Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Forward (+)

7936438 .. 7937874

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGGGATCGGACGCTGGAATTTATGGGAATCATCCGTACGCCCCGAGGGATCGATCATTACTACATAAGTTAAAGCTACCGGGATTCGTACCTGGCTTTCTCTCACAGTCCACCATTGTCGGCGTCTACGGCGTCTCCTCCCTACTCGTCGTTTCTCTCACCTGGCTATTCTCCGGGAGGTCACCGAGGAAATCAAAACTTGATAGATGGCTAATGTGCTGGTGGGCTTTCACCGGCCTTACACACTTGATACTCGAAGGCTATTTTGCATTTGCGCCTGAGTTCTACAAGGATGAGACTGCTTGGTACCCAGCTGAAGTTTGGAAAGAGTATAGCAAAGGTGATTCAAGATATGCAGCTAGGGATGCAGGCGTCGTTGCTGTCGAAGGATTAACTGCGGTTATTGAAGGTCCCGCTAGCCTTCTTGCTGTGTATGCAATATCTAAAGGCAAGTCATATAGCTACATACTTCAGTTTGCCATTTCGTTGGGTCAGCTCTATGGAACTGCTGTGTACTTCATAACAGCCTACTTGGACGGTGACAAATTTGCTACAAGTTCGTTTTACTACTATGCATACTACATTGCTGCAAACGCCTCCTGGGTTGTAATACCGACACTCATTTCCATCCGCTGTTGGAAGAAGATTTCTGCCGCAGTACAAGTTCAAGGCCAAGGCCAAGGCCAGAAAAAGAACAAAACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

237

Amino Acids

26.28

Weight (kDa)

9.3

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	4 cut(s)	401, 417, 634, 657
AclWI	GGATC	2 cut(s)	16, 60
AcsI	RAATTY	2 cut(s)	21, 548
AcuI	CTGAAG	2 cut(s)	339, 458
AcyI	GRCGYC	3 cut(s)	126, 135, 375
AfaI	GTAC	5 cut(s)	41, 93, 311, 518, 663
AgsI	TTSAA	3 cut(s)	351, 410, 671
AjnI	CCWGG	3 cut(s)	94, 164, 602
AluBI	AGCT	5 cut(s)	79, 317, 362, 465, 499
AluI	AGCT	5 cut(s)	79, 317, 362, 465, 499
Alw26I	GTCTC	2 cut(s)	142, 293
AlwI	GGATC	2 cut(s)	16, 60
Ama87I	CYCGRG	1 cut(s)	46
AoxI	GGCC	4 cut(s)	238, 673, 679, 685
ApeKI	GCWGC	2 cut(s)	359, 590
ApoI	RAATTY	2 cut(s)	21, 548
Asp718I	GGTACC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	2 cut(s)	84, 178
AsuHPI	GGTGA	5 cut(s)	154, 177, 226, 356, 554
AsuNHI	GCTAGC	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	371, 577
BccI	CCATC	2 cut(s)	204, 638
BceAI	ACGGC	1 cut(s)	148
BciT130I	CCWGG	3 cut(s)	96, 166, 604
BcnI	CCSGG	2 cut(s)	84, 178
BcoDI	GTCTC	2 cut(s)	142, 293
BfaI	CTAG	2 cut(s)	363, 420
BisI	GCNGC	3 cut(s)	360, 591, 657
BlsI	GCNGC	3 cut(s)	361, 592, 658
Bme1390I	CCNGG	5 cut(s)	84, 96, 166, 178, 604
Bme18I	GGWCC	1 cut(s)	413
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	311, 415
BmrFI	CCNGG	5 cut(s)	84, 96, 166, 178, 604
BmsI	GCATC	1 cut(s)	358
BmtI	GCTAGC	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	84, 178
Bsa29I	ATCGAT	1 cut(s)	55
BsaHI	GRCGYC	3 cut(s)	126, 135, 375
BsaJI	CCNNGG	5 cut(s)	47, 188, 603, 676, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bse118I	RCCGGY	1 cut(s)	236
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	3 cut(s)	96, 166, 604
BseCI	ATCGAT	1 cut(s)	55
BseDI	CCNNGG	5 cut(s)	47, 188, 603, 676, 682
BseGI	GGATG	4 cut(s)	34, 301, 373, 630
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	2 cut(s)	371, 577
BseYI	CCCAGC	1 cut(s)	313
BshFI	GGCC	4 cut(s)	240, 675, 681, 687
BshNI	GGYRCC	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	83, 177, 237
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	142, 293
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	4 cut(s)	240, 675, 681, 687
BsoBI	CYCGRG	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	8, 52, 56
BspACI	CCGC	4 cut(s)	401, 417, 634, 657
BspANI	GGCC	4 cut(s)	240, 675, 681, 687
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	311, 415
BspOI	GCTAGC	1 cut(s)	423
BspPI	GGATC	2 cut(s)	16, 60
BspT107I	GGYRCC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	5 cut(s)	47, 188, 603, 676, 682
BssMI	GATC	3 cut(s)	8, 52, 56
BssNI	GRCGYC	3 cut(s)	126, 135, 375
BssT1I	CCWWGG	2 cut(s)	676, 682
Bst2UI	CCWGG	3 cut(s)	96, 166, 604
Bst4CI	ACNGT	2 cut(s)	111, 542
BstACI	GRCGYC	3 cut(s)	126, 135, 375
BstC8I	GCNNGC	2 cut(s)	373, 421
BstDEI	CTNAG	1 cut(s)	282
BstEII	GGTNACC	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	34, 301, 373, 630
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	11, 55, 59
BstMAI	GTCTC	2 cut(s)	142, 293
BstMBI	GATC	3 cut(s)	8, 52, 56
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 368, 437, 596
BstNI	CCWGG	3 cut(s)	96, 166, 604
BstPI	GGTNACC	1 cut(s)	183
BstSCI	CCNGG	5 cut(s)	82, 94, 164, 176, 602
BstV1I	GCAGC	2 cut(s)	371, 577
BstXI	CCANNNNNNTGG	1 cut(s)	490
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	4 cut(s)	240, 675, 681, 687
BsuTUI	ATCGAT	1 cut(s)	55
BtsCI	GGATG	4 cut(s)	34, 301, 373, 630
Cac8I	GCNNGC	2 cut(s)	373, 421
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	413
ClaI	ATCGAT	1 cut(s)	55
CseI	GACGC	4 cut(s)	23, 115, 124, 364
Csp6I	GTAC	5 cut(s)	40, 92, 310, 517, 662
CviQI	GTAC	5 cut(s)	40, 92, 310, 517, 662
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	3 cut(s)	10, 54, 58
DpnII	GATC	3 cut(s)	8, 52, 56
Eco130I	CCWWGG	2 cut(s)	676, 682
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	339, 458
Eco88I	CYCGRG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	413
EcoO65I	GGTNACC	1 cut(s)	183
EcoRII	CCWGG	3 cut(s)	94, 164, 602
EcoT14I	CCWWGG	2 cut(s)	676, 682
EcoT22I	ATGCAT	1 cut(s)	580
ErhI	CCWWGG	2 cut(s)	676, 682
Esp3I	CGTCTC	1 cut(s)	142
FaqI	GGGAC	1 cut(s)	399
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	360, 591, 657
FokI	GGATG	4 cut(s)	21, 308, 380, 617
Fsp4HI	GCNGC	3 cut(s)	360, 591, 657
FspBI	CTAG	2 cut(s)	363, 420
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	3 cut(s)	360, 591, 657
GsaI	CCCAGC	1 cut(s)	317
HaeIII	GGCC	4 cut(s)	240, 675, 681, 687
HapII	CCGG	3 cut(s)	83, 177, 237
HgaI	GACGC	4 cut(s)	23, 115, 124, 364
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	3 cut(s)	126, 135, 375
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	3 cut(s)	31, 87, 347
HpaII	CCGG	3 cut(s)	83, 177, 237
HphI	GGTGA	5 cut(s)	154, 177, 226, 356, 554
Hpy166II	GTNNAC	3 cut(s)	114, 130, 517
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	3 cut(s)	114, 130, 517
Hpy99I	CGWCG	2 cut(s)	155, 380
HpyAV	CCTTC	4 cut(s)	254, 383, 404, 434
HpyCH4III	ACNGT	2 cut(s)	111, 542
HpyCH4V	TGCA	6 cut(s)	272, 359, 371, 440, 578, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 368, 437, 596
HpyF3I	CTNAG	1 cut(s)	282
Hsp92I	GRCGYC	3 cut(s)	126, 135, 375
HspAI	GCGC	1 cut(s)	278
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	8, 52, 56
Lsp1109I	GCAGC	2 cut(s)	371, 577
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	363, 420
MaeIII	GTNAC	2 cut(s)	183, 542
MalI	GATC	3 cut(s)	10, 54, 58
MboI	GATC	3 cut(s)	8, 52, 56
MboII	GAAGA	2 cut(s)	655, 658
MluCI	AATT	2 cut(s)	21, 548
MmeI	TCCRAC	1 cut(s)	620
MnlI	CCTC	5 cut(s)	42, 151, 174, 183, 610
Mph1103I	ATGCAT	1 cut(s)	580
MseI	TTAA	2 cut(s)	74, 395
MspA1I	CMGCKG	2 cut(s)	317, 636
MspI	CCGG	3 cut(s)	83, 177, 237
MspR9I	CCNGG	5 cut(s)	84, 96, 166, 178, 604
MvaI	CCWGG	3 cut(s)	96, 166, 604
MwoI	GCNNNNNNNGC	4 cut(s)	132, 368, 437, 596
NciI	CCSGG	2 cut(s)	84, 178
NdeII	GATC	3 cut(s)	8, 52, 56
NheI	GCTAGC	1 cut(s)	419
NlaIV	GGNNCC	2 cut(s)	311, 415
NmuCI	GTSAC	2 cut(s)	183, 542
NsiI	ATGCAT	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	31, 87, 347
Pfl23II	CGTACG	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	3 cut(s)	361, 592, 658
PpuMI	RGGWCCY	1 cut(s)	413
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	3 cut(s)	94, 164, 602
PspEI	GGTNACC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	313
PspGI	CCWGG	3 cut(s)	94, 164, 602
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	311, 415
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	5 cut(s)	41, 93, 311, 518, 663
RsaNI	GTAC	5 cut(s)	40, 92, 310, 517, 662
SaqAI	TTAA	2 cut(s)	74, 395
SatI	GCNGC	3 cut(s)	360, 591, 657
Sau3AI	GATC	3 cut(s)	8, 52, 56
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	5 cut(s)	84, 96, 166, 178, 604
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	2 cut(s)	21, 548
SsiI	CCGC	4 cut(s)	401, 417, 634, 657
SspMI	CTAG	2 cut(s)	363, 420
StyD4I	CCNGG	5 cut(s)	82, 94, 164, 176, 602
StyI	CCWWGG	2 cut(s)	676, 682
TaaI	ACNGT	2 cut(s)	111, 542
TaqI	TCGA	3 cut(s)	55, 258, 387
TasI	AATT	2 cut(s)	21, 548
TatI	WGTACW	2 cut(s)	516, 661
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	3 cut(s)	31, 87, 347
Tru1I	TTAA	2 cut(s)	74, 395
Tru9I	TTAA	2 cut(s)	74, 395
TseFI	GTSAC	2 cut(s)	183, 542
TseI	GCWGC	2 cut(s)	359, 590
Tsp45I	GTSAC	2 cut(s)	183, 542
TspDTI	ATGAA	1 cut(s)	511
TspGWI	ACGGA	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	21, 548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	363, 420
Zsp2I	ATGCAT	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.