Rh4BG281200

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016825
Physical Location & Seq
Reverse (-)
45512780 .. 45513934
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG281200.1

Sequence Viewer

Length: 864 bp
ATGGCTTCAAACAGATCTTATTACATAGTGCTCTTAGTTATAGCGGTTGCTATTATGCTGGCCAACCTCTGCAGCGGTTCTGGGGTTGGCCACATGCCGTCGAAGGAGGAGGAAGGCCGAGACTTTGAGGAGTTTAATGACCAGACAGGGAAGGCGAAGGTGGTGGAGGTGGAGGAGAAAGGTGGTAAAGAAGGTTCAGAGTCATGGACTGAATGGGCCAAGGAGAAAATTGGGTTGAAGCACGATGAGCATGACGGGGATAGTACCATTAAGAAAGCTTCTGATGCTGCCAAGAATACCAAGGACACCTCATCTGGAACTGGTCAATACGCAACGGAAAAGGCCAGAGAGGCGGCAGGGAAGGCGAACGAGATGAAAGATACGGCTGCAGAGAAAGCTGGTAAGACAGTTGGTGCAGTGAAGGAGAAGGCAGGTGAGACGATTGATATCACAAATCCAGCGAAAGAGAAAACCTATGAAACTGCGAATGCAGCAGAGGAGATGGCCAGTGAGGTAAAGGGAAAGGCTTATGAGACCACAAACACAGAGAAAGACAAGACGTACGACACCACAAAATCTGCTAAAGAAACGGCCTCAAAGACTACAGAGAAAGCTAGTGAGGCTAAGGAAAGAGCAAAGCAGAAGGCAGAGGAGGCCAAAGAGACAGCAAAGCAGAAGCAAGAAGAGGCAGAGGAGCAATCAAGTTGGGCTGCAGAGAAAGCAAAGGAAGGTCTTGAAGCCGCGAAGAAGAAAGCCGAGGAGACTGTGAAGTCTGCTAAGGACACCCTTTCTGAAGCTACCAAGCAGCAGTCAGAGAAGATCAAAAAGACAATGTCTGGTCGAGGACGTGATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

287

Amino Acids

31.14

Weight (kDa)

5.45

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
AasI GACNNNNNNGTC 1 cut(s) 769
Acc36I ACCTGC 1 cut(s) 422
AccII CGCG 1 cut(s) 743
AciI CCGC 4 cut(s) 44, 75, 353, 741
AcoI YGGCCR 3 cut(s) 60, 88, 504
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 2 cut(s) 265, 563
AgsI TTSAA 3 cut(s) 9, 238, 737
AjiI CACGTC 1 cut(s) 848
AluBI AGCT 5 cut(s) 278, 398, 614, 797, 859
AluI AGCT 5 cut(s) 278, 398, 614, 797, 859
Alw21I GWGCWC 2 cut(s) 33, 861
Alw26I GTCTC 5 cut(s) 114, 431, 527, 656, 755
AoxI GGCC 8 cut(s) 60, 88, 115, 216, 342, 504, 591, 654
ApeKI GCWGC 6 cut(s) 72, 287, 386, 491, 710, 805
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 446
BalI TGGCCA 3 cut(s) 62, 90, 506
BanII GRGCYC 1 cut(s) 861
Bbv12I GWGCWC 2 cut(s) 33, 861
BbvI GCAGC 6 cut(s) 84, 274, 373, 503, 697, 817
BccI CCATC 1 cut(s) 496
BceAI ACGGC 3 cut(s) 82, 399, 606
BcoDI GTCTC 5 cut(s) 114, 431, 527, 656, 755
BfaI CTAG 1 cut(s) 615
BfmI CTRYAG 4 cut(s) 70, 387, 603, 711
BfuAI ACCTGC 1 cut(s) 422
BglI GCCNNNNNGGC 1 cut(s) 350
BglII AGATCT 1 cut(s) 14
BisI GCNGC 8 cut(s) 73, 288, 354, 387, 492, 711, 741, 806
BlsI GCNGC 8 cut(s) 74, 289, 355, 388, 493, 712, 742, 807
BmgBI CACGTC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 274
Bpu10I CCTNAGC 2 cut(s) 624, 777
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 527
BsaJI CCNNGG 3 cut(s) 219, 300, 756
Bse1I ACTGG 2 cut(s) 325, 507
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 219, 300, 756
BseJI GATNNNNATC 1 cut(s) 446
BseNI ACTGG 2 cut(s) 325, 507
BseRI GAGGAG 7 cut(s) 122, 143, 188, 512, 665, 707, 773
BseXI GCAGC 6 cut(s) 84, 274, 373, 503, 697, 817
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 743
BshFI GGCC 8 cut(s) 62, 90, 117, 218, 344, 506, 593, 656
BsiHKAI GWGCWC 2 cut(s) 33, 861
BsiWI CGTACG 1 cut(s) 561
BsmAI GTCTC 5 cut(s) 114, 431, 527, 656, 755
BsmBI CGTCTC 1 cut(s) 431
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 8 cut(s) 62, 90, 117, 218, 344, 506, 593, 656
Bso31I GGTCTC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 33, 861
Bsp143I GATC 2 cut(s) 14, 819
BspACI CCGC 4 cut(s) 44, 75, 353, 741
BspANI GGCC 8 cut(s) 62, 90, 117, 218, 344, 506, 593, 656
BspFNI CGCG 1 cut(s) 743
BspMAI CTGCAG 3 cut(s) 74, 391, 715
BspMI ACCTGC 1 cut(s) 422
BspQI GCTCTTC 1 cut(s) 849
BspTNI GGTCTC 1 cut(s) 527
BsrI ACTGG 2 cut(s) 325, 507
BssECI CCNNGG 3 cut(s) 219, 300, 756
BssMI GATC 2 cut(s) 14, 819
BssT1I CCWWGG 2 cut(s) 219, 300
Bst4CI ACNGT 2 cut(s) 409, 766
Bst6I CTCTTC 2 cut(s) 678, 849
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 34, 624, 777
BstFNI CGCG 1 cut(s) 743
BstKTI GATC 2 cut(s) 17, 822
BstMAI GTCTC 5 cut(s) 114, 431, 527, 656, 755
BstMBI GATC 2 cut(s) 14, 819
BstMWI GCNNNNNNNGC 9 cut(s) 247, 284, 350, 362, 395, 491, 620, 653, 719
BstNSI RCATGY 1 cut(s) 97
BstSFI CTRYAG 4 cut(s) 70, 387, 603, 711
BstUI CGCG 1 cut(s) 743
BstV1I GCAGC 6 cut(s) 84, 274, 373, 503, 697, 817
BstX2I RGATCY 1 cut(s) 14
BstYI RGATCY 1 cut(s) 14
BsuRI GGCC 8 cut(s) 62, 90, 117, 218, 344, 506, 593, 656
BtrI CACGTC 1 cut(s) 848
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 2 cut(s) 423, 514
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 2 cut(s) 264, 562
CviAII CATG 3 cut(s) 94, 204, 251
CviQI GTAC 2 cut(s) 264, 562
DdeI CTNAG 3 cut(s) 34, 624, 777
DpnI GATC 2 cut(s) 16, 821
DpnII GATC 2 cut(s) 14, 819
DrdI GACNNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 1 cut(s) 769
EaeI YGGCCR 3 cut(s) 60, 88, 504
Eam1104I CTCTTC 2 cut(s) 678, 849
EarI CTCTTC 2 cut(s) 678, 849
Ecl136II GAGCTC 1 cut(s) 859
Eco130I CCWWGG 2 cut(s) 219, 300
Eco24I GRGCYC 1 cut(s) 861
Eco31I GGTCTC 1 cut(s) 527
Eco32I GATATC 1 cut(s) 448
Eco53kI GAGCTC 1 cut(s) 859
Eco57I CTGAAG 1 cut(s) 813
EcoICRI GAGCTC 1 cut(s) 859
EcoRV GATATC 1 cut(s) 448
EcoT14I CCWWGG 2 cut(s) 219, 300
EcoT38I GRGCYC 1 cut(s) 861
ErhI CCWWGG 2 cut(s) 219, 300
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 3 cut(s) 97, 207, 254
FaiI YATR 8 cut(s) 26, 41, 56, 95, 205, 252, 477, 531
FatI CATG 3 cut(s) 93, 203, 250
Fnu4HI GCNGC 8 cut(s) 73, 288, 354, 387, 492, 711, 741, 806
FriOI GRGCYC 1 cut(s) 861
Fsp4HI GCNGC 8 cut(s) 73, 288, 354, 387, 492, 711, 741, 806
FspBI CTAG 1 cut(s) 615
GluI GCNGC 8 cut(s) 73, 288, 354, 387, 492, 711, 741, 806
HaeIII GGCC 8 cut(s) 62, 90, 117, 218, 344, 506, 593, 656
Hin1II CATG 3 cut(s) 97, 207, 254
HindIII AAGCTT 1 cut(s) 276
HinfI GANTC 1 cut(s) 200
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 5 cut(s) 199, 283, 793, 814, 863
Hpy188III TCNNGA 2 cut(s) 315, 734
Hpy99I CGWCG 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 409, 766
HpyCH4IV ACGT 2 cut(s) 560, 847
HpyCH4V TGCA 5 cut(s) 72, 389, 416, 491, 713
HpyF10VI GCNNNNNNNGC 9 cut(s) 247, 284, 350, 362, 395, 491, 620, 653, 719
HpyF3I CTNAG 3 cut(s) 34, 624, 777
HpySE526I ACGT 2 cut(s) 560, 847
Hsp92II CATG 3 cut(s) 97, 207, 254
Kzo9I GATC 2 cut(s) 14, 819
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 1 cut(s) 694
Lsp1109I GCAGC 6 cut(s) 84, 274, 373, 503, 697, 817
LweI GCATC 1 cut(s) 274
MaeI CTAG 1 cut(s) 615
MaeII ACGT 2 cut(s) 560, 847
MalI GATC 2 cut(s) 16, 821
MboI GATC 2 cut(s) 14, 819
MboII GAAGA 4 cut(s) 695, 757, 760, 829
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 33, 861
MlsI TGGCCA 3 cut(s) 62, 90, 506
MluCI AATT 1 cut(s) 228
MluNI TGGCCA 3 cut(s) 62, 90, 506
MlyI GAGTC 1 cut(s) 209
Mox20I TGGCCA 3 cut(s) 62, 90, 506
MscI TGGCCA 3 cut(s) 62, 90, 506
MseI TTAA 2 cut(s) 135, 270
Msp20I TGGCCA 3 cut(s) 62, 90, 506
MspA1I CMGCKG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 493
MvnI CGCG 1 cut(s) 743
MwoI GCNNNNNNNGC 9 cut(s) 247, 284, 350, 362, 395, 491, 620, 653, 719
NdeII GATC 2 cut(s) 14, 819
NlaIII CATG 3 cut(s) 97, 207, 254
NmeAIII GCCGAG 2 cut(s) 143, 781
NspI RCATGY 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 849
PctI GAATGC 1 cut(s) 493
Pfl23II CGTACG 1 cut(s) 561
PflFI GACNNNGTC 1 cut(s) 832
PkrI GCNGC 8 cut(s) 74, 289, 355, 388, 493, 712, 742, 807
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 861
PspLI CGTACG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 216
PsrI GAACNNNNNNTAC 2 cut(s) 178, 210
PstI CTGCAG 3 cut(s) 74, 391, 715
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 832
RsaI GTAC 2 cut(s) 265, 563
RsaNI GTAC 2 cut(s) 264, 562
SacI GAGCTC 1 cut(s) 861
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 2 cut(s) 135, 270
SatI GCNGC 8 cut(s) 73, 288, 354, 387, 492, 711, 741, 806
Sau3AI GATC 2 cut(s) 14, 819
Sau96I GGNCC 1 cut(s) 216
SchI GAGTC 1 cut(s) 209
SduI GDGCHC 2 cut(s) 33, 861
SfaNI GCATC 1 cut(s) 274
SfcI CTRYAG 4 cut(s) 70, 387, 603, 711
Sse9I AATT 1 cut(s) 228
SsiI CCGC 4 cut(s) 44, 75, 353, 741
SspMI CTAG 1 cut(s) 615
SstI GAGCTC 1 cut(s) 861
StyI CCWWGG 2 cut(s) 219, 300
TaaI ACNGT 2 cut(s) 409, 766
TaiI ACGT 2 cut(s) 563, 850
TaqI TCGA 2 cut(s) 101, 841
TasI AATT 1 cut(s) 228
TauI GCSGC 2 cut(s) 356, 743
Tru1I TTAA 2 cut(s) 135, 270
Tru9I TTAA 2 cut(s) 135, 270
TscAI CASTG 2 cut(s) 423, 514
TseI GCWGC 6 cut(s) 72, 287, 386, 491, 710, 805
TspDTI ATGAA 2 cut(s) 389, 492
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 2 cut(s) 423, 514
Tth111I GACNNNGTC 1 cut(s) 832
XceI RCATGY 1 cut(s) 97
XspI CTAG 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.