Rw4G023870

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016825
Physical Location & Seq
Reverse (-)
49633407 .. 49634594
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023870.1

Sequence Viewer

Length: 858 bp
ATGGCTTCAAATAGATCTTATTACATAGTGCTCTTAGTTATAGCGGTTGCTATTATGCTGGCCAACCTCTGCAGCGGTTCTGGGGTTGGCCACATACCGTCGACGGAGGAGGAAGGCCGAGACTTTGAGGAGTTTAATGACAAGACGGGGAAGGCAAGGTGGTGGAGGTGGAGGTGGAGGAGAAAGGTGGAGAAAATTGGGTTGAAGCACGATGAGCATGACGGGGATAGTACCATTAAGAAAGCTTCTGATGCTACGTATGATGCTGCCAAGAAGACCAAGGACACCGCATCTGGAACTGGTCAATACGCAACGGAAAAGGCTAGAGAGGCGGCAGAGAATGCGAACGAGATGAAAGATACGGCTGCAGGGAAAACTGGTAAGACAGTTGGTGCAGTGAAGGGGAAGGCAGGTGAGACGATTGGGTATGCAAAAGACAAGGCTTATGATATCACAAATGCAGCGATAGATAAAACCTATGAAACTGCGAATGCAGCAAAGGAGATGGCCTATGATGCTGCAAAGGCGGCAAAGGACAAGACTTTCCAGACTACAAGTTCAGCTAAAGAAAAGGCCGCCAAGGCTGCCGAGAAGACTAATGAGGCAGAGGAAAAAGGGAAGAAAGAGGCAGAGGAGTTGAAGGAGAAGGCCCATGAAACCACTTCTCAAACCAAAAATGCAGCAAAAGATAAGGCCTCAAAGGCTGCAGAGAAGGCCAGTGAGGCAACGGAAGAGGTAAAGGGAAAGGCTTATGAGACCGCAAATACAGCTAAAGACACCATTTCTGAAGCTACCGGGCAGCAGTCGGAGAAGATCAAAAAGACAGTGTCTGGTCGAGGACGCGATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

285

Amino Acids

30.87

Weight (kDa)

8.55

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 401
Acc36I ACCTGC 1 cut(s) 401
AccI GTMKAC 1 cut(s) 101
AccII CGCG 1 cut(s) 843
AciI CCGC 7 cut(s) 44, 75, 288, 332, 527, 576, 759
AcoI YGGCCR 2 cut(s) 60, 88
AcuI CTGAAG 1 cut(s) 807
AfaI GTAC 1 cut(s) 232
AgsI TTSAA 3 cut(s) 9, 205, 640
AluBI AGCT 5 cut(s) 245, 563, 770, 791, 853
AluI AGCT 5 cut(s) 245, 563, 770, 791, 853
Alw21I GWGCWC 2 cut(s) 33, 855
Alw26I GTCTC 3 cut(s) 114, 410, 749
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 8 cut(s) 60, 88, 115, 507, 573, 648, 693, 714
AspS9I GGNCC 1 cut(s) 649
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 425
BalI TGGCCA 2 cut(s) 62, 90
BanII GRGCYC 1 cut(s) 855
BbsI GAAGAC 2 cut(s) 281, 599
Bbv12I GWGCWC 2 cut(s) 33, 855
BccI CCATC 1 cut(s) 499
BceAI ACGGC 1 cut(s) 378
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 3 cut(s) 114, 410, 749
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 3 cut(s) 70, 366, 705
BfuAI ACCTGC 1 cut(s) 401
BglI GCCNNNNNGGC 3 cut(s) 581, 701, 722
BglII AGATCT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 796
BmgT120I GGNCC 1 cut(s) 649
BmrFI CCNGG 1 cut(s) 796
BmsI GCATC 4 cut(s) 241, 253, 299, 505
BpiI GAAGAC 2 cut(s) 281, 599
BpuMI CCSGG 1 cut(s) 796
BsaAI YACGTR 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 749
BsaJI CCNNGG 2 cut(s) 279, 579
Bse1I ACTGG 3 cut(s) 304, 382, 717
BseDI CCNNGG 2 cut(s) 279, 579
BseNI ACTGG 3 cut(s) 304, 382, 717
BseRI GAGGAG 4 cut(s) 122, 143, 193, 647
BsgI GTGCAG 1 cut(s) 414
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 8 cut(s) 62, 90, 117, 509, 575, 650, 695, 716
BsiHKAI GWGCWC 2 cut(s) 33, 855
BsiSI CCGG 1 cut(s) 795
BsmAI GTCTC 3 cut(s) 114, 410, 749
BsmBI CGTCTC 1 cut(s) 410
BsmI GAATGC 2 cut(s) 346, 496
BsnI GGCC 8 cut(s) 62, 90, 117, 509, 575, 650, 695, 716
Bso31I GGTCTC 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 33, 855
Bsp143I GATC 2 cut(s) 14, 813
BspACI CCGC 7 cut(s) 44, 75, 288, 332, 527, 576, 759
BspANI GGCC 8 cut(s) 62, 90, 117, 509, 575, 650, 695, 716
BspFNI CGCG 1 cut(s) 843
BspMAI CTGCAG 3 cut(s) 74, 370, 709
BspMI ACCTGC 1 cut(s) 401
BspQI GCTCTTC 1 cut(s) 843
BspTNI GGTCTC 1 cut(s) 749
BsrI ACTGG 3 cut(s) 304, 382, 717
BssECI CCNNGG 2 cut(s) 279, 579
BssMI GATC 2 cut(s) 14, 813
BssT1I CCWWGG 2 cut(s) 279, 579
Bst4CI ACNGT 3 cut(s) 99, 388, 826
Bst6I CTCTTC 2 cut(s) 726, 843
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBAI YACGTR 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 2 cut(s) 17, 816
BstMAI GTCTC 3 cut(s) 114, 410, 749
BstMBI GATC 2 cut(s) 14, 813
BstSCI CCNGG 1 cut(s) 794
BstSFI CTRYAG 3 cut(s) 70, 366, 705
BstSNI TACGTA 1 cut(s) 258
BstUI CGCG 1 cut(s) 843
BstV2I GAAGAC 2 cut(s) 281, 599
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 8 cut(s) 62, 90, 117, 509, 575, 650, 695, 716
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 3 cut(s) 402, 724, 831
BveI ACCTGC 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 830
Cfr13I GGNCC 1 cut(s) 649
CseI GACGC 1 cut(s) 849
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 218, 653
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 34
DpnI GATC 2 cut(s) 16, 815
DpnII GATC 2 cut(s) 14, 813
EaeI YGGCCR 2 cut(s) 60, 88
Eam1104I CTCTTC 2 cut(s) 726, 843
EarI CTCTTC 2 cut(s) 726, 843
Ecl136II GAGCTC 1 cut(s) 853
Eco105I TACGTA 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 279, 579
Eco147I AGGCCT 1 cut(s) 695
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 749
Eco32I GATATC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 807
EcoICRI GAGCTC 1 cut(s) 853
EcoRV GATATC 1 cut(s) 451
EcoT14I CCWWGG 2 cut(s) 279, 579
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 2 cut(s) 279, 579
Esp3I CGTCTC 1 cut(s) 410
FaeI CATG 2 cut(s) 221, 656
FatI CATG 2 cut(s) 217, 652
FblI GTMKAC 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 855
FspBI CTAG 1 cut(s) 324
HaeIII GGCC 8 cut(s) 62, 90, 117, 509, 575, 650, 695, 716
HapII CCGG 1 cut(s) 795
HgaI GACGC 1 cut(s) 849
Hin1II CATG 2 cut(s) 221, 656
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 243
HpaII CCGG 1 cut(s) 795
HphI GGTGA 1 cut(s) 425
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 4 cut(s) 250, 787, 808, 857
Hpy188III TCNNGA 2 cut(s) 294, 547
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 2 cut(s) 103, 106
HpyAV CCTTC 7 cut(s) 107, 145, 394, 400, 634, 640, 706
HpyCH4III ACNGT 3 cut(s) 99, 388, 826
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 9 cut(s) 72, 368, 395, 431, 461, 494, 521, 680, 707
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 257
Hsp92II CATG 2 cut(s) 221, 656
Kzo9I GATC 2 cut(s) 14, 813
LguI GCTCTTC 1 cut(s) 843
LweI GCATC 4 cut(s) 241, 253, 299, 505
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 257
MalI GATC 2 cut(s) 16, 815
MboI GATC 2 cut(s) 14, 813
MboII GAAGA 5 cut(s) 286, 604, 631, 743, 823
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 33, 855
MlsI TGGCCA 2 cut(s) 62, 90
MluCI AATT 1 cut(s) 195
MluNI TGGCCA 2 cut(s) 62, 90
MmeI TCCRAC 1 cut(s) 786
Mox20I TGGCCA 2 cut(s) 62, 90
MscI TGGCCA 2 cut(s) 62, 90
MseI TTAA 2 cut(s) 135, 237
Msp20I TGGCCA 2 cut(s) 62, 90
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 1 cut(s) 795
MspR9I CCNGG 1 cut(s) 796
Mva1269I GAATGC 2 cut(s) 346, 496
MvnI CGCG 1 cut(s) 843
NciI CCSGG 1 cut(s) 796
NdeII GATC 2 cut(s) 14, 813
NlaIII CATG 2 cut(s) 221, 656
NmeAIII GCCGAG 2 cut(s) 143, 613
PaqCI CACCTGC 1 cut(s) 401
PceI AGGCCT 1 cut(s) 695
PciSI GCTCTTC 1 cut(s) 843
PctI GAATGC 2 cut(s) 346, 496
PflFI GACNNNGTC 1 cut(s) 826
Ppu21I YACGTR 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 855
PspPI GGNCC 1 cut(s) 649
PstI CTGCAG 3 cut(s) 74, 370, 709
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 826
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
SacI GAGCTC 1 cut(s) 855
SalI GTCGAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 843
SaqAI TTAA 2 cut(s) 135, 237
Sau3AI GATC 2 cut(s) 14, 813
Sau96I GGNCC 1 cut(s) 649
ScrFI CCNGG 1 cut(s) 796
SduI GDGCHC 2 cut(s) 33, 855
SfaNI GCATC 4 cut(s) 241, 253, 299, 505
SfcI CTRYAG 3 cut(s) 70, 366, 705
SgrDI CGTCGACG 1 cut(s) 100
SnaBI TACGTA 1 cut(s) 258
Sse9I AATT 1 cut(s) 195
SseBI AGGCCT 1 cut(s) 695
SsiI CCGC 7 cut(s) 44, 75, 288, 332, 527, 576, 759
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 855
StuI AGGCCT 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 794
StyI CCWWGG 2 cut(s) 279, 579
TaaI ACNGT 3 cut(s) 99, 388, 826
TaiI ACGT 1 cut(s) 260
TaqI TCGA 2 cut(s) 101, 835
TasI AATT 1 cut(s) 195
TauI GCSGC 3 cut(s) 335, 530, 578
Tru1I TTAA 2 cut(s) 135, 237
Tru9I TTAA 2 cut(s) 135, 237
TscAI CASTG 3 cut(s) 402, 724, 831
TspDTI ATGAA 3 cut(s) 368, 495, 669
TspGWI ACGGA 3 cut(s) 119, 329, 743
TspRI CASTG 3 cut(s) 402, 724, 831
Tth111I GACNNNGTC 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.