Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

22494995 .. 22496889

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G211800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGAGGGGTCTGGCTCTGGGATTTATGAGAATCATCCATACGTACCCAGAGATCTAAAGCTACCTGGATTCGTACCTGGGTTTCTCTCACAGTCCACCATTCTTGGGGTCTATGGCCTCTCTTCCCTCCTCGTCGTTTTGCTTACGTGGCTCTTCTCCGGGCGGTCTCCAAAAAAATCAAAAATTGATAGATGGCTAATGTGTTGGTGGGCCTTCACGGGCCTCACCCACATGATACTTGAAGGCTATTTTGCCTTCTCGCCCGAGTTTTACAAGGATAAGACTGCTTGTTACCTTGCTGAAGTTTGGAAAGAGTACAGCAAAGGTGATTCAAGATATGCAGCTCGGGATGCAGGCGTTGTTGCTGTTGAAGGACTAACTGCAGTTTTAGAAGGTCCAGCTTGCCTTCTTGCAGTATATGCAATAGCTAAAGGCAAGTCATATAGCTACATACTTCAGTTTGCCATTTCGTTGGGGCAGCTCTATGGAACTGCAGTATACTTCATAACATCCTACTTGGAAGGTGACAACTTTGCTGCAAGTTCATTCTACTACTATGCATACTACGTTGCTGCTAATGCCTCCTGGGTTGTAATACCGACGCTTATATCCATCCGCTGTTGGAAAAAGATTTGTGCAGCAGTACAAGTTCAAGGCCACAAAAAGAACAAAACCCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

9.04

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	3 cut(s)	163, 616, 676
AcuI	CTGAAG	2 cut(s)	321, 440
AfaI	GTAC	4 cut(s)	45, 75, 317, 645
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	242, 333, 371, 653
AjnI	CCWGG	3 cut(s)	64, 76, 584
AluBI	AGCT	6 cut(s)	61, 344, 401, 428, 447, 481
AluI	AGCT	6 cut(s)	61, 344, 401, 428, 447, 481
Alw26I	GTCTC	1 cut(s)	171
Ama87I	CYCGRG	2 cut(s)	263, 345
AoxI	GGCC	4 cut(s)	115, 210, 220, 655
ApeKI	GCWGC	5 cut(s)	341, 478, 536, 572, 638
AspS9I	GGNCC	3 cut(s)	210, 220, 395
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	217, 338, 536
AvaI	CYCGRG	2 cut(s)	263, 345
AvaII	GGWCC	1 cut(s)	395
BbvI	GCAGC	5 cut(s)	353, 490, 523, 559, 650
BccI	CCATC	2 cut(s)	186, 620
BciT130I	CCWGG	3 cut(s)	66, 78, 586
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	2 cut(s)	381, 492
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	5 cut(s)	342, 479, 537, 573, 639
BlsI	GCNGC	5 cut(s)	343, 480, 538, 574, 640
Bme1390I	CCNGG	4 cut(s)	66, 78, 160, 586
Bme18I	GGWCC	1 cut(s)	395
BmeT110I	CYCGRG	2 cut(s)	263, 345
BmgT120I	GGNCC	3 cut(s)	210, 220, 395
BmrFI	CCNGG	4 cut(s)	66, 78, 160, 586
BmsI	GCATC	1 cut(s)	340
BpuMI	CCSGG	1 cut(s)	160
BsaAI	YACGTR	2 cut(s)	43, 147
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	2 cut(s)	77, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
BseBI	CCWGG	3 cut(s)	66, 78, 586
BseDI	CCNNGG	2 cut(s)	77, 585
BseGI	GGATG	4 cut(s)	34, 355, 509, 612
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	5 cut(s)	353, 490, 523, 559, 650
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	4 cut(s)	117, 212, 222, 657
BsiHKCI	CYCGRG	2 cut(s)	263, 345
BsiSI	CCGG	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	4 cut(s)	117, 212, 222, 657
Bso31I	GGTCTC	1 cut(s)	171
BsoBI	CYCGRG	2 cut(s)	263, 345
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	3 cut(s)	163, 616, 676
BspANI	GGCC	4 cut(s)	117, 212, 222, 657
BspMAI	CTGCAG	2 cut(s)	385, 496
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	77, 585
BssMI	GATC	1 cut(s)	52
BssNAI	GTATAC	1 cut(s)	499
Bst1107I	GTATAC	1 cut(s)	499
Bst2UI	CCWGG	3 cut(s)	66, 78, 586
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	127, 158
BstAPI	GCANNNNNTGC	1 cut(s)	419
BstBAI	YACGTR	2 cut(s)	43, 147
BstC8I	GCNNGC	2 cut(s)	355, 403
BstF5I	GGATG	4 cut(s)	34, 355, 509, 612
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 350, 419, 578
BstNI	CCWGG	3 cut(s)	66, 78, 586
BstSCI	CCNGG	4 cut(s)	64, 76, 158, 584
BstSFI	CTRYAG	2 cut(s)	381, 492
BstSNI	TACGTA	1 cut(s)	43
BstV1I	GCAGC	5 cut(s)	353, 490, 523, 559, 650
BstX2I	RGATCY	1 cut(s)	52
BstXI	CCANNNNNNTGG	1 cut(s)	472
BstYI	RGATCY	1 cut(s)	52
BstZ17I	GTATAC	1 cut(s)	499
BsuRI	GGCC	4 cut(s)	117, 212, 222, 657
BtsCI	GGATG	4 cut(s)	34, 355, 509, 612
Cac8I	GCNNGC	2 cut(s)	355, 403
Cfr13I	GGNCC	3 cut(s)	210, 220, 395
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	4 cut(s)	44, 74, 316, 644
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	1 cut(s)	232
CviQI	GTAC	4 cut(s)	44, 74, 316, 644
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	127, 158
EarI	CTCTTC	2 cut(s)	127, 158
Eco105I	TACGTA	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	2 cut(s)	321, 440
Eco88I	CYCGRG	2 cut(s)	263, 345
EcoRII	CCWGG	3 cut(s)	64, 76, 584
EcoT22I	ATGCAT	1 cut(s)	562
FaeI	CATG	1 cut(s)	235
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	5 cut(s)	342, 479, 537, 573, 639
FokI	GGATG	4 cut(s)	21, 362, 496, 599
Fsp4HI	GCNGC	5 cut(s)	342, 479, 537, 573, 639
GluI	GCNGC	5 cut(s)	342, 479, 537, 573, 639
HaeIII	GGCC	4 cut(s)	117, 212, 222, 657
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	610
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	31, 69, 329
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	3 cut(s)	217, 338, 536
Hpy166II	GTNNAC	2 cut(s)	96, 499
Hpy188III	TCNNGA	2 cut(s)	333, 347
Hpy8I	GTNNAC	2 cut(s)	96, 499
Hpy99I	CGWCG	2 cut(s)	137, 604
HpyAV	CCTTC	7 cut(s)	223, 236, 265, 365, 386, 416, 515
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4IV	ACGT	3 cut(s)	42, 146, 567
HpyCH4V	TGCA	9 cut(s)	341, 353, 383, 413, 422, 494, 539, 560, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 350, 419, 578
HpySE526I	ACGT	3 cut(s)	42, 146, 567
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	52
LguI	GCTCTTC	1 cut(s)	158
Lsp1109I	GCAGC	5 cut(s)	353, 490, 523, 559, 650
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	3 cut(s)	42, 146, 567
MaeIII	GTNAC	2 cut(s)	290, 524
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	114, 145
MflI	RGATCY	1 cut(s)	52
MluCI	AATT	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	5 cut(s)	128, 137, 140, 233, 592
Mph1103I	ATGCAT	1 cut(s)	562
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	618, 678
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	4 cut(s)	66, 78, 160, 586
MvaI	CCWGG	3 cut(s)	66, 78, 586
MwoI	GCNNNNNNNGC	4 cut(s)	148, 350, 419, 578
NciI	CCSGG	1 cut(s)	160
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	31, 69, 329
PkrI	GCNGC	5 cut(s)	343, 480, 538, 574, 640
Ppu21I	YACGTR	2 cut(s)	43, 147
Psp6I	CCWGG	3 cut(s)	64, 76, 584
PspGI	CCWGG	3 cut(s)	64, 76, 584
PspPI	GGNCC	3 cut(s)	210, 220, 395
PstI	CTGCAG	2 cut(s)	385, 496
PsuI	RGATCY	1 cut(s)	52
RsaI	GTAC	4 cut(s)	45, 75, 317, 645
RsaNI	GTAC	4 cut(s)	44, 74, 316, 644
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	5 cut(s)	342, 479, 537, 573, 639
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	3 cut(s)	210, 220, 395
ScrFI	CCNGG	4 cut(s)	66, 78, 160, 586
SfaNI	GCATC	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	381, 492
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	230
SnaBI	TACGTA	1 cut(s)	43
Sse9I	AATT	1 cut(s)	183
SsiI	CCGC	3 cut(s)	163, 616, 676
StyD4I	CCNGG	4 cut(s)	64, 76, 158, 584
TaaI	ACNGT	1 cut(s)	93
TaiI	ACGT	3 cut(s)	45, 149, 570
TasI	AATT	1 cut(s)	183
TatI	WGTACW	2 cut(s)	315, 643
TfiI	GAWTC	3 cut(s)	31, 69, 329
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	5 cut(s)	341, 478, 536, 572, 638
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	2 cut(s)	493, 534
VpaK11BI	GGWCC	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	498
Zsp2I	ATGCAT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.