FvH4_4g22220

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016826
Physical Location & Seq
Reverse (-)
25104530 .. 25105976
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22220.t1

Sequence Viewer

Length: 579 bp
ATGGGCACAGAGGATTTAACTGTTCAAGTTCTCAACCTTTCTCCAAGGGTGACCCTCAGAGACCTGATTACCTTCTTCTCCTATTGTGGAACTGTTCAGAATGTCCAGCTCTTGAGAGACAAAGAGCAATCACCCTATGCCTTAGTGACTTTTTGGCAGCCTTATGCTTTCCAAACTGCTCTTCTCCTTGATGATGCTGTGTTTGGAGGGAACCCCATTTGCATATTACCTGCATGTGTTATAAAAATTCCTATAGAATCAGATGAAGACATTGATGAGTCCCAGAGCAAAAGCCAAGGGCACAACATTTCAGTGAATAAAACTATGGAGCGTATGGCTACATCGAAAGGCCTCGAAGTAATGTTGAAGGAAAGCAGGGATGAGTTGGAGGATAGCTTGAAGCTTTCGGCCGAGAAAGGAAGAAAAGTGGTAATGGAACAAGCAAGATCAGTCATTTATGCAGTTGAGCAAGCAGCAGGTCGCATGGGAAGTGCCATCATGAACAAAAACTTCGTGTCAAATGTAATTGACAAAGCCTCAAGATCTGCCTCAGACTTTGGAAACAGGAAAATGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

193

Amino Acids

21.36

Weight (kDa)

5.31

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 10 - 73 8.3e-08 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016826)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22220
malus_domestica MD16G1144300.v1.1
prunus_persica Prupe.1G211900_v2.0.a1
pyrus_communis pycom16g11360
rosa_chinensis RchiOBHm_Chr4g0428451
rosa_laevigata RLG00000007150
rosa_multiflora Rmu_sc0006844.1_g000006
rosa_roxburghii Rroxscaffold_5G00370130
rosa_rugosa Rorug04G0225300
rosa_samantha Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700
rosa_wichuraiana Rw4G024560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
Acc36I ACCTGC 2 cut(s) 238, 467
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 1 cut(s) 246
AgsI TTSAA 3 cut(s) 26, 367, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 3 cut(s) 109, 396, 403
AluI AGCT 3 cut(s) 109, 396, 403
Alw26I GTCTC 2 cut(s) 54, 111
AoxI GGCC 2 cut(s) 349, 408
ApeKI GCWGC 2 cut(s) 157, 473
ApoI RAATTY 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 61, 123
BaeGI GKGCMC 2 cut(s) 8, 303
BbsI GAAGAC 1 cut(s) 273
BbvI GCAGC 2 cut(s) 169, 485
BccI CCATC 1 cut(s) 503
BcoDI GTCTC 2 cut(s) 54, 111
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 2 cut(s) 238, 467
BglII AGATCT 1 cut(s) 542
BisI GCNGC 2 cut(s) 158, 474
BlsI GCNGC 2 cut(s) 159, 475
BmiI GGNNCC 1 cut(s) 212
BmsI GCATC 1 cut(s) 184
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 133, 523
BsaI GGTCTC 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 44, 295
BseDI CCNNGG 2 cut(s) 44, 295
BseGI GGATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 70, 564
BseSI GKGCMC 2 cut(s) 8, 303
BseX3I CGGCCG 1 cut(s) 408
BseXI GCAGC 2 cut(s) 169, 485
Bsh1285I CGRYCG 1 cut(s) 411
BshFI GGCC 2 cut(s) 351, 410
BsiEI CGRYCG 1 cut(s) 411
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 54, 111
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 2 cut(s) 351, 410
Bso31I GGTCTC 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 8, 303
Bsp143I GATC 2 cut(s) 446, 542
BspANI GGCC 2 cut(s) 351, 410
BspCNI CTCAG 2 cut(s) 69, 563
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 212
BspMI ACCTGC 2 cut(s) 238, 467
BspQI GCTCTTC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 44, 295
BssMI GATC 2 cut(s) 446, 542
BssT1I CCWWGG 2 cut(s) 44, 295
Bst4CI ACNGT 2 cut(s) 22, 94
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 3 cut(s) 56, 142, 550
BstEII GGTNACC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 2 cut(s) 449, 545
BstMAI GTCTC 2 cut(s) 54, 111
BstMBI GATC 2 cut(s) 446, 542
BstMCI CGRYCG 1 cut(s) 411
BstNSI RCATGY 1 cut(s) 237
BstPI GGTNACC 1 cut(s) 49
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 2 cut(s) 8, 303
BstV1I GCAGC 2 cut(s) 169, 485
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BstZI CGGCCG 1 cut(s) 408
BsuRI GGCC 2 cut(s) 351, 410
BtsCI GGATG 1 cut(s) 385
BtsIMutI CAGTG 1 cut(s) 318
BveI ACCTGC 2 cut(s) 238, 467
Cac8I GCNNGC 1 cut(s) 471
CciI TCATGA 1 cut(s) 498
CviAII CATG 3 cut(s) 234, 484, 499
CviJI RGCY 9 cut(s) 109, 160, 294, 338, 351, 396, 403, 410, 536
CviKI_1 RGCY 9 cut(s) 109, 160, 294, 338, 351, 396, 403, 410, 536
DdeI CTNAG 3 cut(s) 56, 142, 550
DpnI GATC 2 cut(s) 448, 544
DpnII GATC 2 cut(s) 446, 542
EaeI YGGCCR 1 cut(s) 408
EagI CGGCCG 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EclXI CGGCCG 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 44, 295
Eco147I AGGCCT 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 408
Eco91I GGTNACC 1 cut(s) 49
EcoO65I GGTNACC 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 44, 295
ErhI CCWWGG 2 cut(s) 44, 295
FaeI CATG 3 cut(s) 237, 487, 502
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 233, 483, 498
Fnu4HI GCNGC 2 cut(s) 158, 474
FokI GGATG 1 cut(s) 392
Fsp4HI GCNGC 2 cut(s) 158, 474
GluI GCNGC 2 cut(s) 158, 474
HaeIII GGCC 2 cut(s) 351, 410
Hin1II CATG 3 cut(s) 237, 487, 502
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 2 cut(s) 257, 278
HphI GGTGA 2 cut(s) 61, 123
Hpy188I TCNGA 4 cut(s) 59, 99, 262, 553
Hpy188III TCNNGA 3 cut(s) 112, 499, 540
HpyAV CCTTC 2 cut(s) 82, 361
HpyCH4III ACNGT 2 cut(s) 22, 94
HpyCH4V TGCA 4 cut(s) 222, 233, 461, 574
HpyF3I CTNAG 3 cut(s) 56, 142, 550
Hsp92II CATG 3 cut(s) 237, 487, 502
Kzo9I GATC 2 cut(s) 446, 542
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 7 cut(s) 77, 119, 243, 296, 361, 462, 550
Lsp1109I GCAGC 2 cut(s) 169, 485
LweI GCATC 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 49, 145
MalI GATC 2 cut(s) 448, 544
MboI GATC 2 cut(s) 446, 542
MboII GAAGA 4 cut(s) 67, 173, 278, 432
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 2 cut(s) 8, 303
MluCI AATT 2 cut(s) 246, 525
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 366
MnlI CCTC 7 cut(s) 4, 65, 200, 362, 382, 547, 559
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 311
NdeII GATC 2 cut(s) 446, 542
NlaIII CATG 3 cut(s) 237, 487, 502
NlaIV GGNNCC 1 cut(s) 212
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 49, 145
NspI RCATGY 1 cut(s) 237
PagI TCATGA 1 cut(s) 498
PceI AGGCCT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 257
PkrI GCNGC 2 cut(s) 159, 475
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PsiI TTATAA 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 542
RseI CAYNNNNRTG 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 2 cut(s) 158, 474
Sau3AI GATC 2 cut(s) 446, 542
SchI GAGTC 1 cut(s) 287
SduI GDGCHC 2 cut(s) 8, 303
SetI ASST 8 cut(s) 39, 66, 74, 111, 232, 398, 405, 481
SfaNI GCATC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 112, 538
SmoI CTYRAG 2 cut(s) 112, 538
Sse9I AATT 2 cut(s) 246, 525
SseBI AGGCCT 1 cut(s) 351
StuI AGGCCT 1 cut(s) 351
StyI CCWWGG 2 cut(s) 44, 295
TaaI ACNGT 2 cut(s) 22, 94
TaqI TCGA 2 cut(s) 344, 354
TasI AATT 2 cut(s) 246, 525
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 49, 145
TseI GCWGC 2 cut(s) 157, 473
Tsp45I GTSAC 2 cut(s) 49, 145
TspDTI ATGAA 2 cut(s) 279, 515
TspRI CASTG 1 cut(s) 318
XapI RAATTY 1 cut(s) 246
XceI RCATGY 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.