Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Reverse (-)

25102068 .. 25103797

Gene Structure 1730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAGGGATCTGACTCTGCTCTGAACCATCCGTACTCGCCTCAAAATGTAAAGCTGCCGGGATATGTACCGGGGTTCCTCTCACAAGCCACCATTCTCGGCGTTTATGGCCTCGCTTCCCTATTCGTCGTTTTCGTTACTTGGCTCATCTCTGGACGAGCCCCGAAGAAATCAAAACTTGATAGATGGCTTATGTGCTGGTGGGCTTTCACCGGCCTCACACATATAATACTTGAAGGTTATTTTGCGTTCTCGCCCGAGTTTTACAAGGATAAGACTGCTTGTTACCTGGCTGAAGTCTGGAAAGAATACAGCAAAGGTGATTCAAGATACGCATTTAGGGATGCAGGAGTTGTTGCTGTAGAAGGATTAACTGCAGTTATAGAGGGTCCGGCTTGCCTTCTTGCAGTGTATGCAATAGCTAAAGGCAAGTCATATAGCTACGTGCTCCAGCTCGCTATTTCTTTGGGGCAGCTCTACGGAACCGCTGTATATTTCATTACAGCCCTCTTGGAAGGTGACCACTTTGCTGCAAGTCCATTTTACTACAACGCATACTACATTGCTGCCAATGCGTCCTGGATCGTTATACCTACGCTCATTTCAATCCGGAGTTGGAAGAGGATCTGTGCAGCAGTACAGGCTCAAGGCCAGAAGAAGAACAAAACTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

225

Amino Acids

24.85

Weight (kDa)

9.02

Isoelectric Point (pI)

43.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EBP	PF05241	97 - 205	1.6e-23	EXPERA (EXPanded EBP superfamily)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	609
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	3 cut(s)	16, 590, 632
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	35, 69, 639
AgsI	TTSAA	3 cut(s)	236, 327, 606
AjnI	CCWGG	2 cut(s)	288, 578
AluBI	AGCT	5 cut(s)	55, 422, 441, 454, 475
AluI	AGCT	5 cut(s)	55, 422, 441, 454, 475
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	3 cut(s)	16, 590, 632
Ama87I	CYCGRG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	609
AoxI	GGCC	3 cut(s)	109, 214, 649
ApeKI	GCWGC	5 cut(s)	55, 472, 530, 566, 632
AspS9I	GGNCC	1 cut(s)	389
AsuC2I	CCSGG	2 cut(s)	60, 72
AsuHPI	GGTGA	3 cut(s)	202, 332, 530
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	163
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	5 cut(s)	42, 484, 517, 553, 644
BccI	CCATC	2 cut(s)	36, 180
BciT130I	CCWGG	2 cut(s)	290, 580
BcnI	CCSGG	2 cut(s)	60, 72
BfmI	CTRYAG	2 cut(s)	360, 375
BisI	GCNGC	5 cut(s)	56, 473, 531, 567, 633
BlsI	GCNGC	5 cut(s)	57, 474, 532, 568, 634
Bme1390I	CCNGG	4 cut(s)	60, 72, 290, 580
Bme18I	GGWCC	1 cut(s)	389
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	389
BmiI	GGNNCC	3 cut(s)	77, 390, 484
BmrFI	CCNGG	4 cut(s)	60, 72, 290, 580
BmsI	GCATC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	1 cut(s)	630
BpuMI	CCSGG	2 cut(s)	60, 72
BsaAI	YACGTR	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	71
BsaWI	WCCGGW	1 cut(s)	609
Bse118I	RCCGGY	1 cut(s)	212
Bse3DI	GCAATG	1 cut(s)	561
BseAI	TCCGGA	1 cut(s)	609
BseBI	CCWGG	2 cut(s)	290, 580
BseDI	CCNNGG	1 cut(s)	71
BseGI	GGATG	2 cut(s)	28, 349
BseMI	GCAATG	1 cut(s)	561
BseXI	GCAGC	5 cut(s)	42, 484, 517, 553, 644
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	111, 216, 651
BsiHKAI	GWGCWC	1 cut(s)	450
BsiHKCI	CYCGRG	1 cut(s)	257
BsiSI	CCGG	5 cut(s)	59, 71, 213, 392, 610
BsnI	GGCC	3 cut(s)	111, 216, 651
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	163, 450
Bsp13I	TCCGGA	1 cut(s)	609
Bsp143I	GATC	3 cut(s)	8, 582, 624
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	3 cut(s)	111, 216, 651
BspEI	TCCGGA	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	77, 390, 484
BspMAI	CTGCAG	1 cut(s)	379
BspPI	GGATC	3 cut(s)	16, 590, 632
BsrDI	GCAATG	1 cut(s)	561
BsrFI	RCCGGY	1 cut(s)	212
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	3 cut(s)	8, 582, 624
Bst2UI	CCWGG	2 cut(s)	290, 580
Bst6I	CTCTTC	1 cut(s)	614
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	397, 456
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	2 cut(s)	28, 349
BstKTI	GATC	3 cut(s)	11, 585, 627
BstMBI	GATC	3 cut(s)	8, 582, 624
BstMWI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
BstNI	CCWGG	2 cut(s)	290, 580
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	4 cut(s)	58, 70, 288, 578
BstSFI	CTRYAG	2 cut(s)	360, 375
BstV1I	GCAGC	5 cut(s)	42, 484, 517, 553, 644
BstX2I	RGATCY	2 cut(s)	8, 624
BstYI	RGATCY	2 cut(s)	8, 624
BsuRI	GGCC	3 cut(s)	111, 216, 651
BtsCI	GGATG	2 cut(s)	28, 349
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	414, 670
Cac8I	GCNNGC	2 cut(s)	397, 456
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	389
CseI	GACGC	1 cut(s)	564
Csp6I	GTAC	3 cut(s)	34, 68, 638
CviQI	GTAC	3 cut(s)	34, 68, 638
DpnI	GATC	3 cut(s)	10, 584, 626
DpnII	GATC	3 cut(s)	8, 582, 624
Eam1104I	CTCTTC	1 cut(s)	614
EarI	CTCTTC	1 cut(s)	614
Eco24I	GRGCYC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	257
Eco91I	GGTNACC	1 cut(s)	518
EcoO65I	GGTNACC	1 cut(s)	518
EcoRII	CCWGG	2 cut(s)	288, 578
EcoT38I	GRGCYC	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	56, 473, 531, 567, 633
FokI	GGATG	2 cut(s)	15, 356
FriOI	GRGCYC	1 cut(s)	163
Fsp4HI	GCNGC	5 cut(s)	56, 473, 531, 567, 633
GluI	GCNGC	5 cut(s)	56, 473, 531, 567, 633
GsuI	CTGGAG	1 cut(s)	434
HaeIII	GGCC	3 cut(s)	111, 216, 651
HapII	CCGG	5 cut(s)	59, 71, 213, 392, 610
HgaI	GACGC	1 cut(s)	564
HinfI	GANTC	2 cut(s)	14, 323
HpaII	CCGG	5 cut(s)	59, 71, 213, 392, 610
HphI	GGTGA	3 cut(s)	202, 332, 530
Hpy188I	TCNGA	2 cut(s)	13, 24
Hpy188III	TCNNGA	4 cut(s)	153, 301, 327, 610
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	4 cut(s)	230, 359, 410, 509
HpyCH4IV	ACGT	1 cut(s)	444
HpyCH4V	TGCA	6 cut(s)	347, 377, 407, 416, 533, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
HpySE526I	ACGT	1 cut(s)	444
Kpn2I	TCCGGA	1 cut(s)	609
Kzo9I	GATC	3 cut(s)	8, 582, 624
LmnI	GCTCC	1 cut(s)	453
Lsp1109I	GCAGC	5 cut(s)	42, 484, 517, 553, 644
LweI	GCATC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	444
MaeIII	GTNAC	3 cut(s)	136, 284, 518
MalI	GATC	3 cut(s)	10, 584, 626
MboI	GATC	3 cut(s)	8, 582, 624
MboII	GAAGA	4 cut(s)	178, 631, 667, 670
MflI	RGATCY	2 cut(s)	8, 624
MhlI	GDGCHC	2 cut(s)	163, 450
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	7 cut(s)	51, 89, 122, 227, 379, 518, 615
MroI	TCCGGA	1 cut(s)	609
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	5 cut(s)	59, 71, 213, 392, 610
MspR9I	CCNGG	4 cut(s)	60, 72, 290, 580
MvaI	CCWGG	2 cut(s)	290, 580
MwoI	GCNNNNNNNGC	4 cut(s)	108, 413, 572, 641
NciI	CCSGG	2 cut(s)	60, 72
NdeII	GATC	3 cut(s)	8, 582, 624
NlaIV	GGNNCC	3 cut(s)	77, 390, 484
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	578
PkrI	GCNGC	5 cut(s)	57, 474, 532, 568, 634
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	445
Psp6I	CCWGG	2 cut(s)	288, 578
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	2 cut(s)	288, 578
PspN4I	GGNNCC	3 cut(s)	77, 390, 484
PspPI	GGNCC	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PstI	CTGCAG	1 cut(s)	379
PsuI	RGATCY	2 cut(s)	8, 624
RsaI	GTAC	3 cut(s)	35, 69, 639
RsaNI	GTAC	3 cut(s)	34, 68, 638
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	5 cut(s)	56, 473, 531, 567, 633
Sau3AI	GATC	3 cut(s)	8, 582, 624
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	4 cut(s)	60, 72, 290, 580
SduI	GDGCHC	2 cut(s)	163, 450
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	2 cut(s)	360, 375
SinI	GGWCC	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
SsiI	CCGC	1 cut(s)	486
StyD4I	CCNGG	4 cut(s)	58, 70, 288, 578
TaiI	ACGT	1 cut(s)	447
TatI	WGTACW	1 cut(s)	637
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	5 cut(s)	55, 472, 530, 566, 632
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	1 cut(s)	487
TspGWI	ACGGA	2 cut(s)	21, 495
TspRI	CASTG	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.