MD13G1140000.v1.1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016825
Physical Location & Seq
Reverse (-)
10781995 .. 10784600
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1140000.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGGGTGCAAAGCAATCTTACAAACTACTCCTTGTCATTGCGGTGGCGGTGGTGGTGATGCTTGCCACCGTATGCCGCGGCTCCAGCGTGGGGCATACGCCGTCTGCGAACGAGGAAGTTCTTGATGAGTTTGTGGAGTTTAAGGACCAGTCAAGGCAGACGGATGACGCGAGGGCGGCGGAGAAGGCGAGAGAGGGTAAAGAAGGGTCGGAGTCGTGGACGGAGTGGGCTAAAGAGAAAATCACCGGAGGACTTGGGCTGAAGCAGGATGATGAGAATTTTTTGAAGGATAGTTCTAAGAAGGCTTCTGATGCTACTTATGACACTGCTTCTGGGGCTGGTGAGTATAGCACAGAAAAGGCTAGACACATTAAAGATAAAGCCGCCGAGAAGGCCGGCAAGACGATGGATGCAGCAATGGAGAAGGTGTATGAGGCCTCTAAATCGGCCAAAGACATGACTTACGATGCTGCTAATGCCGCAAAGGAGAAGGCCTATGAGGCCATTAATGCGGCTTATGAGACCACAAAGTCAGCAAAAGACGAGGCTTATGAGGCTACGAAGGAAAAGACTTATGATACTGCAGAGGCAGCGAAGGAAAAGGCTTATGAGGCGGCGAAGGCGGCTAAGGAAAAGACTTACGATACGGCGGGTGCAGCTAAGGAGAAGGCTTATGAGGCCACAAAGGCAGCGACGGACAAGACTTCTGATACGGCAGGTGCAGCGAAGGAGAAGGCATACGAGGCCACAAAGGCGGCAAAAGGCAAGACATATCAGACCAAGAATGCAGCTGAGGAGGCTACAAAGGCGGCGAAAGATAGAACATATGAGACGAAGAACGCAGCTGAGGAGACGGCCCGAAGAACAGCAGAGAAAGCGAATGAGGCTACCGGTTACACGGCAGAGAAAGCAAGAGAAGCGAAAGAAAAAGCAGCGCAAACGGCAGAGGAGGTGAAGAACAAGGCTTATGAGAAAGCAGAGGAGACTAAAGAGGCAAAGGAGAAGGCGAAGCAGACGGCACAGGAGGTGAAGGACAAGGCTGCTCTGAAGGCCGAGGAGGCGAAGCGGGCAAGTGAGGAGACGGGAAGGAATGCTGCGGAGGAGGGGAAGTGGAAGGAGTCGGAGACGGAGGAACAAACGAGTTGGGCGAAGGAGAAAGCCAAGGAGGGTCTTGAGGCAGCCAAGAATAAGGCGGAGGAGGCGGTGAAGCCAGCCAAGGACACCGTGGCGTCTAGCCACGAGGCTTCCAAACAGAAGTCCCAGAAGATTAAGGACGAAGTTGCTGGCCGCGGCCGTGACGAGGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

437

Amino Acids

47.29

Weight (kDa)

5.7

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_4 PF02987 298 - 331 8.4e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 707
AasI GACNNNNNNGTC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 707
AccII CGCG 3 cut(s) 78, 170, 1290
AcoI YGGCCR 3 cut(s) 447, 1285, 1291
AcsI RAATTY 1 cut(s) 277
AcuI CTGAAG 2 cut(s) 281, 1067
AcyI GRCGYC 1 cut(s) 1229
AfiI CCNNNNNNNGG 2 cut(s) 90, 1300
AgeI ACCGGT 1 cut(s) 890
AgsI TTSAA 1 cut(s) 286
AluBI AGCT 4 cut(s) 659, 791, 845, 1306
AluI AGCT 4 cut(s) 659, 791, 845, 1306
Alw21I GWGCWC 1 cut(s) 1308
Alw26I GTCTC 6 cut(s) 515, 824, 845, 977, 1073, 1118
ApoI RAATTY 1 cut(s) 277
AseI ATTAAT 1 cut(s) 507
AsiGI ACCGGT 1 cut(s) 890
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 2 cut(s) 145, 856
AsuHPI GGTGA 6 cut(s) 67, 235, 353, 964, 1039, 1216
AvaII GGWCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 1308
BauI CACGAG 1 cut(s) 1238
Bbv12I GWGCWC 1 cut(s) 1308
BbvCI CCTCAGC 2 cut(s) 792, 846
BccI CCATC 1 cut(s) 400
BceAI ACGGC 8 cut(s) 85, 663, 729, 870, 915, 957, 1032, 1278
BcoDI GTCTC 6 cut(s) 515, 824, 845, 977, 1073, 1118
BfaI CTAG 2 cut(s) 363, 1233
BfmI CTRYAG 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 707
BglI GCCNNNNNGGC 5 cut(s) 392, 500, 686, 752, 1058
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 2 cut(s) 145, 856
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 4 cut(s) 48, 301, 400, 457
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 4 cut(s) 627, 660, 792, 846
BpuEI CTTGAG 1 cut(s) 1193
BsaHI GRCGYC 1 cut(s) 1229
BsaI GGTCTC 1 cut(s) 515
BsaJI CCNNGG 6 cut(s) 76, 1053, 1161, 1215, 1224, 1288
BsaWI WCCGGW 2 cut(s) 245, 890
BsaXI ACNNNNNCTCC 4 cut(s) 413, 443, 1094, 1124
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 1300
Bse118I RCCGGY 2 cut(s) 395, 890
Bse1I ACTGG 1 cut(s) 148
Bse3DI GCAATG 2 cut(s) 36, 423
BseDI CCNNGG 6 cut(s) 76, 1053, 1161, 1215, 1224, 1288
BseGI GGATG 3 cut(s) 169, 274, 415
BseLI CCNNNNNNNGG 2 cut(s) 90, 1300
BseMI GCAATG 2 cut(s) 36, 423
BseMII CTCAG 2 cut(s) 783, 837
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 8 cut(s) 809, 863, 962, 995, 1070, 1091, 1115, 1211
BseX3I CGGCCG 1 cut(s) 1291
BsgI GTGCAG 2 cut(s) 675, 741
Bsh1236I CGCG 3 cut(s) 78, 170, 1290
Bsh1285I CGRYCG 1 cut(s) 1294
BshTI ACCGGT 1 cut(s) 890
BsiEI CGRYCG 1 cut(s) 1294
BsiHKAI GWGCWC 1 cut(s) 1308
BsiSI CCGG 3 cut(s) 246, 396, 891
BslFI GGGAC 1 cut(s) 1243
BslI CCNNNNNNNGG 2 cut(s) 90, 1300
BsmAI GTCTC 6 cut(s) 515, 824, 845, 977, 1073, 1118
BsmBI CGTCTC 4 cut(s) 824, 845, 1073, 1118
BsmFI GGGAC 1 cut(s) 1243
BsmI GAATGC 2 cut(s) 790, 1096
Bso31I GGTCTC 1 cut(s) 515
Bsp1286I GDGCHC 1 cut(s) 1308
BspCNI CTCAG 2 cut(s) 784, 838
BspFNI CGCG 3 cut(s) 78, 170, 1290
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 586
BspMI ACCTGC 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 36, 423
BsrFI RCCGGY 2 cut(s) 395, 890
BsrI ACTGG 1 cut(s) 148
BssAI RCCGGY 2 cut(s) 395, 890
BssECI CCNNGG 6 cut(s) 76, 1053, 1161, 1215, 1224, 1288
BssNI GRCGYC 1 cut(s) 1229
BssSI CACGAG 1 cut(s) 1238
BssT1I CCWWGG 2 cut(s) 1161, 1215
Bst2BI CACGAG 1 cut(s) 1238
Bst4CI ACNGT 2 cut(s) 70, 1225
BstACI GRCGYC 1 cut(s) 1229
BstC8I GCNNGC 5 cut(s) 63, 397, 1068, 1212, 1285
BstDEI CTNAG 5 cut(s) 297, 627, 660, 792, 846
BstDSI CCRYGG 3 cut(s) 76, 1224, 1288
BstF5I GGATG 3 cut(s) 169, 274, 415
BstFNI CGCG 3 cut(s) 78, 170, 1290
BstHHI GCGC 1 cut(s) 937
BstMAI GTCTC 6 cut(s) 515, 824, 845, 977, 1073, 1118
BstMCI CGRYCG 1 cut(s) 1294
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 3 cut(s) 78, 170, 1290
BstZI CGGCCG 1 cut(s) 1291
BtgI CCRYGG 3 cut(s) 76, 1224, 1288
BtsCI GGATG 3 cut(s) 169, 274, 415
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
BveI ACCTGC 1 cut(s) 707
Cac8I GCNNGC 5 cut(s) 63, 397, 1068, 1212, 1285
CfoI GCGC 1 cut(s) 937
Cfr10I RCCGGY 2 cut(s) 395, 890
Cfr13I GGNCC 2 cut(s) 145, 856
Cfr42I CCGCGG 2 cut(s) 79, 1291
CseI GACGC 2 cut(s) 176, 1218
CspAI ACCGGT 1 cut(s) 890
CviAII CATG 1 cut(s) 457
DdeI CTNAG 5 cut(s) 297, 627, 660, 792, 846
DrdI GACNNNNNNGTC 1 cut(s) 529
DseDI GACNNNNNNGTC 1 cut(s) 529
EaeI YGGCCR 3 cut(s) 447, 1285, 1291
EagI CGGCCG 1 cut(s) 1291
EciI GGCGGA 2 cut(s) 194, 1208
Ecl136II GAGCTC 1 cut(s) 1306
EclXI CGGCCG 1 cut(s) 1291
Eco130I CCWWGG 2 cut(s) 1161, 1215
Eco147I AGGCCT 2 cut(s) 437, 494
Eco24I GRGCYC 1 cut(s) 1308
Eco31I GGTCTC 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 1291
Eco53kI GAGCTC 1 cut(s) 1306
Eco57I CTGAAG 2 cut(s) 281, 1067
EcoICRI GAGCTC 1 cut(s) 1306
EcoT14I CCWWGG 2 cut(s) 1161, 1215
EcoT38I GRGCYC 1 cut(s) 1308
ErhI CCWWGG 2 cut(s) 1161, 1215
Esp3I CGTCTC 4 cut(s) 824, 845, 1073, 1118
FaeI CATG 1 cut(s) 460
FaqI GGGAC 1 cut(s) 1243
FatI CATG 1 cut(s) 456
FauI CCCGC 2 cut(s) 643, 1059
FauNDI CATATG 1 cut(s) 826
FokI GGATG 3 cut(s) 176, 281, 422
FriOI GRGCYC 1 cut(s) 1308
FspBI CTAG 2 cut(s) 363, 1233
GlaI GCGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 67
HapII CCGG 3 cut(s) 246, 396, 891
HgaI GACGC 2 cut(s) 176, 1218
HhaI GCGC 1 cut(s) 937
Hin1I GRCGYC 1 cut(s) 1229
Hin1II CATG 1 cut(s) 460
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HinfI GANTC 2 cut(s) 212, 1118
HpaII CCGG 3 cut(s) 246, 396, 891
HphI GGTGA 6 cut(s) 67, 235, 353, 964, 1039, 1216
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 7 cut(s) 211, 310, 709, 777, 1047, 1123, 1310
Hpy188III TCNNGA 2 cut(s) 122, 1172
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 697
HpyCH4III ACNGT 2 cut(s) 70, 1225
HpyCH4V TGCA 6 cut(s) 8, 413, 584, 656, 722, 788
HpyF3I CTNAG 5 cut(s) 297, 627, 660, 792, 846
Hsp92I GRCGYC 1 cut(s) 1229
Hsp92II CATG 1 cut(s) 460
HspAI GCGC 1 cut(s) 935
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
KspI CCGCGG 2 cut(s) 79, 1291
LmnI GCTCC 2 cut(s) 86, 1303
LweI GCATC 4 cut(s) 48, 301, 400, 457
MaeI CTAG 2 cut(s) 363, 1233
MaeIII GTNAC 2 cut(s) 893, 1295
MboII GAAGA 4 cut(s) 847, 873, 967, 1276
MhlI GDGCHC 1 cut(s) 1308
MluCI AATT 1 cut(s) 277
MlyI GAGTC 2 cut(s) 221, 1127
MmeI TCCRAC 2 cut(s) 189, 1101
MroNI GCCGGC 1 cut(s) 395
MseI TTAA 4 cut(s) 141, 372, 507, 1269
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 4 cut(s) 78, 791, 845, 1290
MspI CCGG 3 cut(s) 246, 396, 891
Mva1269I GAATGC 2 cut(s) 790, 1096
MvnI CGCG 3 cut(s) 78, 170, 1290
NaeI GCCGGC 1 cut(s) 397
NdeI CATATG 1 cut(s) 826
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 2 cut(s) 412, 1078
NmuCI GTSAC 1 cut(s) 1295
PaqCI CACCTGC 1 cut(s) 707
PceI AGGCCT 2 cut(s) 437, 494
PcsI WCGNNNNNNNCGW 3 cut(s) 104, 167, 1145
PctI GAATGC 2 cut(s) 790, 1096
PdiI GCCGGC 1 cut(s) 397
PinAI ACCGGT 1 cut(s) 890
PleI GAGTC 2 cut(s) 220, 1126
PpsI GAGTC 2 cut(s) 220, 1126
PshBI ATTAAT 1 cut(s) 507
Psp124BI GAGCTC 1 cut(s) 1308
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 145, 856
PstI CTGCAG 1 cut(s) 586
PvuII CAGCTG 2 cut(s) 791, 845
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 1308
SacII CCGCGG 2 cut(s) 79, 1291
SaqAI TTAA 4 cut(s) 141, 372, 507, 1269
Sau96I GGNCC 2 cut(s) 145, 856
SchI GAGTC 2 cut(s) 221, 1127
SduI GDGCHC 1 cut(s) 1308
SetI ASST 8 cut(s) 429, 661, 721, 793, 847, 954, 1029, 1308
SfaNI GCATC 4 cut(s) 48, 301, 400, 457
SfcI CTRYAG 1 cut(s) 582
SfiI GGCCNNNNNGGCC 1 cut(s) 500
Sfr303I CCGCGG 2 cut(s) 79, 1291
SgrBI CCGCGG 2 cut(s) 79, 1291
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 1172
SmoI CTYRAG 1 cut(s) 1172
Sse9I AATT 1 cut(s) 277
SseBI AGGCCT 2 cut(s) 437, 494
SspMI CTAG 2 cut(s) 363, 1233
SstI GAGCTC 1 cut(s) 1308
StuI AGGCCT 2 cut(s) 437, 494
StyI CCWWGG 2 cut(s) 1161, 1215
TaaI ACNGT 2 cut(s) 70, 1225
TasI AATT 1 cut(s) 277
Tru1I TTAA 4 cut(s) 141, 372, 507, 1269
Tru9I TTAA 4 cut(s) 141, 372, 507, 1269
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 1295
Tsp45I GTSAC 1 cut(s) 1295
TspGWI ACGGA 4 cut(s) 176, 236, 710, 1142
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 507
XapI RAATTY 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 1222
XspI CTAG 2 cut(s) 363, 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.