, 560, 609, 792
SspMI CTAG 1 cut(s) 357
SstI GAGCTC 1 cut(s) 888
StuI AGGCCT 2 cut(s) 683, 728
StyD4I CCNGG 1 cut(s) 827
StyI CCWWGG 3 cut(s) 219, 312, 612
TaaI ACNGT 3 cut(s) 99, 421, 430
TaiI ACGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 101, 868
TasI AATT 1 cut(s) 228
TauI GCSGC 3 cut(s) 368, 563, 611
Tru1I TTAA 2 cut(s) 135, 270
Tru9I TTAA 2 cut(s) 135, 270
TscAI CASTG 2 cut(s) 435, 757
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 3 cut(s) 401, 528, 702
TspGWI ACGGA 3 cut(s) 119, 362, 776
TspRI CASTG 2 cut(s) 435, 757
Tth111I GACNNNGTC 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.