Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006844.1

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

4429 .. 5826

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006844.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggagggatctgactctgctctgaatcatccgtactcgcctcagaatgtaaagctaccgggatttgtacctgtggtttattcacaggccaccattcttggcgtttatggcctcgcttccctactcgtcgtttcccttacttggctcatctcagggagagccccgaagaaatcaaaacttgataggtggcttatgtgttggtgggctttcacgggcctcacgcatttgatacttgaaggttattttgcattctcgcccgagttttacaaggataagactgcttgttacctggctgaagtctggaaagaatacagcaaaggtgattcaagatacgcatttagggatgcaggagttgttgctgttgaaggattgactgcagttatagagggaccggcttgccttcttgcagtgtatgcaatagctaaaggcaagtcatatagctatgtgctccagcttgccatttctttggggcagctctacggaactgctgtatatttcattacagccttcttggaaggtgaccactttgctgcaagtccgctctactactatgaatactacattgctgccaatgcttcatggatcgttatacccacactcatttcaatccggagttggaagaggatttgtgcagcagtacaggctcaaggccagaagaagaacaaaactcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

224

Amino Acids

24.92

Weight (kDa)

9.01

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	541
AccIII	TCCGGA	1 cut(s)	609
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	2 cut(s)	16, 590
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	35, 69, 639
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	4 cut(s)	236, 327, 365, 606
AjnI	CCWGG	1 cut(s)	288
AluBI	AGCT	5 cut(s)	55, 422, 441, 454, 475
AluI	AGCT	5 cut(s)	55, 422, 441, 454, 475
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	16, 590
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	609
AoxI	GGCC	4 cut(s)	87, 109, 214, 649
ApeKI	GCWGC	4 cut(s)	472, 530, 566, 632
AspS9I	GGNCC	2 cut(s)	214, 389
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	332, 530
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	4 cut(s)	484, 517, 553, 644
BciT130I	CCWGG	1 cut(s)	290
BcnI	CCSGG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	4 cut(s)	473, 531, 567, 633
BlsI	GCNGC	4 cut(s)	474, 532, 568, 634
Bme1390I	CCNGG	2 cut(s)	60, 290
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	214, 389
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	2 cut(s)	60, 290
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	630
BpuMI	CCSGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse118I	RCCGGY	1 cut(s)	391
Bse3DI	GCAATG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	609
BseBI	CCWGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	28, 349
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	56, 165
BseXI	GCAGC	4 cut(s)	484, 517, 553, 644
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	4 cut(s)	89, 111, 216, 651
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	3 cut(s)	59, 392, 610
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	248
BsnI	GGCC	4 cut(s)	89, 111, 216, 651
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	163, 450
Bsp13I	TCCGGA	1 cut(s)	609
Bsp143I	GATC	2 cut(s)	8, 582
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	4 cut(s)	89, 111, 216, 651
BspCNI	CTCAG	2 cut(s)	55, 164
BspEI	TCCGGA	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	2 cut(s)	16, 590
BsrBI	CCGCTC	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	391
BssAI	RCCGGY	1 cut(s)	391
BssMI	GATC	2 cut(s)	8, 582
Bst2UI	CCWGG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	397, 456
BstDEI	CTNAG	2 cut(s)	42, 151
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	28, 349
BstKTI	GATC	2 cut(s)	11, 585
BstMBI	GATC	2 cut(s)	8, 582
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
BstNI	CCWGG	1 cut(s)	290
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	58, 288
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	4 cut(s)	484, 517, 553, 644
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	4 cut(s)	89, 111, 216, 651
BtsCI	GGATG	2 cut(s)	28, 349
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	414
Cac8I	GCNNGC	2 cut(s)	397, 456
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	214, 389
Csp6I	GTAC	3 cut(s)	34, 68, 638
CspCI	CAANNNNNGTGG	2 cut(s)	79, 114
CviAII	CATG	1 cut(s)	579
CviQI	GTAC	3 cut(s)	34, 68, 638
DdeI	CTNAG	2 cut(s)	42, 151
DpnI	GATC	2 cut(s)	10, 584
DpnII	GATC	2 cut(s)	8, 582
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	288
EcoT38I	GRGCYC	1 cut(s)	163
FaeI	CATG	1 cut(s)	582
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	1 cut(s)	578
Fnu4HI	GCNGC	4 cut(s)	473, 531, 567, 633
FokI	GGATG	2 cut(s)	15, 356
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	4 cut(s)	473, 531, 567, 633
GluI	GCNGC	4 cut(s)	473, 531, 567, 633
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	4 cut(s)	89, 111, 216, 651
HapII	CCGG	3 cut(s)	59, 392, 610
Hin1II	CATG	1 cut(s)	582
HinfI	GANTC	3 cut(s)	14, 25, 323
HpaII	CCGG	3 cut(s)	59, 392, 610
HphI	GGTGA	2 cut(s)	332, 530
Hpy188I	TCNGA	3 cut(s)	13, 24, 45
Hpy188III	TCNNGA	3 cut(s)	301, 327, 610
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	5 cut(s)	230, 359, 410, 509, 517
HpyCH4V	TGCA	7 cut(s)	248, 347, 377, 407, 416, 533, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
HpyF3I	CTNAG	2 cut(s)	42, 151
Hsp92II	CATG	1 cut(s)	582
Kpn2I	TCCGGA	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	8, 582
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	4 cut(s)	484, 517, 553, 644
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	284, 518
MalI	GATC	2 cut(s)	10, 584
MbiI	CCGCTC	1 cut(s)	541
MboI	GATC	2 cut(s)	8, 582
MboII	GAAGA	4 cut(s)	178, 631, 667, 670
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	2 cut(s)	163, 450
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	5 cut(s)	51, 122, 227, 379, 615
MroI	TCCGGA	1 cut(s)	609
MspI	CCGG	3 cut(s)	59, 392, 610
MspR9I	CCNGG	2 cut(s)	60, 290
Mva1269I	GAATGC	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	8, 582
NlaIII	CATG	1 cut(s)	582
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	25, 323
PkrI	GCNGC	4 cut(s)	474, 532, 568, 634
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	288
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	214, 389
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	3 cut(s)	35, 69, 639
RsaNI	GTAC	3 cut(s)	34, 68, 638
SatI	GCNGC	4 cut(s)	473, 531, 567, 633
Sau3AI	GATC	2 cut(s)	8, 582
Sau96I	GGNCC	2 cut(s)	214, 389
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	60, 290
SduI	GDGCHC	2 cut(s)	163, 450
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
SsiI	CCGC	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	58, 288
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	2 cut(s)	25, 323
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	4 cut(s)	472, 530, 566, 632
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	3 cut(s)	487, 567, 567
TspGWI	ACGGA	2 cut(s)	21, 495
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.