Prupe.1G211900_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016826
Physical Location & Seq
Reverse (-)
22497186 .. 22498508
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G211900.1

Sequence Viewer

Length: 555 bp
ATGGGAGCAGGGGATTCGATGACTGTTCAGGTTCTCAACCTTTCTCCAAGAACAACTCTTGCAGAGTTGAACACCTTCTTCTCTTATTGTGGAACTGTTCGTCAAATCCAGCTCTTGAGAGTTGAAGATCAATTACCATATGCTTTGGTGACTTTTGGCCAGCCTTATGCTTTTCAAACTGCTCTTCTCCTTAATAATGCTATCTTTGAAGGCCAACCAATTTGCATATTACCTGCATGCGCTACAAAAATTCCTATAGTTTCAGATGGAGACATTGATCACACCCAGGCCAAAAGCCAAGGGGTCATCCCAGAAGCTAATATGCTAAGAAAAAAACAAGGAAGATCTAGAGAAGTTGAAGCTGTCGGAGAAAGCAGAGTGCTCATGGGACAAACAAGATCAGCAATTTATGTTGTCGAGCAGGCAGCCGGGCGGCGCATGGGCACTGCCATTATGAACAATAACTACATTTCAACCGGGGCTGCTCGCTTCTCTGATGTTCTTGACAAAGCCTCAAGGTCTGCCTCTGAGTTGGGAATTAGGAGGAAGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

185

Amino Acids

20.01

Weight (kDa)

9.12

Isoelectric Point (pI)

44.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016826)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g22220
malus_domestica MD16G1144300.v1.1
prunus_persica Prupe.1G211900_v2.0.a1
pyrus_communis pycom16g11360
rosa_chinensis RchiOBHm_Chr4g0428451
rosa_laevigata RLG00000007150
rosa_multiflora Rmu_sc0006844.1_g000006
rosa_roxburghii Rroxscaffold_5G00370130
rosa_rugosa Rorug04G0225300
rosa_samantha Rh4AG282900 Rh4BG288600 Rh4CG304200 Rh4DG285700
rosa_wichuraiana Rw4G024560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 241
AciI CCGC 1 cut(s) 433
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 249
AgsI TTSAA 6 cut(s) 70, 125, 176, 209, 359, 474
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 3 cut(s) 112, 317, 362
AluI AGCT 3 cut(s) 112, 317, 362
Alw21I GWGCWC 1 cut(s) 384
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 3 cut(s) 157, 211, 288
ApeKI GCWGC 2 cut(s) 425, 482
ApoI RAATTY 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 74
AspLEI GCGC 2 cut(s) 242, 438
AsuC2I CCSGG 2 cut(s) 430, 478
AsuHPI GGTGA 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
Bbv12I GWGCWC 1 cut(s) 384
BbvI GCAGC 2 cut(s) 437, 469
BccI CCATC 1 cut(s) 260
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 287
BclI TGATCA 1 cut(s) 277
BcnI CCSGG 2 cut(s) 430, 478
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 241
BglII AGATCT 1 cut(s) 344
BisI GCNGC 3 cut(s) 426, 434, 483
BlsI GCNGC 3 cut(s) 427, 435, 484
Bme1390I CCNGG 3 cut(s) 287, 430, 478
BmrFI CCNGG 3 cut(s) 287, 430, 478
BpuEI CTTGAG 2 cut(s) 136, 499
BpuMI CCSGG 2 cut(s) 430, 478
BsaJI CCNNGG 3 cut(s) 285, 298, 477
BsaXI ACNNNNNCTCC 1 cut(s) 535
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 3 cut(s) 285, 298, 477
BseGI GGATG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 519
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 2 cut(s) 437, 469
BshFI GGCC 3 cut(s) 159, 213, 290
BsiHKAI GWGCWC 1 cut(s) 384
BsiSI CCGG 2 cut(s) 429, 477
BslFI GGGAC 1 cut(s) 402
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 402
BsnI GGCC 3 cut(s) 159, 213, 290
Bsp1286I GDGCHC 2 cut(s) 384, 446
Bsp143I GATC 4 cut(s) 127, 277, 344, 398
BspACI CCGC 1 cut(s) 433
BspANI GGCC 3 cut(s) 159, 213, 290
BspCNI CTCAG 1 cut(s) 520
BspMI ACCTGC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 189
BssECI CCNNGG 3 cut(s) 285, 298, 477
BssMI GATC 4 cut(s) 127, 277, 344, 398
BssT1I CCWWGG 1 cut(s) 298
Bst2UI CCWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 25, 97
Bst6I CTCTTC 1 cut(s) 189
BstC8I GCNNGC 4 cut(s) 161, 238, 423, 487
BstDEI CTNAG 2 cut(s) 326, 528
BstF5I GGATG 1 cut(s) 306
BstHHI GCGC 2 cut(s) 242, 438
BstKTI GATC 4 cut(s) 130, 280, 347, 401
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 4 cut(s) 127, 277, 344, 398
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 3 cut(s) 285, 428, 476
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 1 cut(s) 446
BstV1I GCAGC 2 cut(s) 437, 469
BstX2I RGATCY 1 cut(s) 344
BstYI RGATCY 1 cut(s) 344
BsuRI GGCC 3 cut(s) 159, 213, 290
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 1 cut(s) 241
Cac8I GCNNGC 4 cut(s) 161, 238, 423, 487
CfoI GCGC 2 cut(s) 242, 438
CviAII CATG 3 cut(s) 237, 385, 439
DdeI CTNAG 2 cut(s) 326, 528
DpnI GATC 4 cut(s) 129, 279, 346, 400
DpnII GATC 4 cut(s) 127, 277, 344, 398
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 189
EarI CTCTTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 298
ErhI CCWWGG 1 cut(s) 298
FaeI CATG 3 cut(s) 240, 388, 442
FaqI GGGAC 1 cut(s) 402
FatI CATG 3 cut(s) 236, 384, 438
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 426, 434, 483
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 426, 434, 483
FspBI CTAG 1 cut(s) 348
GlaI GCGC 2 cut(s) 241, 437
GluI GCNGC 3 cut(s) 426, 434, 483
HaeIII GGCC 3 cut(s) 159, 213, 290
HapII CCGG 2 cut(s) 429, 477
HhaI GCGC 2 cut(s) 242, 438
Hin1II CATG 3 cut(s) 240, 388, 442
Hin6I GCGC 2 cut(s) 240, 436
HinP1I GCGC 2 cut(s) 240, 436
HinfI GANTC 1 cut(s) 14
HpaII CCGG 2 cut(s) 429, 477
HphI GGTGA 1 cut(s) 160
Hpy188I TCNGA 4 cut(s) 265, 368, 496, 529
Hpy188III TCNNGA 3 cut(s) 115, 348, 503
HpyAV CCTTC 3 cut(s) 85, 203, 541
HpyCH4III ACNGT 2 cut(s) 25, 97
HpyCH4V TGCA 3 cut(s) 62, 225, 236
HpyF3I CTNAG 2 cut(s) 326, 528
Hsp92II CATG 3 cut(s) 240, 388, 442
HspAI GCGC 2 cut(s) 240, 436
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 4 cut(s) 127, 277, 344, 398
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 437, 469
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 148
MalI GATC 4 cut(s) 129, 279, 346, 400
MboI GATC 4 cut(s) 127, 277, 344, 398
MboII GAAGA 4 cut(s) 70, 137, 176, 354
MflI RGATCY 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 384, 446
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 5 cut(s) 131, 219, 249, 405, 537
MluNI TGGCCA 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 3 cut(s) 523, 535, 537
Mox20I TGGCCA 1 cut(s) 159
MroXI GAANNNNTTC 1 cut(s) 74
MscI TGGCCA 1 cut(s) 159
MseI TTAA 2 cut(s) 192, 553
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 2 cut(s) 429, 477
MspR9I CCNGG 3 cut(s) 287, 430, 478
MvaI CCWGG 1 cut(s) 287
NciI CCSGG 2 cut(s) 430, 478
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 127, 277, 344, 398
NlaIII CATG 3 cut(s) 240, 388, 442
NmuCI GTSAC 1 cut(s) 148
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 3 cut(s) 427, 435, 484
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PsrI GAACNNNNNNTAC 2 cut(s) 449, 481
PsuI RGATCY 1 cut(s) 344
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 192, 553
SatI GCNGC 3 cut(s) 426, 434, 483
Sau3AI GATC 4 cut(s) 127, 277, 344, 398
ScrFI CCNGG 3 cut(s) 287, 430, 478
SduI GDGCHC 2 cut(s) 384, 446
SetI ASST 8 cut(s) 33, 42, 77, 114, 235, 319, 364, 521
SfcI CTRYAG 1 cut(s) 255
SmlI CTYRAG 2 cut(s) 115, 514
SmoI CTYRAG 2 cut(s) 115, 514
SphI GCATGC 1 cut(s) 240
Sse9I AATT 5 cut(s) 131, 219, 249, 405, 537
SsiI CCGC 1 cut(s) 433
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 285, 428, 476
StyI CCWWGG 1 cut(s) 298
TaaI ACNGT 2 cut(s) 25, 97
TaqI TCGA 2 cut(s) 17, 417
TasI AATT 5 cut(s) 131, 219, 249, 405, 537
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 192, 553
Tru9I TTAA 2 cut(s) 192, 553
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 425, 482
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 470
TspRI CASTG 1 cut(s) 451
XapI RAATTY 1 cut(s) 249
XbaI TCTAGA 1 cut(s) 347
XceI RCATGY 1 cut(s) 240
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.