Rh4DG278500

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0016825
Physical Location & Seq
Reverse (-)
49889638 .. 49890827
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG278500.1

Sequence Viewer

Length: 897 bp
ATGGCTTCAAATAGATCTTATTACATAGTGCTCTTAGTTATAGCGGTTGCTATTATGCTGGCCAACCTCTGCAGCGGTTCTGGGGTTGGCCACATACCGTCGACGGAGGAGGAAGGCCGAGACTTTGAGGAGTTTAATGACAAGACGGGGAAGGCCAAGGTGGTGGAGGTGGAGGTGGAGGAGAAAGGTGGTAAAGAAGGTTCAGAGTCATGGACTGAATGGGCCAAGGAGAAAATTGGGTTGAAGCACGATGAGCATGACGGGGATAGTACCATTAAGAAAGCTTCTGATGCTACGTATGATGCTGCCAAGAAGACCAAGGACACCGCATCTGGAACTGGTCAATACGCAACGGAAAAGGCTAGAGAGGCGGCAGAGAATGCGAACGAGATGAAAGATACGGCTGCAGAGAAAGCTGGTAAGACAGTTGGTGCAGTGAAGGGGAAGGCAGGTGAGACGATTGGGTATGCAAAAGACAAGGCTTATGATATCACAAATGCAGGGATAGATAAAACCTATGAAACTGCGAATGCAGCAAAGGAGATGGCCTATGATGCTGCAAAGGCGGCAAAGGACAAGACTTTCCAGACTACTAGTTCAGCTAAAGAAAAGGCCGCCAAGGCTGCCGAGAAGACTAATGAGGCAGAGGAAAAAGGGAAGAAAGAGGCAGAGGAGTTGAAGGAGAAGGCCTATGAAACCACTTCTCAAACCAAAAATGCAGCAAAAGATAAGGCCTCAAAGGCTGCAGAGAAGGCCAGTGAGGCAACGGAAGAGGTAAAGGGAAAGGCTTATGAGACCGCAAATACAGCTAAAGACACCATTTCTGAAGCTACCGGGCAGCAGTCGGAGAAGATCAAAAAGACAGTGTCTGGTCGAGGACGCGATGAAGAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_4

Protein Analysis

298

Amino Acids

31.87

Weight (kDa)

5.42

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016825)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21560
malus_domestica MD13G1140000.v1.1
prunus_persica Prupe.1G104900_v2.0.a1
pyrus_communis pycom13g12170
rosa_chinensis RchiOBHm_Chr4g0427611
rosa_laevigata RLG00000007222
rosa_multiflora Rmu_sc0009627.1_g000009
rosa_roxburghii Rroxscaffold_5G00369240
rosa_rugosa Rorug04G0218900
rosa_samantha Rh4AG275300 Rh4BG281200 Rh4CG296500 Rh4DG278500
rosa_wichuraiana Rw4G023870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 440
AccI GTMKAC 1 cut(s) 101
AccII CGCG 1 cut(s) 882
AciI CCGC 7 cut(s) 44, 75, 327, 371, 566, 615, 798
AcoI YGGCCR 2 cut(s) 60, 88
AcuI CTGAAG 1 cut(s) 846
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 9, 244, 679
AhlI ACTAGT 1 cut(s) 593
AluBI AGCT 6 cut(s) 284, 416, 602, 809, 830, 892
AluI AGCT 6 cut(s) 284, 416, 602, 809, 830, 892
Alw21I GWGCWC 2 cut(s) 33, 894
Alw26I GTCTC 3 cut(s) 114, 449, 788
AlwNI CAGNNNCTG 1 cut(s) 869
ApeKI GCWGC 9 cut(s) 72, 305, 404, 533, 557, 623, 719, 743, 838
AspS9I GGNCC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 835
AsuHPI GGTGA 1 cut(s) 464
BalI TGGCCA 2 cut(s) 62, 90
BanII GRGCYC 1 cut(s) 894
BbsI GAAGAC 2 cut(s) 320, 638
Bbv12I GWGCWC 2 cut(s) 33, 894
BbvI GCAGC 9 cut(s) 84, 292, 391, 544, 545, 610, 730, 731, 850
BccI CCATC 1 cut(s) 538
BceAI ACGGC 1 cut(s) 417
BcnI CCSGG 1 cut(s) 835
BcoDI GTCTC 3 cut(s) 114, 449, 788
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 2 cut(s) 363, 594
BfmI CTRYAG 3 cut(s) 70, 405, 744
BfuAI ACCTGC 1 cut(s) 440
BglI GCCNNNNNGGC 3 cut(s) 620, 740, 761
BglII AGATCT 1 cut(s) 14
Bme1390I CCNGG 1 cut(s) 835
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 835
BmsI GCATC 4 cut(s) 280, 292, 338, 544
BpiI GAAGAC 2 cut(s) 320, 638
BpuMI CCSGG 1 cut(s) 835
BsaAI YACGTR 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 4 cut(s) 156, 225, 318, 618
Bse1I ACTGG 2 cut(s) 343, 756
BseDI CCNNGG 4 cut(s) 156, 225, 318, 618
BseNI ACTGG 2 cut(s) 343, 756
BseRI GAGGAG 4 cut(s) 122, 143, 194, 686
BseXI GCAGC 9 cut(s) 84, 292, 391, 544, 545, 610, 730, 731, 850
BsgI GTGCAG 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 882
BsiHKAI GWGCWC 2 cut(s) 33, 894
BsiSI CCGG 1 cut(s) 834
BsmAI GTCTC 3 cut(s) 114, 449, 788
BsmBI CGTCTC 1 cut(s) 449
BsmI GAATGC 2 cut(s) 385, 535
Bso31I GGTCTC 1 cut(s) 788
Bsp1286I GDGCHC 2 cut(s) 33, 894
Bsp143I GATC 2 cut(s) 14, 852
BspACI CCGC 7 cut(s) 44, 75, 327, 371, 566, 615, 798
BspFNI CGCG 1 cut(s) 882
BspMAI CTGCAG 3 cut(s) 74, 409, 748
BspMI ACCTGC 1 cut(s) 440
BspQI GCTCTTC 1 cut(s) 882
BspTNI GGTCTC 1 cut(s) 788
BsrI ACTGG 2 cut(s) 343, 756
BssECI CCNNGG 4 cut(s) 156, 225, 318, 618
BssMI GATC 2 cut(s) 14, 852
BssT1I CCWWGG 4 cut(s) 156, 225, 318, 618
Bst4CI ACNGT 3 cut(s) 99, 427, 865
Bst6I CTCTTC 2 cut(s) 765, 882
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 882
BstKTI GATC 2 cut(s) 17, 855
BstMAI GTCTC 3 cut(s) 114, 449, 788
BstMBI GATC 2 cut(s) 14, 852
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 3 cut(s) 70, 405, 744
BstSNI TACGTA 1 cut(s) 297
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 9 cut(s) 84, 292, 391, 544, 545, 610, 730, 731, 850
BstV2I GAAGAC 2 cut(s) 320, 638
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 163
BstYI RGATCY 1 cut(s) 14
BtsI GCAGTG 1 cut(s) 441
BtsIMutI CAGTG 3 cut(s) 441, 763, 870
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 869
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 888
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 210, 257
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 1 cut(s) 34
DpnI GATC 2 cut(s) 16, 854
DpnII GATC 2 cut(s) 14, 852
EaeI YGGCCR 2 cut(s) 60, 88
Eam1104I CTCTTC 2 cut(s) 765, 882
EarI CTCTTC 2 cut(s) 765, 882
Ecl136II GAGCTC 1 cut(s) 892
Eco105I TACGTA 1 cut(s) 297
Eco130I CCWWGG 4 cut(s) 156, 225, 318, 618
Eco147I AGGCCT 2 cut(s) 689, 734
Eco24I GRGCYC 1 cut(s) 894
Eco31I GGTCTC 1 cut(s) 788
Eco32I GATATC 1 cut(s) 490
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 1 cut(s) 846
EcoICRI GAGCTC 1 cut(s) 892
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 4 cut(s) 156, 225, 318, 618
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 4 cut(s) 156, 225, 318, 618
Esp3I CGTCTC 1 cut(s) 449
FaeI CATG 2 cut(s) 213, 260
FatI CATG 2 cut(s) 209, 256
FblI GTMKAC 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 894
FspBI CTAG 2 cut(s) 363, 594
HapII CCGG 1 cut(s) 834
HgaI GACGC 1 cut(s) 888
Hin1II CATG 2 cut(s) 213, 260
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HindIII AAGCTT 1 cut(s) 282
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 834
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 102
Hpy188I TCNGA 5 cut(s) 205, 289, 826, 847, 896
Hpy188III TCNNGA 2 cut(s) 333, 586
Hpy8I GTNNAC 1 cut(s) 102
Hpy99I CGWCG 2 cut(s) 103, 106
HpyAV CCTTC 8 cut(s) 107, 145, 191, 433, 439, 673, 679, 745
HpyCH4III ACNGT 3 cut(s) 99, 427, 865
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 9 cut(s) 72, 407, 434, 470, 500, 533, 560, 719, 746
HpyF3I CTNAG 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 2 cut(s) 213, 260
Kzo9I GATC 2 cut(s) 14, 852
LguI GCTCTTC 1 cut(s) 882
Lsp1109I GCAGC 9 cut(s) 84, 292, 391, 544, 545, 610, 730, 731, 850
LweI GCATC 4 cut(s) 280, 292, 338, 544
MaeI CTAG 2 cut(s) 363, 594
MaeII ACGT 1 cut(s) 296
MalI GATC 2 cut(s) 16, 854
MboI GATC 2 cut(s) 14, 852
MboII GAAGA 5 cut(s) 325, 643, 670, 782, 862
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 33, 894
MlsI TGGCCA 2 cut(s) 62, 90
MluCI AATT 1 cut(s) 234
MluNI TGGCCA 2 cut(s) 62, 90
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 825
Mox20I TGGCCA 2 cut(s) 62, 90
MscI TGGCCA 2 cut(s) 62, 90
MseI TTAA 2 cut(s) 135, 276
Msp20I TGGCCA 2 cut(s) 62, 90
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 1 cut(s) 834
MspR9I CCNGG 1 cut(s) 835
Mva1269I GAATGC 2 cut(s) 385, 535
MvnI CGCG 1 cut(s) 882
NciI CCSGG 1 cut(s) 835
NdeII GATC 2 cut(s) 14, 852
NlaIII CATG 2 cut(s) 213, 260
NmeAIII GCCGAG 2 cut(s) 143, 652
PaqCI CACCTGC 1 cut(s) 440
PceI AGGCCT 2 cut(s) 689, 734
PciSI GCTCTTC 1 cut(s) 882
PctI GAATGC 2 cut(s) 385, 535
PflFI GACNNNGTC 1 cut(s) 865
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 894
PspPI GGNCC 1 cut(s) 222
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstI CTGCAG 3 cut(s) 74, 409, 748
PstNI CAGNNNCTG 1 cut(s) 869
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 865
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SacI GAGCTC 1 cut(s) 894
SalI GTCGAC 1 cut(s) 100
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 2 cut(s) 135, 276
Sau3AI GATC 2 cut(s) 14, 852
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 2 cut(s) 33, 894
SfaNI GCATC 4 cut(s) 280, 292, 338, 544
SfcI CTRYAG 3 cut(s) 70, 405, 744
SgrDI CGTCGACG 1 cut(s) 100
SnaBI TACGTA 1 cut(s) 297
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 1 cut(s) 234
SseBI AGGCCT 2 cut(s) 689, 734
SsiI CCGC 7 cut(s) 44, 75, 327, 371, 566, 615, 798
SspMI CTAG 2 cut(s) 363, 594
SstI GAGCTC 1 cut(s) 894
StuI AGGCCT 2 cut(s) 689, 734
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 4 cut(s) 156, 225, 318, 618
TaaI ACNGT 3 cut(s) 99, 427, 865
TaiI ACGT 1 cut(s) 299
TaqI TCGA 2 cut(s) 101, 874
TasI AATT 1 cut(s) 234
TauI GCSGC 3 cut(s) 374, 569, 617
Tru1I TTAA 2 cut(s) 135, 276
Tru9I TTAA 2 cut(s) 135, 276
TscAI CASTG 3 cut(s) 441, 763, 870
TseI GCWGC 9 cut(s) 72, 305, 404, 533, 557, 623, 719, 743, 838
TspDTI ATGAA 3 cut(s) 407, 534, 708
TspGWI ACGGA 3 cut(s) 119, 368, 782
TspRI CASTG 3 cut(s) 441, 763, 870
Tth111I GACNNNGTC 1 cut(s) 865
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 2 cut(s) 363, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.