Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006844.1

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

2903 .. 3847

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006844.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggattgcagtgctattgaactgaaggttatctcctgtaaggatctcaaagccttcaatttctttcagaagctttcagtctatgcagacgtctccatctccaatgatgaaatcaagaaagagcagcaacagcaagaacatctgcagcagcgccagaaaacaccagtcgacagagatggagatgggaacccagagtggaatcatacgatgagcttcgatacgaaagccatgtcatcgctcgatgatcaatgggatcactggtatatcaagttcgacatgcgcaatgatggtgcggttttggggaagagccttggcaaagtgcaggtacctttgaaagagttgatcgaggagttcaatggggcagtcaggtttatgagctatcaagtcaagactggtgatgggaagtctaatggggtcttagatttttcttaccatgtaattgggaagaagagcaccaacaacaatggaattcctgattccgtagtatccgaaaaaaccaatgttcctgatcctgctggtaaagttcaggttcaatctctttaccccactttagaagtagaatcccagtcccgggatctgttctatccttcattagctgaggtttccagtcccgtaccaaaaattccagtcctttctccaaagcttagcactcaattttcgcttcctcctcctcctcctcctcctcatcatcatcatcatcatcatcatcctcctcctccccctccatgtcaagcattctcgccatttgttcaacctccgaggatgtactggcatccatcagagttcacaaatcatggttgcaatttctgtagcaaccctgccgggttaggacaagttgggatggtggattataagggtccatggaggactaattttccagggaatagaagtgatcttcttcaagctccagatccggaaactactaccaatggcagatgctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

314

Amino Acids

35.26

Weight (kDa)

6.26

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
AatII	GACGTC	1 cut(s)	93
Acc16I	TGCGCA	1 cut(s)	281
Acc36I	ACCTGC	1 cut(s)	313
Acc65I	GGTACC	1 cut(s)	325
AccB1I	GGYRCC	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	913
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	5 cut(s)	51, 261, 503, 582, 905
AcsI	RAATTY	2 cut(s)	468, 621
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	90
AfaI	GTAC	3 cut(s)	327, 615, 767
AfiI	CCNNNNNNNGG	2 cut(s)	570, 571
AgsI	TTSAA	7 cut(s)	20, 58, 334, 355, 533, 752, 902
AjnI	CCWGG	1 cut(s)	877
AluBI	AGCT	6 cut(s)	73, 213, 378, 596, 643, 905
AluI	AGCT	6 cut(s)	73, 213, 378, 596, 643, 905
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	5 cut(s)	51, 261, 503, 582, 905
Ama87I	CYCGRG	1 cut(s)	570
Aor13HI	TCCGGA	1 cut(s)	913
ApeKI	GCWGC	3 cut(s)	124, 145, 148
ApoI	RAATTY	2 cut(s)	468, 621
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp718I	GGTACC	1 cut(s)	325
AspLEI	GCGC	2 cut(s)	153, 282
AspS9I	GGNCC	1 cut(s)	857
AsuC2I	CCSGG	3 cut(s)	571, 572, 823
AsuHPI	GGTGA	1 cut(s)	407
AvaI	CYCGRG	1 cut(s)	570
AvaII	GGWCC	1 cut(s)	857
BanI	GGYRCC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	455
BbvCI	CCTCAGC	1 cut(s)	597
BbvI	GCAGC	3 cut(s)	136, 157, 160
BccI	CCATC	7 cut(s)	104, 170, 176, 281, 392, 784, 835
BciT130I	CCWGG	1 cut(s)	879
BciVI	GTATCC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	3 cut(s)	571, 572, 823
BcoDI	GTCTC	1 cut(s)	97
BfmI	CTRYAG	2 cut(s)	143, 808
BfoI	RGCGCY	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	313
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	3 cut(s)	125, 146, 149
BlpI	GCTNAGC	1 cut(s)	644
BlsI	GCNGC	3 cut(s)	126, 147, 150
Bme1390I	CCNGG	4 cut(s)	571, 572, 823, 879
Bme18I	GGWCC	1 cut(s)	857
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	857
BmiI	GGNNCC	3 cut(s)	188, 327, 858
BmrFI	CCNGG	4 cut(s)	571, 572, 823, 879
BmrI	ACTGGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	781, 926
BmuI	ACTGGG	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu1102I	GCTNAGC	1 cut(s)	644
BpuMI	CCSGG	3 cut(s)	571, 572, 823
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	5 cut(s)	310, 570, 758, 860, 878
BsaWI	WCCGGW	1 cut(s)	913
Bsc4I	CCNNNNNNNGG	2 cut(s)	570, 571
Bse1I	ACTGG	7 cut(s)	164, 263, 397, 565, 606, 626, 773
Bse3DI	GCAATG	1 cut(s)	289
BseAI	TCCGGA	1 cut(s)	913
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	5 cut(s)	310, 570, 758, 860, 878
BseGI	GGATG	4 cut(s)	706, 768, 772, 846
BseLI	CCNNNNNNNGG	2 cut(s)	570, 571
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	7 cut(s)	164, 263, 397, 565, 606, 626, 773
BseRI	GAGGAG	9 cut(s)	362, 657, 660, 663, 666, 669, 672, 702, 705
BseXI	GCAGC	3 cut(s)	136, 157, 160
BsgI	GTGCAG	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	455
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	3 cut(s)	571, 822, 914
BslFI	GGGAC	2 cut(s)	553, 594
BslI	CCNNNNNNNGG	2 cut(s)	570, 571
BsmAI	GTCTC	1 cut(s)	97
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	553, 594
BsmI	GAATGC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	570
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp13I	TCCGGA	1 cut(s)	913
Bsp143I	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
Bsp1720I	GCTNAGC	1 cut(s)	644
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	589
BspEI	TCCGGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	188, 327, 858
BspMAI	CTGCAG	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	5 cut(s)	51, 261, 503, 582, 905
BspQI	GCTCTTC	2 cut(s)	299, 443
BspT107I	GGYRCC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	289
BsrI	ACTGG	7 cut(s)	164, 263, 397, 565, 606, 626, 773
BssECI	CCNNGG	5 cut(s)	310, 570, 758, 860, 878
BssMI	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	2 cut(s)	310, 860
Bst2UI	CCWGG	1 cut(s)	879
Bst6I	CTCTTC	2 cut(s)	299, 443
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	418, 597, 644
BstDSI	CCRYGG	1 cut(s)	860
BstF5I	GGATG	4 cut(s)	706, 768, 772, 846
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	2 cut(s)	153, 282
BstKTI	GATC	8 cut(s)	46, 247, 256, 345, 511, 577, 895, 913
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	130
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	4 cut(s)	569, 570, 821, 877
BstSFI	CTRYAG	2 cut(s)	143, 808
BstV1I	GCAGC	3 cut(s)	136, 157, 160
BstX2I	RGATCY	3 cut(s)	43, 574, 910
BstXI	CCANNNNNNTGG	1 cut(s)	440
BstYI	RGATCY	3 cut(s)	43, 574, 910
BsuI	GTATCC	1 cut(s)	496
BtgI	CCRYGG	1 cut(s)	860
BtgZI	GCGATG	1 cut(s)	219
BtsCI	GGATG	4 cut(s)	706, 768, 772, 846
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 256
BveI	ACCTGC	1 cut(s)	313
CfoI	GCGC	2 cut(s)	153, 282
Cfr13I	GGNCC	1 cut(s)	857
Cfr9I	CCCGGG	1 cut(s)	570
Csp6I	GTAC	3 cut(s)	326, 614, 766
CviAII	CATG	6 cut(s)	229, 277, 434, 726, 794, 861
CviJI	RGCY	9 cut(s)	53, 73, 213, 227, 309, 378, 596, 643, 905
CviKI_1	RGCY	9 cut(s)	53, 73, 213, 227, 309, 378, 596, 643, 905
CviQI	GTAC	3 cut(s)	326, 614, 766
DdeI	CTNAG	3 cut(s)	418, 597, 644
DpnI	GATC	8 cut(s)	45, 246, 255, 344, 510, 576, 894, 912
DpnII	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
Eam1104I	CTCTTC	2 cut(s)	299, 443
EarI	CTCTTC	2 cut(s)	299, 443
Eco130I	CCWWGG	2 cut(s)	310, 860
Eco47I	GGWCC	1 cut(s)	857
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	570
EcoRI	GAATTC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	2 cut(s)	310, 860
ErhI	CCWWGG	2 cut(s)	310, 860
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	6 cut(s)	232, 280, 437, 729, 797, 864
FaqI	GGGAC	2 cut(s)	553, 594
FatI	CATG	6 cut(s)	228, 276, 433, 725, 793, 860
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	3 cut(s)	125, 146, 149
FokI	GGATG	4 cut(s)	693, 759, 775, 853
Fsp4HI	GCNGC	3 cut(s)	125, 146, 149
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	2 cut(s)	152, 281
GluI	GCNGC	3 cut(s)	125, 146, 149
GsuI	CTGGAG	1 cut(s)	891
HaeII	RGCGCY	1 cut(s)	154
HapII	CCGG	3 cut(s)	571, 822, 914
HhaI	GCGC	2 cut(s)	153, 282
Hin1I	GRCGYC	1 cut(s)	90
Hin1II	CATG	6 cut(s)	232, 280, 437, 729, 797, 864
Hin6I	GCGC	2 cut(s)	151, 280
HinP1I	GCGC	2 cut(s)	151, 280
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HindIII	AAGCTT	2 cut(s)	71, 641
HinfI	GANTC	3 cut(s)	199, 476, 560
HpaII	CCGG	3 cut(s)	571, 822, 914
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	2 cut(s)	169, 786
Hpy188I	TCNGA	4 cut(s)	69, 490, 759, 781
Hpy188III	TCNNGA	6 cut(s)	115, 388, 473, 506, 908, 914
Hpy8I	GTNNAC	2 cut(s)	169, 786
HpyAV	CCTTC	3 cut(s)	19, 64, 597
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	5 cut(s)	9, 86, 145, 322, 801
HpyF10VI	GCNNNNNNNGC	1 cut(s)	130
HpyF3I	CTNAG	3 cut(s)	418, 597, 644
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	90
Hsp92II	CATG	6 cut(s)	232, 280, 437, 729, 797, 864
HspAI	GCGC	2 cut(s)	151, 280
Kpn2I	TCCGGA	1 cut(s)	913
KpnI	GGTACC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
LguI	GCTCTTC	2 cut(s)	299, 443
LmnI	GCTCC	1 cut(s)	910
Lsp1109I	GCAGC	3 cut(s)	136, 157, 160
LweI	GCATC	2 cut(s)	781, 926
MaeII	ACGT	1 cut(s)	90
MalI	GATC	8 cut(s)	45, 246, 255, 344, 510, 576, 894, 912
MboI	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
MboII	GAAGA	5 cut(s)	316, 457, 460, 887, 890
MflI	RGATCY	3 cut(s)	43, 574, 910
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	7 cut(s)	58, 438, 468, 621, 653, 802, 871
MroI	TCCGGA	1 cut(s)	913
MspI	CCGG	3 cut(s)	571, 822, 914
MspR9I	CCNGG	4 cut(s)	571, 572, 823, 879
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	1 cut(s)	879
MwoI	GCNNNNNNNGC	1 cut(s)	130
NciI	CCSGG	3 cut(s)	571, 572, 823
NcoI	CCATGG	1 cut(s)	860
NdeII	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
NlaIII	CATG	6 cut(s)	232, 280, 437, 729, 797, 864
NlaIV	GGNNCC	3 cut(s)	188, 327, 858
NsbI	TGCGCA	1 cut(s)	281
NspI	RCATGY	1 cut(s)	280
PciSI	GCTCTTC	2 cut(s)	299, 443
PctI	GAATGC	1 cut(s)	734
PfeI	GAWTC	3 cut(s)	199, 476, 560
PkrI	GCNGC	3 cut(s)	126, 147, 150
PsiI	TTATAA	1 cut(s)	852
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	3 cut(s)	188, 327, 858
PspPI	GGNCC	1 cut(s)	857
PsrI	GAACNNNNNNTAC	2 cut(s)	254, 286
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	3 cut(s)	43, 574, 910
RsaI	GTAC	3 cut(s)	327, 615, 767
RsaNI	GTAC	3 cut(s)	326, 614, 766
SalI	GTCGAC	1 cut(s)	167
SapI	GCTCTTC	2 cut(s)	299, 443
SatI	GCNGC	3 cut(s)	125, 146, 149
Sau3AI	GATC	8 cut(s)	43, 244, 253, 342, 508, 574, 892, 910
Sau96I	GGNCC	1 cut(s)	857
ScrFI	CCNGG	4 cut(s)	571, 572, 823, 879
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	2 cut(s)	781, 926
SfcI	CTRYAG	2 cut(s)	143, 808
SinI	GGWCC	1 cut(s)	857
SmaI	CCCGGG	1 cut(s)	572
Sse9I	AATT	7 cut(s)	58, 438, 468, 621, 653, 802, 871
SsiI	CCGC	1 cut(s)	293
StyD4I	CCNGG	4 cut(s)	569, 570, 821, 877
StyI	CCWWGG	2 cut(s)	310, 860
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	5 cut(s)	168, 216, 240, 273, 345
TasI	AATT	7 cut(s)	58, 438, 468, 621, 653, 802, 871
TatI	WGTACW	1 cut(s)	765
TfiI	GAWTC	3 cut(s)	199, 476, 560
TscAI	CASTG	2 cut(s)	16, 263
TseI	GCWGC	3 cut(s)	124, 145, 148
TspDTI	ATGAA	2 cut(s)	123, 579
TspGWI	ACGGA	1 cut(s)	469
TspMI	CCCGGG	1 cut(s)	570
TspRI	CASTG	2 cut(s)	16, 263
VpaK11BI	GGWCC	1 cut(s)	857
XapI	RAATTY	2 cut(s)	468, 621
XceI	RCATGY	1 cut(s)	280
XmaI	CCCGGG	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.