Rorug04G0218900

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0016825
Physical Location & Seq
Forward (+)
37806803 .. 37812114
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0218900.1

Sequence Viewer

Length: 1104 bp
ATGTGGCTGTCTGAAACATTCAGTGCTGCAGGATGGCTCACCATAGCATTTGCACAGAATGCTTGGTGGCTTGATTTAGGACGGTTGTCAGTGGGATTCGGTGTTGGTCTAATTTGCTACGTGGTACCTGTATACATAGCAGAAATAACACCTAAGGATCTTAGAGGAAGATTTACTTCAGCTACTCAGTTGATGATTTGTTGCGGCGTAGCATTTGTGTTTTTCCTTGGAAATGTCATAACCTGGCGGACCTTGGCGGTTATCGGTGCTATTCCATCTCTTGTACACATTATAGGCCTATTTTTTATTCCAGAGTCTCCAAGGTGGCTGGCCAAAATTGGTAGGCACAAGGACTTTGAAGCAGCTCTTCAGCGTCTGAGAGGAAAGCATGCCGACATATCTCAAGAAGCAGCTGAAATCATGAATTATACAGAAATGTTTCAGCACCACTCGGAAAAAGTCCTAGACTTGTTCCAAAAGAGATATGCTTACTCACTCATAGTTGGAGTTGGGCTCATGTCACTGCAACAACTTGGGGGTTCCTATGCAATAACATTTTACGCAAGTTCTATATTTGTAGATGCAGGTTTTCCAAGTGACATTGGAACTATATCATCGTCTCTCATTGCGATACCTGGTGTTGCACTGAGTGTGCTCTTAACAGACAAAGCTGGAAGAAGACCACTTCTAATGGTTTCTGCAGGAGGATTGTGCTTGTGTAACTTCCTTGTGGGCTTGGCATTCTGCTTTCAGGACCTCAACTTGTGGAAGGAGGTCACTCCCATTTTGGTGTACATTAGCTTATTGGGTCAATGTGTATCAAACACAATAGGGATGTCAGAATTACCCTGGGTTATTATATCAGAGATATACCCCATAAACGTTAAAGGTTCAGCTGGAAGCCTCTCGAGTTTGGTAAAATGGTCTTGTGCTTGGATAGTAACATACACTTTCAATTTCATGATGGACTGGAGCTCGGCAGGAACATTCTTCATCTTCTCAGCCATTTGTGGCATAACACTTCTGTTTGTAGCAAAGCTGGTGCCGGAGACTAAGGGGCGAACCCTAGAGGAAATACAAGCATCAATTGCCCATTTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

367

Amino Acids

40.39

Weight (kDa)

7.02

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 5 - 304 1.9e-16 Major Facilitator Superfamily
Sugar_tr PF00083 7 - 361 3.4e-72 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 575
Acc65I GGTACC 1 cut(s) 124
AccB1I GGYRCC 2 cut(s) 124, 1042
AccI GTMKAC 1 cut(s) 132
AciI CCGC 3 cut(s) 204, 247, 257
AclI AACGTT 1 cut(s) 882
AclWI GGATC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 2 cut(s) 162, 353
AdeI CACNNNGTG 1 cut(s) 650
AfaI GTAC 3 cut(s) 126, 285, 794
AgsI TTSAA 2 cut(s) 359, 955
AjnI CCWGG 3 cut(s) 242, 634, 848
AluBI AGCT 8 cut(s) 182, 365, 413, 671, 801, 896, 975, 1039
AluI AGCT 8 cut(s) 182, 365, 413, 671, 801, 896, 975, 1039
Alw21I GWGCWC 2 cut(s) 657, 977
Alw26I GTCTC 3 cut(s) 321, 624, 1043
AlwI GGATC 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 907
AoxI GGCC 2 cut(s) 295, 330
ApeKI GCWGC 3 cut(s) 26, 362, 410
Asp700I GAANNNNTTC 1 cut(s) 438
Asp718I GGTACC 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 249, 754
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 907
AvaII GGWCC 2 cut(s) 249, 754
AxyI CCTNAGG 1 cut(s) 153
BalI TGGCCA 1 cut(s) 332
BanI GGYRCC 2 cut(s) 124, 1042
BanII GRGCYC 2 cut(s) 516, 977
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 2 cut(s) 657, 977
BbvI GCAGC 3 cut(s) 13, 374, 422
BccI CCATC 3 cut(s) 27, 283, 958
BciT130I CCWGG 3 cut(s) 244, 636, 850
BcoDI GTCTC 3 cut(s) 321, 624, 1043
BfaI CTAG 2 cut(s) 464, 1067
BfmI CTRYAG 2 cut(s) 27, 699
BfuAI ACCTGC 1 cut(s) 575
BisI GCNGC 4 cut(s) 27, 205, 363, 411
BlsI GCNGC 4 cut(s) 28, 206, 364, 412
Bme1390I CCNGG 3 cut(s) 244, 636, 850
Bme18I GGWCC 2 cut(s) 249, 754
BmeT110I CYCGRG 1 cut(s) 907
BmgT120I GGNCC 2 cut(s) 249, 754
BmiI GGNNCC 3 cut(s) 126, 541, 1044
BmrFI CCNGG 3 cut(s) 244, 636, 850
BmsI GCATC 2 cut(s) 571, 1091
BoxI GACNNNNGTC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 685
BplI GAGNNNNNCTC 2 cut(s) 498, 530
BpmI CTGGAG 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 387
BsaAI YACGTR 1 cut(s) 121
BsaJI CCNNGG 5 cut(s) 226, 252, 320, 848, 849
Bse1I ACTGG 1 cut(s) 974
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 624
BseBI CCWGG 3 cut(s) 244, 636, 850
BseDI CCNNGG 5 cut(s) 226, 252, 320, 848, 849
BseGI GGATG 2 cut(s) 38, 840
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 4 cut(s) 200, 368, 638, 1014
BseNI ACTGG 1 cut(s) 974
BseXI GCAGC 3 cut(s) 13, 374, 422
BshFI GGCC 2 cut(s) 297, 332
BshNI GGYRCC 2 cut(s) 124, 1042
BsiHKAI GWGCWC 2 cut(s) 657, 977
BsiHKCI CYCGRG 1 cut(s) 907
BsiSI CCGG 1 cut(s) 1046
BsmAI GTCTC 3 cut(s) 321, 624, 1043
BsmBI CGTCTC 1 cut(s) 624
BsmI GAATGC 2 cut(s) 64, 740
BsnI GGCC 2 cut(s) 297, 332
BsoBI CYCGRG 1 cut(s) 907
Bsp1286I GDGCHC 3 cut(s) 516, 657, 977
Bsp1407I TGTACA 2 cut(s) 283, 792
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 3 cut(s) 204, 247, 257
BspANI GGCC 2 cut(s) 297, 332
BspCNI CTCAG 4 cut(s) 199, 369, 639, 1013
BspHI TCATGA 2 cut(s) 420, 960
BspLI GGNNCC 3 cut(s) 126, 541, 1044
BspMAI CTGCAG 2 cut(s) 31, 703
BspMI ACCTGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 372
BspT107I GGYRCC 2 cut(s) 124, 1042
BsrDI GCAATG 1 cut(s) 624
BsrGI TGTACA 2 cut(s) 283, 792
BsrI ACTGG 1 cut(s) 974
BssECI CCNNGG 5 cut(s) 226, 252, 320, 848, 849
BssMI GATC 1 cut(s) 157
BssNAI GTATAC 1 cut(s) 133
BssT1I CCWWGG 3 cut(s) 226, 252, 320
Bst1107I GTATAC 1 cut(s) 133
Bst2UI CCWGG 3 cut(s) 244, 636, 850
Bst4CI ACNGT 1 cut(s) 84
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 59, 1088
BstAUI TGTACA 2 cut(s) 283, 792
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 2 cut(s) 330, 390
BstDEI CTNAG 7 cut(s) 153, 161, 186, 377, 647, 1000, 1053
BstF5I GGATG 2 cut(s) 38, 840
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 3 cut(s) 321, 624, 1043
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 59, 1088
BstNI CCWGG 3 cut(s) 244, 636, 850
BstNSI RCATGY 1 cut(s) 392
BstPAI GACNNNNGTC 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 242, 634, 848
BstSFI CTRYAG 2 cut(s) 27, 699
BstV1I GCAGC 3 cut(s) 13, 374, 422
BstV2I GAAGAC 1 cut(s) 685
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BstZ17I GTATAC 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 153
BsuRI GGCC 2 cut(s) 297, 332
BtsCI GGATG 2 cut(s) 38, 840
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 5 cut(s) 28, 96, 521, 644, 1099
BveI ACCTGC 1 cut(s) 575
Cac8I GCNNGC 2 cut(s) 330, 390
CaiI CAGNNNCTG 1 cut(s) 376
CciI TCATGA 2 cut(s) 420, 960
Cfr13I GGNCC 2 cut(s) 249, 754
CseI GACGC 1 cut(s) 362
CsiI ACCWGGT 1 cut(s) 634
Csp6I GTAC 3 cut(s) 125, 284, 793
CviAII CATG 4 cut(s) 389, 421, 517, 961
CviQI GTAC 3 cut(s) 125, 284, 793
DdeI CTNAG 7 cut(s) 153, 161, 186, 377, 647, 1000, 1053
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 650
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 975
Eco130I CCWWGG 3 cut(s) 226, 252, 320
Eco147I AGGCCT 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 516, 977
Eco47I GGWCC 2 cut(s) 249, 754
Eco53kI GAGCTC 1 cut(s) 975
Eco57I CTGAAG 2 cut(s) 162, 353
Eco81I CCTNAGG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 907
EcoICRI GAGCTC 1 cut(s) 975
EcoO109I RGGNCCY 1 cut(s) 754
EcoRII CCWGG 3 cut(s) 242, 634, 848
EcoT14I CCWWGG 3 cut(s) 226, 252, 320
EcoT38I GRGCYC 2 cut(s) 516, 977
ErhI CCWWGG 3 cut(s) 226, 252, 320
Esp3I CGTCTC 1 cut(s) 624
FaeI CATG 4 cut(s) 392, 424, 520, 964
FalI AAGNNNNNCTT 4 cut(s) 160, 192, 351, 383
FatI CATG 4 cut(s) 388, 420, 516, 960
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 4 cut(s) 27, 205, 363, 411
FokI GGATG 2 cut(s) 45, 847
FriOI GRGCYC 2 cut(s) 516, 977
Fsp4HI GCNGC 4 cut(s) 27, 205, 363, 411
FspBI CTAG 2 cut(s) 464, 1067
GluI GCNGC 4 cut(s) 27, 205, 363, 411
GsuI CTGGAG 1 cut(s) 991
HaeIII GGCC 2 cut(s) 297, 332
HapII CCGG 1 cut(s) 1046
HgaI GACGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 392, 424, 520, 964
HinfI GANTC 2 cut(s) 96, 314
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 133, 286, 793
Hpy188I TCNGA 5 cut(s) 13, 378, 454, 841, 865
Hpy188III TCNNGA 6 cut(s) 311, 404, 421, 752, 907, 961
Hpy8I GTNNAC 3 cut(s) 133, 286, 793
HpyAV CCTTC 1 cut(s) 763
HpyCH4III ACNGT 1 cut(s) 84
HpyCH4IV ACGT 2 cut(s) 120, 882
HpyCH4V TGCA 7 cut(s) 29, 53, 526, 548, 584, 644, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 1088
HpyF3I CTNAG 7 cut(s) 153, 161, 186, 377, 647, 1000, 1053
HpySE526I ACGT 2 cut(s) 120, 882
Hsp92II CATG 4 cut(s) 392, 424, 520, 964
KpnI GGTACC 1 cut(s) 128
Kzo9I GATC 1 cut(s) 157
LguI GCTCTTC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 972
Lsp1109I GCAGC 3 cut(s) 13, 374, 422
LweI GCATC 2 cut(s) 571, 1091
MabI ACCWGGT 1 cut(s) 634
MaeI CTAG 2 cut(s) 464, 1067
MaeII ACGT 2 cut(s) 120, 882
MaeIII GTNAC 5 cut(s) 519, 596, 719, 775, 940
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 6 cut(s) 180, 359, 687, 690, 982, 988
MfeI CAATTG 1 cut(s) 1086
MflI RGATCY 1 cut(s) 157
MhlI GDGCHC 3 cut(s) 516, 657, 977
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 6 cut(s) 111, 336, 424, 842, 955, 1086
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 1 cut(s) 484
MnlI CCTC 7 cut(s) 158, 374, 698, 766, 767, 914, 1063
Mox20I TGGCCA 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 438
MscI TGGCCA 1 cut(s) 332
MseI TTAA 2 cut(s) 659, 885
MslI CAYNNNNRTG 1 cut(s) 788
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 2 cut(s) 413, 896
MspI CCGG 1 cut(s) 1046
MspR9I CCNGG 3 cut(s) 244, 636, 850
MunI CAATTG 1 cut(s) 1086
Mva1269I GAATGC 2 cut(s) 64, 740
MvaI CCWGG 3 cut(s) 244, 636, 850
MwoI GCNNNNNNNGC 2 cut(s) 59, 1088
NdeII GATC 1 cut(s) 157
NlaIII CATG 4 cut(s) 392, 424, 520, 964
NlaIV GGNNCC 3 cut(s) 126, 541, 1044
NmeAIII GCCGAG 1 cut(s) 956
NmuCI GTSAC 3 cut(s) 519, 596, 775
NspI RCATGY 1 cut(s) 392
PaeI GCATGC 1 cut(s) 392
PaeR7I CTCGAG 1 cut(s) 907
PagI TCATGA 2 cut(s) 420, 960
PasI CCCWGGG 1 cut(s) 849
PceI AGGCCT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 372
PctI GAATGC 2 cut(s) 64, 740
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 96
PkrI GCNGC 4 cut(s) 28, 206, 364, 412
PleI GAGTC 1 cut(s) 322
PpsI GAGTC 1 cut(s) 322
Ppu21I YACGTR 1 cut(s) 121
PpuMI RGGWCCY 1 cut(s) 754
PshAI GACNNNNGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 977
Psp1406I AACGTT 1 cut(s) 882
Psp5II RGGWCCY 1 cut(s) 754
Psp6I CCWGG 3 cut(s) 242, 634, 848
PspGI CCWGG 3 cut(s) 242, 634, 848
PspN4I GGNNCC 3 cut(s) 126, 541, 1044
PspPI GGNCC 2 cut(s) 249, 754
PspPPI RGGWCCY 1 cut(s) 754
PstI CTGCAG 2 cut(s) 31, 703
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 157
PvuII CAGCTG 2 cut(s) 413, 896
RsaI GTAC 3 cut(s) 126, 285, 794
RsaNI GTAC 3 cut(s) 125, 284, 793
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 372
SaqAI TTAA 2 cut(s) 659, 885
SatI GCNGC 4 cut(s) 27, 205, 363, 411
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 2 cut(s) 249, 754
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 3 cut(s) 244, 636, 850
SduI GDGCHC 3 cut(s) 516, 657, 977
SexAI ACCWGGT 1 cut(s) 634
SfaNI GCATC 2 cut(s) 571, 1091
SfcI CTRYAG 2 cut(s) 27, 699
Sfr274I CTCGAG 1 cut(s) 907
SinI GGWCC 2 cut(s) 249, 754
SlaI CTCGAG 1 cut(s) 907
SmiMI CAYNNNNRTG 1 cut(s) 788
SmlI CTYRAG 2 cut(s) 402, 907
SmoI CTYRAG 2 cut(s) 402, 907
SphI GCATGC 1 cut(s) 392
Sse9I AATT 6 cut(s) 111, 336, 424, 842, 955, 1086
SseBI AGGCCT 1 cut(s) 297
SsiI CCGC 3 cut(s) 204, 247, 257
SspMI CTAG 2 cut(s) 464, 1067
SstI GAGCTC 1 cut(s) 977
StuI AGGCCT 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 242, 634, 848
StyI CCWWGG 3 cut(s) 226, 252, 320
TaaI ACNGT 1 cut(s) 84
TaiI ACGT 2 cut(s) 123, 885
TaqI TCGA 1 cut(s) 908
TasI AATT 6 cut(s) 111, 336, 424, 842, 955, 1086
TatI WGTACW 2 cut(s) 283, 792
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 2 cut(s) 659, 885
Tru9I TTAA 2 cut(s) 659, 885
TscAI CASTG 4 cut(s) 28, 96, 528, 651
TseFI GTSAC 3 cut(s) 519, 596, 775
TseI GCWGC 3 cut(s) 26, 362, 410
Tsp45I GTSAC 3 cut(s) 519, 596, 775
TspDTI ATGAA 3 cut(s) 437, 949, 982
TspRI CASTG 4 cut(s) 28, 96, 528, 651
VpaK11BI GGWCC 2 cut(s) 249, 754
XceI RCATGY 1 cut(s) 392
XhoI CTCGAG 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 464, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.