Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010468.1

Orthogroup ID

OG0004072

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1404

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010468.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

gccaccattcttggcgtttatggcctcgcttccctactcgtcgtttcccttacttggctcatctcagggagagccccgaagaaatcaaaacttgataggtggcttatgtgttggtgggctttcacgggcctcacgcatttgatacttgaaggttattttgcattctcgcccgagttttacaaggataagactgcttgttacctggctgaagtctggaaagaatacagcaaaggtgattcaagatacgcatttagggatgcaggagttgttgctgttgaaggattgactgcagttatagagggaccggcttgccttcttgcagtgtatgcaatagctaaaggcaagtcatatagctatgtgctccagcttgccatttctttggggcagctctacggaactgctgtatatttcattacagccttcttggaaggtgaccactttgctgcaagtccgctctactactatgaatactacattgctgccaatgcttcatggatcgttatacccacactcatttcaatccggagttggaagaggatttgtgcagcagtacaggctcaaggccagaagaagaacaaaactcgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000247 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0016020 GO:0016125 GO:0016126 GO:0016853 GO:0016860 GO:0016863 GO:0044238 GO:0044464 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko00195 ko01100 ko01110 map00100 map00195 map01100 map01110

Pfam Domains

Protein Families

EBP

Protein Analysis

195

Amino Acids

21.78

Weight (kDa)

9.16

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004072)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20050
fragaria_vesca	FvH4_4g22200 FvH4_4g22210
malus_domestica	MD13G1133800.v1.1 MD13G1133900.v1.1 MD16G1144400.v1.1 MD16G1144500.v1.1
prunus_persica	Prupe.1G211700_v2.0.a1 Prupe.1G211800_v2.0.a1 Prupe.1G211800_v2.0.a1
pyrus_communis	pycom13g11660 pycom16g11370 pycom16g11380
rosa_chinensis	RchiOBHm_Chr4g0428431 RchiOBHm_Chr4g0428441
rosa_laevigata	RLG00000007151
rosa_multiflora	Rmu_sc0006844.1_g000002 Rmu_sc0006844.1_g000003 Rmu_sc0010468.1_g000001 Rmu_sc0010468.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370100 Rroxscaffold_5G00370110
rosa_rugosa	Rorug04G0225300 Rorug04G0225300
rosa_samantha	Rh4AG282700 Rh4AG282800 Rh4BG288400 Rh4BG288500 Rh4CG304100 Rh4DG285500 Rh4DG285600
rosa_wichuraiana	Rw4G024540 Rw4G024550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	454
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	552
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	4 cut(s)	149, 240, 278, 519
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	4 cut(s)	335, 354, 367, 388
AluI	AGCT	4 cut(s)	335, 354, 367, 388
Alw21I	GWGCWC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	503
Ama87I	CYCGRG	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	3 cut(s)	22, 127, 562
ApeKI	GCWGC	4 cut(s)	385, 443, 479, 545
AspS9I	GGNCC	2 cut(s)	127, 302
AsuHPI	GGTGA	2 cut(s)	245, 443
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	4 cut(s)	397, 430, 466, 557
BciT130I	CCWGG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	4 cut(s)	386, 444, 480, 546
BlsI	GCNGC	4 cut(s)	387, 445, 481, 547
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	127, 302
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	247
BpmI	CTGGAG	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse118I	RCCGGY	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	474
BseAI	TCCGGA	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	203
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	4 cut(s)	397, 430, 466, 557
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	3 cut(s)	24, 129, 564
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	2 cut(s)	305, 523
BslFI	GGGAC	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	3 cut(s)	24, 129, 564
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	76, 363
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	24, 129, 564
BspCNI	CTCAG	1 cut(s)	77
BspEI	TCCGGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	503
BsrBI	CCGCTC	1 cut(s)	454
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssMI	GATC	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	2 cut(s)	310, 369
BstDEI	CTNAG	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 326, 485, 554
BstNI	CCWGG	1 cut(s)	203
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	4 cut(s)	397, 430, 466, 557
BstXI	CCANNNNNNTGG	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	24, 129, 564
BtsCI	GGATG	1 cut(s)	262
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	310, 369
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	2 cut(s)	127, 302
Csp6I	GTAC	1 cut(s)	551
CspCI	CAANNNNNGTGG	1 cut(s)	27
CviAII	CATG	1 cut(s)	492
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	228
Eco88I	CYCGRG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	431
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	495
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	1 cut(s)	491
Fnu4HI	GCNGC	4 cut(s)	386, 444, 480, 546
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	386, 444, 480, 546
GluI	GCNGC	4 cut(s)	386, 444, 480, 546
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	24, 129, 564
HapII	CCGG	2 cut(s)	305, 523
Hin1II	CATG	1 cut(s)	495
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	305, 523
HphI	GGTGA	2 cut(s)	245, 443
Hpy188III	TCNNGA	3 cut(s)	214, 240, 523
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	5 cut(s)	143, 272, 323, 422, 430
HpyCH4V	TGCA	7 cut(s)	161, 260, 290, 320, 329, 446, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 326, 485, 554
HpyF3I	CTNAG	1 cut(s)	64
Hsp92II	CATG	1 cut(s)	495
Kpn2I	TCCGGA	1 cut(s)	522
Kzo9I	GATC	1 cut(s)	495
LmnI	GCTCC	1 cut(s)	366
Lsp1109I	GCAGC	4 cut(s)	397, 430, 466, 557
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	2 cut(s)	197, 431
MalI	GATC	1 cut(s)	497
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	1 cut(s)	495
MboII	GAAGA	4 cut(s)	91, 544, 580, 583
MhlI	GDGCHC	2 cut(s)	76, 363
MmeI	TCCRAC	1 cut(s)	509
MnlI	CCTC	4 cut(s)	35, 140, 292, 528
MroI	TCCGGA	1 cut(s)	522
MspI	CCGG	2 cut(s)	305, 523
MspR9I	CCNGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	4 cut(s)	21, 326, 485, 554
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	1 cut(s)	495
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	431
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	387, 445, 481, 547
Psp6I	CCWGG	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	127, 302
PstI	CTGCAG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SatI	GCNGC	4 cut(s)	386, 444, 480, 546
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	2 cut(s)	127, 302
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	2 cut(s)	76, 363
SetI	ASST	9 cut(s)	101, 154, 204, 235, 337, 356, 369, 390, 433
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	288
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
SsiI	CCGC	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	201
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	236
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	431
TseI	GCWGC	4 cut(s)	385, 443, 479, 545
Tsp45I	GTSAC	1 cut(s)	431
TspDTI	ATGAA	3 cut(s)	400, 480, 480
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.