Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

22493137 .. 22494911

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G211700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCCACAGCTGAGAAAATCAAGAACCTGACAGATTGCAGCTCTATAGAACTGAAGCTCATCTCCTGTAAGGATCTCAAAGCCTTCAACTTCTTAAAGAAGCTGTCGGTCTACGCCGTGGTCTCCATCTTCAACGACGAAATGAAGAAAGATGAACAGCAACAACATCTGCAGCGGCAGAAAACACCGGTTGACAGAGAAGGCGAAGGCAACCCAGAATGGAACCACACGGTGCACTTCGACACCAAAGACATGTCTCTGGTTGACAAGTTGGATCATCTTTACGTCAAATTCGACATGCGCTGTGAAGGCATCCTTTTTGGCAAGAAAAGCCTGGGAAAAGTCCTGGTGCCCTTCACGGATTTGCTTGATGAGGTCAATGAGGCAGTCAGGTTTCTGAGCTATCAGGTTCGGACTTGGGATGGTAAGCCTAATGGGGTCTTGAATTTTTCTTCCAAAGTGATTAGGAAGAAGAAGAACAAAAGCAACATTGGAGTTCATGATTCCCAGGAGACTGGTTCTTCTTCTGAATCAGTAACCAGTGTTCCTGATCCTGCTGATAATACAGTCCGATCTCTTTATCCCACCTTAGAAGTTCAAGCACAAAACCAGTCCCGGGACATATCCTATCCTTCACTAGCTGAAGTTACCTCTCCTCTGCCAAGAATCTCGGTTCCTTCGCCAGAGTTCAATTTCCATTGGAGACCAGAATCTTACCCTATGAGTCTACCATCAACCCTGCCATTTAATCTTCCTGCTGCAGCTGTGCCTGCACCAAATGTGCATTGCCATCCATGCCATCTCTTGCCGTTTCTACAGTCTCCAGGGTCATATTGGCATCCGGCAGAGTTGGCAAATTATGGTAATTACAGTTTCTGTGGGAACCCAGCTGGGTTTGGACAATTAGGGATGGTGGAGAATAAAGGCCATGATGGATGGAGGATTAATAGTCCAGGGACTAAAAGTGGCCCTTCCAGTTCCAGACTTGGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

332

Amino Acids

36.92

Weight (kDa)

6.83

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	2 cut(s)	111, 727
AciI	CCGC	1 cut(s)	175
AclWI	GGATC	3 cut(s)	81, 282, 545
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	290, 445
AcuI	CTGAAG	2 cut(s)	74, 663
AdeI	CACNNNGTG	1 cut(s)	232
AfiI	CCNNNNNNNGG	2 cut(s)	616, 987
AflIII	ACRYGT	1 cut(s)	252
AgeI	ACCGGT	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	88, 133, 445, 599, 691
AjnI	CCWGG	5 cut(s)	333, 345, 507, 823, 952
AluBI	AGCT	8 cut(s)	11, 42, 58, 103, 402, 641, 764, 890
AluI	AGCT	8 cut(s)	11, 42, 58, 103, 402, 641, 764, 890
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	5 cut(s)	127, 261, 506, 697, 825
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	3 cut(s)	81, 282, 545
AlwNI	CAGNNNCTG	1 cut(s)	876
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	3 cut(s)	3, 925, 967
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	4 cut(s)	39, 172, 758, 761
ApoI	RAATTY	2 cut(s)	290, 445
AseI	ATTAAT	1 cut(s)	945
AsiGI	ACCGGT	1 cut(s)	187
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	968
AsuC2I	CCSGG	2 cut(s)	616, 617
AvaI	CYCGRG	1 cut(s)	615
BaeGI	GKGCMC	2 cut(s)	237, 354
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	4 cut(s)	51, 184, 745, 773
BccI	CCATC	8 cut(s)	134, 416, 739, 798, 807, 904, 926, 930
BceAI	ACGGC	2 cut(s)	101, 793
BciT130I	CCWGG	5 cut(s)	335, 347, 509, 825, 954
BcnI	CCSGG	2 cut(s)	616, 617
BcoDI	GTCTC	5 cut(s)	127, 261, 506, 697, 825
BfaI	CTAG	2 cut(s)	638, 994
BfmI	CTRYAG	4 cut(s)	45, 170, 759, 815
BisI	GCNGC	5 cut(s)	40, 173, 176, 759, 762
BlsI	GCNGC	5 cut(s)	41, 174, 177, 760, 763
Bme1390I	CCNGG	7 cut(s)	335, 347, 509, 616, 617, 825, 954
BmeT110I	CYCGRG	1 cut(s)	615
BmgT120I	GGNCC	1 cut(s)	968
BmiI	GGNNCC	4 cut(s)	224, 351, 675, 884
BmrFI	CCNGG	7 cut(s)	335, 347, 509, 616, 617, 825, 954
BmsI	GCATC	2 cut(s)	321, 847
BpmI	CTGGAG	1 cut(s)	807
BpuMI	CCSGG	2 cut(s)	616, 617
BsaI	GGTCTC	2 cut(s)	127, 697
BsaJI	CCNNGG	6 cut(s)	117, 334, 507, 615, 824, 953
BsaWI	WCCGGW	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	2 cut(s)	616, 987
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	4 cut(s)	520, 540, 610, 975
Bse3DI	GCAATG	1 cut(s)	784
BseBI	CCWGG	5 cut(s)	335, 347, 509, 825, 954
BseDI	CCNNGG	6 cut(s)	117, 334, 507, 615, 824, 953
BseGI	GGATG	6 cut(s)	312, 427, 790, 838, 915, 941
BseLI	CCNNNNNNNGG	2 cut(s)	616, 987
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	4 cut(s)	520, 540, 610, 975
BseRI	GAGGAG	1 cut(s)	645
BseSI	GKGCMC	2 cut(s)	237, 354
BseXI	GCAGC	4 cut(s)	51, 184, 745, 773
BseYI	CCCAGC	2 cut(s)	886, 890
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	3 cut(s)	5, 927, 969
BshNI	GGYRCC	1 cut(s)	349
BshTI	ACCGGT	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	3 cut(s)	188, 616, 842
BslFI	GGGAC	3 cut(s)	598, 632, 970
BslI	CCNNNNNNNGG	2 cut(s)	616, 987
BsmAI	GTCTC	5 cut(s)	127, 261, 506, 697, 825
BsmFI	GGGAC	3 cut(s)	598, 632, 970
BsnI	GGCC	3 cut(s)	5, 927, 969
Bso31I	GGTCTC	2 cut(s)	127, 697
BsoBI	CYCGRG	1 cut(s)	615
Bsp1286I	GDGCHC	2 cut(s)	237, 354
Bsp143I	GATC	4 cut(s)	73, 274, 550, 572
BspACI	CCGC	1 cut(s)	175
BspANI	GGCC	3 cut(s)	5, 927, 969
BspCNI	CTCAG	2 cut(s)	4, 390
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	4 cut(s)	224, 351, 675, 884
BspMAI	CTGCAG	2 cut(s)	174, 763
BspPI	GGATC	3 cut(s)	81, 282, 545
BspT107I	GGYRCC	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	127, 697
BsrDI	GCAATG	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	520, 540, 610, 975
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	6 cut(s)	117, 334, 507, 615, 824, 953
BssMI	GATC	4 cut(s)	73, 274, 550, 572
Bst2UI	CCWGG	5 cut(s)	335, 347, 509, 825, 954
Bst4CI	ACNGT	4 cut(s)	232, 568, 819, 872
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	3 cut(s)	12, 398, 589
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	6 cut(s)	312, 427, 790, 838, 915, 941
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	4 cut(s)	76, 277, 553, 575
BstMAI	GTCTC	5 cut(s)	127, 261, 506, 697, 825
BstMBI	GATC	4 cut(s)	73, 274, 550, 572
BstMWI	GCNNNNNNNGC	5 cut(s)	309, 330, 770, 795, 851
BstNI	CCWGG	5 cut(s)	335, 347, 509, 825, 954
BstNSI	RCATGY	2 cut(s)	256, 301
BstSCI	CCNGG	7 cut(s)	333, 345, 507, 614, 615, 823, 952
BstSFI	CTRYAG	4 cut(s)	45, 170, 759, 815
BstSLI	GKGCMC	2 cut(s)	237, 354
BstV1I	GCAGC	4 cut(s)	51, 184, 745, 773
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	3 cut(s)	5, 927, 969
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	6 cut(s)	312, 427, 790, 838, 915, 941
BtsIMutI	CAGTG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	771
CaiI	CAGNNNCTG	1 cut(s)	876
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	968
Cfr9I	CCCGGG	1 cut(s)	615
CspAI	ACCGGT	1 cut(s)	187
CviAII	CATG	5 cut(s)	253, 298, 500, 795, 929
DdeI	CTNAG	3 cut(s)	12, 398, 589
DpnI	GATC	4 cut(s)	75, 276, 552, 574
DpnII	GATC	4 cut(s)	73, 274, 550, 572
DraIII	CACNNNGTG	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	3
Eco31I	GGTCTC	2 cut(s)	127, 697
Eco57I	CTGAAG	2 cut(s)	74, 663
Eco88I	CYCGRG	1 cut(s)	615
EcoRII	CCWGG	5 cut(s)	333, 345, 507, 823, 952
FaeI	CATG	5 cut(s)	256, 301, 503, 798, 932
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 955, 987
FaqI	GGGAC	3 cut(s)	598, 632, 970
FatI	CATG	5 cut(s)	252, 297, 499, 794, 928
FblI	GTMKAC	2 cut(s)	111, 727
Fnu4HI	GCNGC	5 cut(s)	40, 173, 176, 759, 762
FokI	GGATG	6 cut(s)	299, 434, 777, 825, 922, 948
Fsp4HI	GCNGC	5 cut(s)	40, 173, 176, 759, 762
FspBI	CTAG	2 cut(s)	638, 994
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	5 cut(s)	40, 173, 176, 759, 762
GsaI	CCCAGC	2 cut(s)	890, 894
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	3 cut(s)	5, 927, 969
HapII	CCGG	3 cut(s)	188, 616, 842
HhaI	GCGC	1 cut(s)	303
Hin1II	CATG	5 cut(s)	256, 301, 503, 798, 932
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	2 cut(s)	193, 265
HindII	GTYRAC	2 cut(s)	193, 265
HinfI	GANTC	5 cut(s)	503, 530, 666, 710, 724
HpaII	CCGG	3 cut(s)	188, 616, 842
Hpy166II	GTNNAC	5 cut(s)	112, 193, 235, 265, 728
Hpy188I	TCNGA	4 cut(s)	399, 414, 529, 572
Hpy188III	TCNNGA	5 cut(s)	22, 442, 500, 548, 981
Hpy8I	GTNNAC	5 cut(s)	112, 193, 235, 265, 728
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	8 cut(s)	94, 194, 200, 302, 364, 642, 687, 981
HpyCH4III	ACNGT	4 cut(s)	232, 568, 819, 872
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	6 cut(s)	39, 172, 235, 761, 773, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	309, 330, 770, 795, 851
HpyF3I	CTNAG	3 cut(s)	12, 398, 589
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	256, 301, 503, 798, 932
HspAI	GCGC	1 cut(s)	301
Kzo9I	GATC	4 cut(s)	73, 274, 550, 572
Lsp1109I	GCAGC	4 cut(s)	51, 184, 745, 773
LweI	GCATC	2 cut(s)	321, 847
MaeI	CTAG	2 cut(s)	638, 994
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	2 cut(s)	535, 646
MalI	GATC	4 cut(s)	75, 276, 552, 574
MboI	GATC	4 cut(s)	73, 274, 550, 572
MboII	GAAGA	9 cut(s)	121, 157, 444, 481, 484, 487, 513, 516, 743
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	237, 354
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	290, 445, 691, 856, 865, 902
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	733
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	5 cut(s)	367, 376, 661, 666, 933
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	95, 747, 945
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	11, 175, 764, 890
MspI	CCGG	3 cut(s)	188, 616, 842
MspR9I	CCNGG	7 cut(s)	335, 347, 509, 616, 617, 825, 954
MvaI	CCWGG	5 cut(s)	335, 347, 509, 825, 954
MwoI	GCNNNNNNNGC	5 cut(s)	309, 330, 770, 795, 851
NciI	CCSGG	2 cut(s)	616, 617
NdeII	GATC	4 cut(s)	73, 274, 550, 572
NlaIII	CATG	5 cut(s)	256, 301, 503, 798, 932
NlaIV	GGNNCC	4 cut(s)	224, 351, 675, 884
NspI	RCATGY	2 cut(s)	256, 301
PagI	TCATGA	1 cut(s)	499
PciI	ACATGT	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	4 cut(s)	503, 530, 666, 710
PinAI	ACCGGT	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	41, 174, 177, 760, 763
PleI	GAGTC	1 cut(s)	732
PpsI	GAGTC	1 cut(s)	732
PscI	ACATGT	1 cut(s)	252
PshBI	ATTAAT	1 cut(s)	945
Psp6I	CCWGG	5 cut(s)	333, 345, 507, 823, 952
PspFI	CCCAGC	2 cut(s)	886, 890
PspGI	CCWGG	5 cut(s)	333, 345, 507, 823, 952
PspN4I	GGNNCC	4 cut(s)	224, 351, 675, 884
PspPI	GGNCC	1 cut(s)	968
PsrI	GAACNNNNNNTAC	2 cut(s)	528, 560
PstI	CTGCAG	2 cut(s)	174, 763
PstNI	CAGNNNCTG	1 cut(s)	876
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	3 cut(s)	11, 764, 890
SaqAI	TTAA	3 cut(s)	95, 747, 945
SatI	GCNGC	5 cut(s)	40, 173, 176, 759, 762
Sau3AI	GATC	4 cut(s)	73, 274, 550, 572
Sau96I	GGNCC	1 cut(s)	968
SchI	GAGTC	1 cut(s)	733
ScrFI	CCNGG	7 cut(s)	335, 347, 509, 616, 617, 825, 954
SduI	GDGCHC	2 cut(s)	237, 354
SfaNI	GCATC	2 cut(s)	321, 847
SfcI	CTRYAG	4 cut(s)	45, 170, 759, 815
SmaI	CCCGGG	1 cut(s)	617
Sse9I	AATT	6 cut(s)	290, 445, 691, 856, 865, 902
SsiI	CCGC	1 cut(s)	175
SspMI	CTAG	2 cut(s)	638, 994
StyD4I	CCNGG	7 cut(s)	333, 345, 507, 614, 615, 823, 952
TaaI	ACNGT	4 cut(s)	232, 568, 819, 872
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	2 cut(s)	240, 294
TaqII	GACCGA	1 cut(s)	97
TasI	AATT	6 cut(s)	290, 445, 691, 856, 865, 902
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	4 cut(s)	503, 530, 666, 710
Tru1I	TTAA	3 cut(s)	95, 747, 945
Tru9I	TTAA	3 cut(s)	95, 747, 945
TscAI	CASTG	1 cut(s)	547
TseI	GCWGC	4 cut(s)	39, 172, 758, 761
TspDTI	ATGAA	3 cut(s)	158, 168, 488
TspGWI	ACGGA	1 cut(s)	374
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	1 cut(s)	547
VneI	GTGCAC	1 cut(s)	233
VspI	ATTAAT	1 cut(s)	945
XapI	RAATTY	2 cut(s)	290, 445
XceI	RCATGY	2 cut(s)	256, 301
XcmI	CCANNNNNNNNNTGG	1 cut(s)	831
XmaI	CCCGGG	1 cut(s)	615
XmiI	GTMKAC	2 cut(s)	111, 727
XspI	CTAG	2 cut(s)	638, 994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.