Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

38728987 .. 38739532

Gene Structure 10546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0225300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGACTCCACTCCAGCTCAGCGTCGCCTCGAAGCCATTAACGGCCACCTCATCTCCGACGCCGACTCCCTCTCCATTCTCCGCCCCAACGCCACCGCCGGCGAGTTCGTATCCGAGCAAGGGTACAGTGTGGTGCTTCCAGAGAAACTAGATACAGGAAAATGGAATGTATACAGATCTGCGCGTTCTCCTTTGAAGCTTGTTAGTAGATTCCCTGATCATCCCCAAATTGCTACGCTTCATGATAATTTTGTGCACTCAGTTGATACGTTCAGAGATTACAAATATTTGGGAACAAGAATTCGGGTTGATGGAACAGTTGGAGAATACAAATGGATGACGTTTGGAGAAGCAGATACTGCTCGGTCAGCAATAGGTTCTGGCCTCATATATCATGGGATACCAAAGGGATCTTGCGTTGGGTTGTATTTTATTAACAGACCGGAGTGGATGATTGTTGATCATGCCTGCTCTGCATATTCTTACATATCAGTTCCTTTGTATGACACTCTAGGTCCAGATGCTGTCAAGTACATTGCAAATCATGCTGTTGTACAAGTTATATTTTGCGTGCCCGAAACATTGAATAGTATATTGAGCTTCCTGTCAGATATTCCAACTGTACGCCTCATTGTGGTTGTTGGAGGCATAGATGAACAAATACCATCCCTTCCACCTTCAACGGGAGTGAAGGTTGTAACATATTCAACATTGCTCAATCAGGGCCGTAGTAGCATGCAGCCTTTTTGCCCACCAAAATCGGATGATATTGCAACAATTTGCTACACAAGTGGCACAACTGGCACCCCAAAGGGAGCTGTATTGTCTCACGGAAACTTGATTGCAAGTGTTGCTGGGGCCACTTTTGGTATCCAGTTCTACCCCTCTGATGTTTACATATCATATCTTCCTTTGGCACACATTTATGAGCGGGCTAACCAGGTCATGACGGTACATTTCGGAGTTGCTGTTGGATTCTACCAAGGGGATAATATGAAATTGATGGATGATATGGCTGCTCTAAGACCTACTATCTTCTGCAGTGTCCCTAGGCTGTATAATCGAATATATGCTGGTATCACAAATGCTGTAAAGACATCAGGTGTGCTGAGGGAGAGGCTATTTAATGCTGCTTACAATGCCAAGAAGAAGGCATTATTAAGTGGAAAAAATCCATCTCCCATGTGGGACAGGTTGGTGTTTAATAAGATAAAGGCTAAGCTAGGAGGACGTGTTCGTTTTATGGCATCAGGTGCTTCACCCTTGTCTCCTGATGTTATGGACTTTTTAAAAATATGCTTTGGGGGTGACGTAAATGAAGGGTATGGAATGACTGAGACTTCCTGTGTTATTAGTGCTATGGACACCGGTGACAACTTATCTGGTCATGTTGGCTCTCCTAGTCCAGCTTGCGAAATCAAGCTTGTTGATGTACCAGAAATGAACTACACATGTGATGATCAACCATATCCACGCGGTGAAATCTGTGTCAGGGGTCCTATTATTTTCCAAGGCTATCACAAAGATGAAGTGCAGACGAGAGAAGTCATTGACGAAGATGGGTGGCTTCATACCGGAGACATTGGGTCATGGTTACCTGGTGGTCGTCTGAAAATTATTGATAGGAAGAAGAACATTTTCAAGTTGGCACAGGGAGAGTATATAGCTCCAGAGAAAATTGAGAATGTTTATGCCAAGTGCAAGTTTGTTGCCCAGTGCTTTGTACATGGGGACAGCCTAAATTCTTCTTTGGTAGCAATTGTCTCAGTTGACCCAGATGTGTTGAAAGCTTGGGCTGATTCTGAAGGCATAAAGTATGAAGATTTAGGGCAACTGTGTAATGATCCAAGAGCAAGGGCGGCTGTATTGGCTGATATGGATGCTATTGGCAGGGAAGCTCAGTTGAGAGGTTTTGAATTTGTAAAAGCCGTGACGCTGACTGTTGAACCGTTCACACTGGAGAATGGTCTGCTCACTCCAACATTTAAGATCAAGAGACCACAAGCAAAGGAATACTTTGCAAAAGCAATATCCAATATGTATTCGGAGCTTGCTACTTCTGATCCTGCCCCTTCAAAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0002831 GO:0002833 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009791 GO:0009814 GO:0009845 GO:0010154 GO:0012505 GO:0016192 GO:0022414 GO:0031347 GO:0031349 GO:0031410 GO:0031982 GO:0032101 GO:0032103 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0046983 GO:0048316 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0061458 GO:0065007 GO:0080001 GO:0080134 GO:0090351 GO:0097708 GO:0098542 GO:1900424 GO:1900426 GO:1903335

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vta1

Protein Analysis

694

Amino Acids

76.13

Weight (kDa)

6.3

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	108 - 507	4e-86	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	803
AccBSI	CCGCTC	1 cut(s)	931
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	2 cut(s)	184, 1476
AciI	CCGC	5 cut(s)	82, 96, 931, 1476, 1859
AclWI	GGATC	3 cut(s)	418, 1838, 2057
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	300, 1741, 1916
AcuI	CTGAAG	1 cut(s)	1824
AcyI	GRCGYC	1 cut(s)	60
AdeI	CACNNNGTG	1 cut(s)	1478
AfaI	GTAC	7 cut(s)	125, 533, 555, 624, 954, 1434, 1725
AfiI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
AflIII	ACRYGT	2 cut(s)	1231, 1451
AgeI	ACCGGT	1 cut(s)	1367
AgsI	TTSAA	9 cut(s)	196, 586, 681, 708, 1642, 1786, 1916, 1946, 2076
AhdI	GACNNNNNGTC	1 cut(s)	1585
AjiI	CACGTC	1 cut(s)	1232
AjnI	CCWGG	2 cut(s)	939, 1597
AloI	GAACNNNNNNTCC	2 cut(s)	1218, 1250
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	6 cut(s)	831, 1272, 1331, 1572, 1768, 1990
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	3 cut(s)	418, 1838, 2057
AlwNI	CAGNNNCTG	2 cut(s)	359, 524
AoxI	GGCC	4 cut(s)	43, 382, 724, 858
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	739, 1016, 1130
ApoI	RAATTY	3 cut(s)	300, 1741, 1916
AsiGI	ACCGGT	1 cut(s)	1367
Asp700I	GAANNNNTTC	1 cut(s)	1637
AspA2I	CCTAGG	1 cut(s)	1049
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	4 cut(s)	515, 724, 858, 1496
AsuHPI	GGTGA	4 cut(s)	1251, 1319, 1382, 1490
AvaII	GGWCC	2 cut(s)	515, 1496
AvrII	CCTAGG	1 cut(s)	1049
BaeGI	GKGCMC	2 cut(s)	258, 576
BanI	GGYRCC	1 cut(s)	803
Bbv12I	GWGCWC	1 cut(s)	258
BbvCI	CCTCAGC	1 cut(s)	1109
BbvI	GCAGC	3 cut(s)	751, 1003, 1117
BccI	CCATC	5 cut(s)	305, 673, 997, 1183, 1553
BceAI	ACGGC	3 cut(s)	58, 711, 1913
BciT130I	CCWGG	2 cut(s)	941, 1599
BciVI	GTATCC	3 cut(s)	121, 393, 881
BclI	TGATCA	3 cut(s)	217, 460, 1459
BcoDI	GTCTC	6 cut(s)	831, 1272, 1331, 1572, 1768, 1990
BfaI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
BfmI	CTRYAG	1 cut(s)	1039
BfuI	GTATCC	3 cut(s)	121, 393, 881
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	4 cut(s)	740, 1017, 1131, 1860
BlnI	CCTAGG	1 cut(s)	1049
BlpI	GCTNAGC	2 cut(s)	18, 1218
BlsI	GCNGC	4 cut(s)	741, 1018, 1132, 1861
Bme1390I	CCNGG	2 cut(s)	941, 1599
Bme18I	GGWCC	2 cut(s)	515, 1496
BmeRI	GACNNNNNGTC	1 cut(s)	1585
BmgBI	CACGTC	1 cut(s)	1232
BmgT120I	GGNCC	4 cut(s)	515, 724, 858, 1496
BmiI	GGNNCC	3 cut(s)	805, 859, 1497
BmrFI	CCNGG	2 cut(s)	941, 1599
BmrI	ACTGGG	1 cut(s)	1708
BmsI	GCATC	3 cut(s)	511, 1256, 1870
BmuI	ACTGGG	1 cut(s)	1708
BpmI	CTGGAG	2 cut(s)	1653, 1979
Bpu10I	CCTNAGC	1 cut(s)	1109
Bpu1102I	GCTNAGC	2 cut(s)	18, 1218
BsaHI	GRCGYC	1 cut(s)	60
BsaI	GGTCTC	1 cut(s)	1990
BsaJI	CCNNGG	3 cut(s)	982, 1049, 1510
BsaWI	WCCGGW	3 cut(s)	442, 1367, 1574
Bsc4I	CCNNNNNNNGG	3 cut(s)	120, 634, 683
Bse118I	RCCGGY	2 cut(s)	98, 1367
Bse1I	ACTGG	4 cut(s)	805, 874, 1714, 1962
Bse3DI	GCAATG	2 cut(s)	534, 710
BseBI	CCWGG	2 cut(s)	941, 1599
BseDI	CCNNGG	3 cut(s)	982, 1049, 1510
BseGI	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BseLI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
BseMI	GCAATG	2 cut(s)	534, 710
BseMII	CTCAG	6 cut(s)	32, 273, 1100, 1326, 1779, 1913
BseNI	ACTGG	4 cut(s)	805, 874, 1714, 1962
BseSI	GKGCMC	2 cut(s)	258, 576
BseXI	GCAGC	3 cut(s)	751, 1003, 1117
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	1553
Bsh1236I	CGCG	2 cut(s)	184, 1476
BshFI	GGCC	4 cut(s)	45, 384, 726, 860
BshNI	GGYRCC	1 cut(s)	803
BshTI	ACCGGT	1 cut(s)	1367
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	99, 443, 1368, 1575
BslFI	GGGAC	3 cut(s)	1031, 1202, 1745
BslI	CCNNNNNNNGG	3 cut(s)	120, 634, 683
BsmAI	GTCTC	6 cut(s)	831, 1272, 1331, 1572, 1768, 1990
BsmFI	GGGAC	3 cut(s)	1031, 1202, 1745
BsnI	GGCC	4 cut(s)	45, 384, 726, 860
Bso31I	GGTCTC	1 cut(s)	1990
Bsp1286I	GDGCHC	2 cut(s)	258, 576
Bsp1407I	TGTACA	2 cut(s)	553, 1723
Bsp143I	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
Bsp1720I	GCTNAGC	2 cut(s)	18, 1218
BspACI	CCGC	5 cut(s)	82, 96, 931, 1476, 1859
BspANI	GGCC	4 cut(s)	45, 384, 726, 860
BspCNI	CTCAG	6 cut(s)	31, 272, 1101, 1327, 1778, 1912
BspFNI	CGCG	2 cut(s)	184, 1476
BspHI	TCATGA	2 cut(s)	241, 945
BspLI	GGNNCC	3 cut(s)	805, 859, 1497
BspMAI	CTGCAG	1 cut(s)	1043
BspPI	GGATC	3 cut(s)	418, 1838, 2057
BspT107I	GGYRCC	1 cut(s)	803
BspTNI	GGTCTC	1 cut(s)	1990
BsrBI	CCGCTC	1 cut(s)	931
BsrDI	GCAATG	2 cut(s)	534, 710
BsrFI	RCCGGY	2 cut(s)	98, 1367
BsrGI	TGTACA	2 cut(s)	553, 1723
BsrI	ACTGG	4 cut(s)	805, 874, 1714, 1962
BssAI	RCCGGY	2 cut(s)	98, 1367
BssECI	CCNNGG	3 cut(s)	982, 1049, 1510
BssMI	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
BssNAI	GTATAC	1 cut(s)	172
BssNI	GRCGYC	1 cut(s)	60
BssT1I	CCWWGG	3 cut(s)	982, 1049, 1510
Bst1107I	GTATAC	1 cut(s)	172
Bst2UI	CCWGG	2 cut(s)	941, 1599
Bst4CI	ACNGT	8 cut(s)	128, 319, 622, 952, 1836, 1942, 1950, 2082
BstACI	GRCGYC	1 cut(s)	60
BstAPI	GCANNNNNTGC	4 cut(s)	359, 545, 851, 1253
BstAUI	TGTACA	2 cut(s)	553, 1723
BstC8I	GCNNGC	7 cut(s)	100, 469, 572, 737, 933, 1411, 2052
BstDEI	CTNAG	8 cut(s)	18, 259, 1022, 1109, 1218, 1335, 1765, 1899
BstEII	GGTNACC	1 cut(s)	1593
BstF5I	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BstFNI	CGCG	2 cut(s)	184, 1476
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	8 cut(s)	179, 220, 413, 463, 1462, 1846, 1992, 2065
BstMAI	GTCTC	6 cut(s)	831, 1272, 1331, 1572, 1768, 1990
BstMBI	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
BstNI	CCWGG	2 cut(s)	941, 1599
BstNSI	RCATGY	2 cut(s)	739, 1455
BstPI	GGTNACC	1 cut(s)	1593
BstSCI	CCNGG	2 cut(s)	939, 1597
BstSFI	CTRYAG	1 cut(s)	1039
BstSLI	GKGCMC	2 cut(s)	258, 576
BstUI	CGCG	2 cut(s)	184, 1476
BstV1I	GCAGC	3 cut(s)	751, 1003, 1117
BstX2I	RGATCY	2 cut(s)	176, 410
BstYI	RGATCY	2 cut(s)	176, 410
BstZ17I	GTATAC	1 cut(s)	172
BsuI	GTATCC	3 cut(s)	121, 393, 881
BsuRI	GGCC	4 cut(s)	45, 384, 726, 860
BtrI	CACGTC	1 cut(s)	1232
BtsCI	GGATG	7 cut(s)	220, 342, 456, 665, 769, 1012, 1885
BtsI	GCAGTG	1 cut(s)	1048
BtsIMutI	CAGTG	4 cut(s)	133, 1048, 1721, 1955
Cac8I	GCNNGC	7 cut(s)	100, 469, 572, 737, 933, 1411, 2052
CaiI	CAGNNNCTG	2 cut(s)	359, 524
CciI	TCATGA	2 cut(s)	241, 945
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	98, 1367
Cfr13I	GGNCC	4 cut(s)	515, 724, 858, 1496
CseI	GACGC	3 cut(s)	11, 68, 1942
CsiI	ACCWGGT	2 cut(s)	939, 1597
Csp6I	GTAC	7 cut(s)	124, 532, 554, 623, 953, 1433, 1724
CspAI	ACCGGT	1 cut(s)	1367
CviQI	GTAC	7 cut(s)	124, 532, 554, 623, 953, 1433, 1724
DdeI	CTNAG	8 cut(s)	18, 259, 1022, 1109, 1218, 1335, 1765, 1899
DpnI	GATC	8 cut(s)	178, 219, 412, 462, 1461, 1845, 1991, 2064
DpnII	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
DraI	TTTAAA	1 cut(s)	1290
DraIII	CACNNNGTG	1 cut(s)	1478
DriI	GACNNNNNGTC	1 cut(s)	1585
EaeI	YGGCCR	1 cut(s)	43
Eam1105I	GACNNNNNGTC	1 cut(s)	1585
EciI	GGCGGA	1 cut(s)	71
Eco130I	CCWWGG	3 cut(s)	982, 1049, 1510
Eco31I	GGTCTC	1 cut(s)	1990
Eco47I	GGWCC	2 cut(s)	515, 1496
Eco57I	CTGAAG	1 cut(s)	1824
Eco91I	GGTNACC	1 cut(s)	1593
EcoO109I	RGGNCCY	1 cut(s)	1496
EcoO65I	GGTNACC	1 cut(s)	1593
EcoRI	GAATTC	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	939, 1597
EcoT14I	CCWWGG	3 cut(s)	982, 1049, 1510
ErhI	CCWWGG	3 cut(s)	982, 1049, 1510
FalI	AAGNNNNNCTT	2 cut(s)	2000, 2032
FaqI	GGGAC	3 cut(s)	1031, 1202, 1745
FauI	CCCGC	1 cut(s)	924
FbaI	TGATCA	3 cut(s)	217, 460, 1459
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	4 cut(s)	740, 1017, 1131, 1860
FokI	GGATG	7 cut(s)	207, 349, 463, 652, 776, 1019, 1892
Fsp4HI	GCNGC	4 cut(s)	740, 1017, 1131, 1860
FspBI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	4 cut(s)	740, 1017, 1131, 1860
GsaI	CCCAGC	1 cut(s)	858
GsuI	CTGGAG	2 cut(s)	1653, 1979
HaeIII	GGCC	4 cut(s)	45, 384, 726, 860
HapII	CCGG	4 cut(s)	99, 443, 1368, 1575
HgaI	GACGC	3 cut(s)	11, 68, 1942
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	1771
HindII	GTYRAC	1 cut(s)	1771
HindIII	AAGCTT	3 cut(s)	197, 1421, 1788
HinfI	GANTC	5 cut(s)	5, 65, 210, 975, 1799
HpaII	CCGG	4 cut(s)	99, 443, 1368, 1575
HphI	GGTGA	4 cut(s)	1251, 1319, 1382, 1490
Hpy166II	GTNNAC	5 cut(s)	172, 256, 895, 1771, 1953
Hpy188III	TCNNGA	7 cut(s)	140, 242, 518, 946, 1271, 1670, 1993
Hpy8I	GTNNAC	5 cut(s)	172, 256, 895, 1771, 1953
Hpy99I	CGWCG	2 cut(s)	27, 62
HpyAV	CCTTC	7 cut(s)	680, 685, 687, 1144, 1313, 1799, 2082
HpyCH4III	ACNGT	8 cut(s)	128, 319, 622, 952, 1836, 1942, 1950, 2082
HpyCH4IV	ACGT	4 cut(s)	269, 341, 1231, 1311
HpyF3I	CTNAG	8 cut(s)	18, 259, 1022, 1109, 1218, 1335, 1765, 1899
HpySE526I	ACGT	4 cut(s)	269, 341, 1231, 1311
Hsp92I	GRCGYC	1 cut(s)	60
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Ksp22I	TGATCA	3 cut(s)	217, 460, 1459
Kzo9I	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
LmnI	GCTCC	3 cut(s)	815, 1672, 2047
Lsp1109I	GCAGC	3 cut(s)	751, 1003, 1117
LweI	GCATC	3 cut(s)	511, 1256, 1870
MabI	ACCWGGT	2 cut(s)	939, 1597
MaeI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
MaeII	ACGT	4 cut(s)	269, 341, 1231, 1311
MaeIII	GTNAC	5 cut(s)	697, 1307, 1370, 1593, 1930
MalI	GATC	8 cut(s)	178, 219, 412, 462, 1461, 1845, 1991, 2064
MbiI	CCGCTC	1 cut(s)	931
MboI	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
MboII	GAAGA	8 cut(s)	899, 1027, 1159, 1568, 1639, 1642, 1737, 1832
MfeI	CAATTG	1 cut(s)	1758
MflI	RGATCY	2 cut(s)	176, 410
MhlI	GDGCHC	2 cut(s)	258, 576
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	6 cut(s)	81, 301, 622, 641, 952, 2003
MreI	CGCCGGCG	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	1637
MseI	TTAA	7 cut(s)	39, 435, 1125, 1160, 1203, 1289, 1986
MslI	CAYNNNNRTG	2 cut(s)	924, 1524
MspI	CCGG	4 cut(s)	99, 443, 1368, 1575
MspR9I	CCNGG	2 cut(s)	941, 1599
MunI	CAATTG	1 cut(s)	1758
MvaI	CCWGG	2 cut(s)	941, 1599
MvnI	CGCG	2 cut(s)	184, 1476
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
NgoMIV	GCCGGC	1 cut(s)	98
NlaIV	GGNNCC	3 cut(s)	805, 859, 1497
NmuCI	GTSAC	3 cut(s)	1307, 1370, 1930
NspI	RCATGY	2 cut(s)	739, 1455
PaeI	GCATGC	1 cut(s)	739
PagI	TCATGA	2 cut(s)	241, 945
PciI	ACATGT	1 cut(s)	1451
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	1637
PfeI	GAWTC	3 cut(s)	210, 975, 1799
PinAI	ACCGGT	1 cut(s)	1367
PkrI	GCNGC	4 cut(s)	741, 1018, 1132, 1861
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
PpuMI	RGGWCCY	1 cut(s)	1496
PscI	ACATGT	1 cut(s)	1451
Psp5II	RGGWCCY	1 cut(s)	1496
Psp6I	CCWGG	2 cut(s)	939, 1597
PspEI	GGTNACC	1 cut(s)	1593
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	2 cut(s)	939, 1597
PspN4I	GGNNCC	3 cut(s)	805, 859, 1497
PspPI	GGNCC	4 cut(s)	515, 724, 858, 1496
PspPPI	RGGWCCY	1 cut(s)	1496
PstI	CTGCAG	1 cut(s)	1043
PstNI	CAGNNNCTG	2 cut(s)	359, 524
PsuI	RGATCY	2 cut(s)	176, 410
RsaI	GTAC	7 cut(s)	125, 533, 555, 624, 954, 1434, 1725
RsaNI	GTAC	7 cut(s)	124, 532, 554, 623, 953, 1433, 1724
RseI	CAYNNNNRTG	2 cut(s)	924, 1524
SaqAI	TTAA	7 cut(s)	39, 435, 1125, 1160, 1203, 1289, 1986
SatI	GCNGC	4 cut(s)	740, 1017, 1131, 1860
Sau3AI	GATC	8 cut(s)	176, 217, 410, 460, 1459, 1843, 1989, 2062
Sau96I	GGNCC	4 cut(s)	515, 724, 858, 1496
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	941, 1599
SduI	GDGCHC	2 cut(s)	258, 576
SexAI	ACCWGGT	2 cut(s)	939, 1597
SfaNI	GCATC	3 cut(s)	511, 1256, 1870
SfcI	CTRYAG	1 cut(s)	1039
SgrAI	CRCCGGYG	2 cut(s)	98, 1367
SinI	GGWCC	2 cut(s)	515, 1496
SmiMI	CAYNNNNRTG	2 cut(s)	924, 1524
SphI	GCATGC	1 cut(s)	739
SsiI	CCGC	5 cut(s)	82, 96, 931, 1476, 1859
SspI	AATATT	1 cut(s)	287
SspMI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401
StyD4I	CCNGG	2 cut(s)	939, 1597
StyI	CCWWGG	3 cut(s)	982, 1049, 1510
TaaI	ACNGT	8 cut(s)	128, 319, 622, 952, 1836, 1942, 1950, 2082
TaiI	ACGT	4 cut(s)	272, 344, 1234, 1314
TaqI	TCGA	2 cut(s)	30, 1063
TaqII	GACCGA	1 cut(s)	354
TatI	WGTACW	3 cut(s)	531, 553, 1723
TauI	GCSGC	1 cut(s)	1862
TfiI	GAWTC	3 cut(s)	210, 975, 1799
Tru1I	TTAA	7 cut(s)	39, 435, 1125, 1160, 1203, 1289, 1986
Tru9I	TTAA	7 cut(s)	39, 435, 1125, 1160, 1203, 1289, 1986
TscAI	CASTG	4 cut(s)	133, 1048, 1721, 1962
TseFI	GTSAC	3 cut(s)	1307, 1370, 1930
TseI	GCWGC	3 cut(s)	739, 1016, 1130
Tsp45I	GTSAC	3 cut(s)	1307, 1370, 1930
TspDTI	ATGAA	8 cut(s)	230, 669, 1010, 1332, 1457, 1542, 1559, 1833
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	4 cut(s)	133, 1048, 1721, 1962
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	515, 1496
XapI	RAATTY	3 cut(s)	300, 1741, 1916
XceI	RCATGY	2 cut(s)	739, 1455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1182
XmaJI	CCTAGG	1 cut(s)	1049
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	1637
XspI	CTAG	5 cut(s)	149, 512, 1050, 1223, 1401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.